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Aleksandar Milosavljevic
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2020 – today
- 2023
- [j27]Aleksandar M. Dimitrijevic
, Aleksandar Milosavljevic
, Dejan D. Rancic:
Efficient Distortion Mitigation and Partition Reduction in Mapping Global Geodata: Dual Orthogonal Equidistant Cylindrical Projection Approach. ISPRS Int. J. Geo Inf. 12(7): 289 (2023) - [j26]Kilannin Krysiak
, Arpad M. Danos, Jason Saliba, Joshua F. McMichael, Adam C. Coffman
, Susanna Kiwala
, Erica K. Barnell, Lana Sheta, Cameron J. Grisdale, Lynzey Kujan, Shahil Pema
, Jake Lever, Sarah Ridd
, Nicholas C. Spies, Veronica Andric, Andreea Chiorean, Damian Tobias Rieke, Kaitlin A. Clark, Caralyn Reisle, Ajay C. Venigalla, Mark Evans, Payal Jani, Hideaki Takahashi, Avila Suda, Peter Horák
, Deborah i Ritter, Xin Zhou
, Benjamin J. Ainscough, Sean Delong, Chimene Kesserwan, Mario Lamping, Haolin Shen
, Alex Marr, My Hoang, Kartik Singhal
, Mariam Khanfar
, Brian V. Li, Wan-Hsin Lin, Panieh Terraf, Laura B. Corson
, Yasser Salama, Katie M. Campbell
, Kirsten M. Farncombe
, Jianling Ji
, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamanna, Ian King, Kelsy C. Cotto
, Zachary L. Skidmore, Jason R. Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y. Patel, Rachel H. Giles, Raymond H. Kim, Lynn M. Schriml
, Elaine R. Mardis, Steven J. M. Jones
, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H. Wagner
, Malachi Griffith
, Obi L. Griffith
:
CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase. Nucleic Acids Res. 51(D1): 1230-1241 (2023) - [j25]Oscar D. Murillo
, Varduhi Petrosyan, Emily L. LaPlante
, Lacey E. Dobrolecki, Michael T. Lewis, Aleksandar Milosavljevic:
Deconvolution of cancer cell states by the XDec-SM method. PLoS Comput. Biol. 19(8) (2023) - [c12]Aleksandar Milosavljevic, Robin Piedeleu, Fabio Zanasi
:
String Diagram Rewriting Modulo Commutative (Co)Monoid Structure. CALCO 2023: 9:1-9:17 - [c11]Aleksandar Milosavljevic
, Bratislav Predic
, Djuradj Milosevic
:
Imagelytics: A Deep Learning-Based Image Classification Tool to Support Bioassessment. DCAI (3) 2023: 42-50 - 2022
- [j24]Chih-Hsuan Wei
, Alexis Allot
, Kevin Riehle
, Aleksandar Milosavljevic, Zhiyong Lu
:
tmVar 3.0: an improved variant concept recognition and normalization tool. Bioinform. 38(18): 4449-4451 (2022) - [j23]Predrag Obradovic
, Vladimir B. Kovacevic
, Xiqi Li
, Aleksandar Milosavljevic
:
An Information-Theoretic Bound on p-Values for Detecting Communities Shared between Weighted Labeled Graphs. Entropy 24(10): 1329 (2022) - [i2]Chih-Hsuan Wei, Alexis Allot, Kevin Riehle, Aleksandar Milosavljevic, Zhiyong Lu:
tmVar 3.0: an improved variant concept recognition and normalization tool. CoRR abs/2204.03637 (2022) - [i1]Aleksandar Milosavljevic, Fabio Zanasi:
String Diagram Rewriting Modulo Commutative Monoid Structure. CoRR abs/2204.04274 (2022) - 2021
- [j22]Lillian R. Thistlethwaite, Varduhi Petrosyan, Xiqi Li
, Marcus J. Miller, Sarah H. Elsea
, Aleksandar Milosavljevic
:
CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models. PLoS Comput. Biol. 17(1) (2021) - [j21]Lillian R. Thistlethwaite, Varduhi Petrosyan, Xiqi Li
, Marcus J. Miller, Sarah H. Elsea, Aleksandar Milosavljevic:
Correction: CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models. PLoS Comput. Biol. 17(10) (2021) - 2020
- [j20]Clémentine Decamps
, Florian Privé, Raphael Bacher, Daniel Jost
, Arthur Waguet, Eugene Andres Houseman, Eugene Lurie, Pavlo Lutsik
, Aleksandar Milosavljevic, Michael Scherer
, Michael G. B. Blum, Magali Richard
:
Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software. BMC Bioinform. 21(1): 16 (2020) - [j19]Aleksandar Milosavljevic
:
Identification of Salt Deposits on Seismic Images Using Deep Learning Method for Semantic Segmentation. ISPRS Int. J. Geo Inf. 9(1): 24 (2020) - [j18]Aleksandar Milosavljevic
:
Automated Processing of Remote Sensing Imagery Using Deep Semantic Segmentation: A Building Footprint Extraction Case. ISPRS Int. J. Geo Inf. 9(8): 486 (2020)
2010 – 2019
- 2017
- [j17]Aleksandar Milosavljevic
, Dejan D. Rancic, Aleksandar M. Dimitrijevic, Bratislav Predic
, Vladan Mihajlovic:
A Method for Estimating Surveillance Video Georeferences. ISPRS Int. J. Geo Inf. 6(7): 211 (2017) - [c10]Smiljana Djorovic
, Nenad Filipovic
, Aleksandar Milosavljevic, Lazar U. Velicki
:
Comparative Finite Element Analysis of Patient-Specific Tricuspid and Bicuspid Aortic Valve. BIBE 2017: 563-567 - 2016
- [j16]Casey L. Overby
, Guilherme Del Fiol
, Wendy S. Rubinstein, Donna R. Maglott, Tristan Nelson, Aleksandar Milosavljevic, Christa Martin, Scott Goehringer
, Robert R. Freimuth
, Marc S. Williams, Bret S. E. Heale:
Integrating Genomic Resources with Electronic Health Records using the HL7 Infobutton Standard. Appl. Clin. Inform. 07(03): 817-831 (2016) - [j15]Aleksandar Milosavljevic
, Dejan D. Rancic, Aleksandar M. Dimitrijevic, Bratislav Predic
, Vladan Mihajlovic:
Integration of GIS and video surveillance. Int. J. Geogr. Inf. Sci. 30(10): 2089-2107 (2016) - 2015
- [j14]Roadmap Epigenomics Consortium, Anshul Kundaje
, Wouter Meuleman
, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi Moussavi, Pouya Kheradpour, ZhiZhuo Zhang, Jianrong Wang, Michael J. Ziller, Viren Amin, John W. Whitaker
, Matthew D. Schultz, Lucas D. Ward
, Abhishek Sarkar
, Gerald T. Quon
, Richard S. Sandstrom
, Matthew L. Eaton, Yi-Chieh Wu, Andreas R. Pfenning, Xinchen Wang
, Melina Claussnitzer, Yaping Liu
, Cristian Coarfa, R. Alan Harris
, Noam Shoresh, Charles B. Epstein
, Elizabeta Gjoneska, Danny Leung, Wei Xie, R. David Hawkins, Ryan Lister
, Chibo Hong, Philippe Gascard
, Andrew J. Mungall
, Richard A. Moore, Eric Chuah, Angela Tam, Theresa K. Canfield, R. Scott Hansen, Rajinder Kaul
, Peter J. Sabo, Mukul S. Bansal
, Annaick Carles, Jesse R. Dixon, Kyle Kai-How Farh, Soheil Feizi, Rosa Karlic
, Ah-Ram Kim, Ashwinikumar Kulkarni, Daofeng Li
, Rebecca F. Lowdon, GiNell Elliott, Tim R. Mercer, Shane J. Neph, Vitor Onuchic, Paz Polak, Nisha Rajagopal, Pradipta Ray
, Richard C. Sallari, Kyle T. Siebenthall, Nicholas A. Sinnott-Armstrong, Michael Stevens, Robert E. Thurman, Jie Wu, Bo Zhang
, Xin Zhou, Arthur E. Beaudet, Laurie A. Boyer, Philip L. De Jager, Peggy J. Farnham
, Susan J. Fisher, David Haussler, Steven J. M. Jones
, Wei Li, Marco A. Marra
, Michael T. McManus
, Shamil R. Sunyaev, James A. Thomson, Thea D. Tlsty, Li-Huei Tsai, Wei Wang, Robert A. Waterland, Michael Q. Zhang, Lisa H. Chadwick, Bradley E. Bernstein, Joseph F. Costello, Joseph R. Ecker
, Martin Hirst, Alexander Meissner, Aleksandar Milosavljevic, Bing Ren, John A. Stamatoyannopoulos, Ting Wang, Manolis Kellis:
Integrative analysis of 111 reference human epigenomes Open. Nat. 518(7539): 317-330 (2015) - 2014
- [j13]Cristian Coarfa, Christina Pichot, Andrew R. Jackson, Arpit Tandon, Viren Amin, Sriram Raghuraman, Sameer Paithankar, Adrian V. Lee, Sean E. McGuire, Aleksandar Milosavljevic:
Analysis of interactions between the epigenome and structural mutability of the genome using Genboree workbench tools. BMC Bioinform. 15(S-7): S2 (2014) - 2013
- [j12]Chia-Chin Wu
, Kalpana Kannan, Steven Lin, Laising Yen, Aleksandar Milosavljevic:
Identification of cancer fusion drivers using network fusion centrality. Bioinform. 29(9): 1174-1181 (2013) - 2012
- [j11]Danny Challis, Jin Yu
, Uday S. Evani, Andrew R. Jackson, Sameer Paithankar, Cristian Coarfa, Aleksandar Milosavljevic, Richard A. Gibbs, Fuli Yu:
An integrative variant analysis suite for whole exome next-generation sequencing data. BMC Bioinform. 13: 8 (2012) - [j10]Kevin Riehle
, Cristian Coarfa, Andrew R. Jackson, Jun Ma, Arpit Tandon, Sameer Paithankar, Sriram Raghuraman, Toni-Ann Mistretta, Delphine Saulnier, Sabeen Raza, Maria Diaz
, Robert Shulman, Kjersti Aagaard, James Versalovic, Aleksandar Milosavljevic:
The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences. BMC Bioinform. 13(S-13): S11 (2012) - 2011
- [c9]Uday S. Evani, Danny Challis, Jin Yu, Andrew R. Jackson, Sameer Paithankar, Matthew N. Bainbridge, Cristian Coarfa, Aleksandar Milosavljevic, Fuli Yu:
Enabling Atlas2 personal genome analysis on the cloud. GENSiPS 2011: 117-120 - 2010
- [j9]Bratislav Predic, Dejan D. Rancic, Aleksandar Milosavljevic:
Impacts of Applying Automated Vehicle Location Systems to Public Bus Transport Management. J. Res. Pract. Inf. Technol. 42(2): 79-98 (2010) - [j8]Cristian Coarfa, Fuli Yu, Christopher A. Miller, Zuozhou Chen, R. Alan Harris
, Aleksandar Milosavljevic:
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing. BMC Bioinform. 11: 572 (2010) - [j7]Aleksandar Milosavljevic
, Aleksandar M. Dimitrijevic
, Dejan D. Rancic:
GIS-augmented video surveillance. Int. J. Geogr. Inf. Sci. 24(9): 1415-1433 (2010)
2000 – 2009
- 2008
- [c8]Cristian Coarfa, Aleksandar Milosavljevic:
Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies. Pacific Symposium on Biocomputing 2008: 102-113 - 2007
- [c7]Bratislav Predic
, Dragan Stojanovic, Slobodanka Djordjevic-Kajan, Aleksandar Milosavljevic, Dejan D. Rancic:
Prediction of Bus Motion and Continuous Query Processing for Traveler Information Services. ADBIS 2007: 234-249 - [c6]Leonid Stoimenov, Aleksandar Milosavljevic, Aleksandar S. Stanimirovic:
GIS as a Tool in Emergency Management Process. World Congress on Engineering 2007: 238-242 - 2004
- [j6]Miklós Csürös, Aleksandar Milosavljevic:
Pooled Genomic Indexing (PGI): Analysis and Design of Experiments. J. Comput. Biol. 11(5): 1001-1021 (2004) - 2002
- [c5]Miklós Csürös, Aleksandar Milosavljevic:
Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment Design. WABI 2002: 10-28 - 2000
- [j5]Aleksandar Milosavljevic:
The Economic Value of Bioinformation. Bioinform. 16(7): 571-572 (2000)
1990 – 1999
- 1999
- [p1]Aleksandar Milosavljevic:
Discovering Patterns in DNA Sequences by the Algorithmic Significance Method. Pattern Discovery in Biomolecular Data 1999: 3-23 - 1996
- [c4]Aleksandar Milosavljevic, Suzana Savkovic, Radomir Crkvenjakov, David Salbego, Hope Serrato, Heidi Kreuzer, Anne Gemmell, Shawna Batus, Danica Grujic, Susan Carnahan, Jovanka Tepavcevic:
Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers. ISMB 1996: 176-181 - 1995
- [j4]Aleksandar Milosavljevic:
DNA Sequence Recognition by Hybridization to Short Oligomers. J. Comput. Biol. 2(2): 355-370 (1995) - [j3]Aleksandar Milosavljevic:
Discovering Dependencies via Algorithmic Mutual Information: A Case Study in DNA Sequence Comparisons. Mach. Learn. 21(1-2): 35-50 (1995) - 1994
- [c3]Aleksandar Milosavljevic:
Sequence Comparisons via Algorithmic Mutual Information. ISMB 1994: 303-309 - 1993
- [j2]Aleksandar Milosavljevic, Jerzy Jurka:
Discovering simple DNA sequences by the algorithmic significance method. Comput. Appl. Biosci. 9(4): 407-411 (1993) - [j1]Aleksandar Milosavljevic, Jerzy Jurka:
Discovery by Minimal Length Encoding: A Case Study in Molecular Evolution. Mach. Learn. 12: 69-87 (1993) - [c2]Aleksandar Milosavljevic:
Discovering Sequence Similarity by the Algorithmic Significance Method. ISMB 1993: 284-291
1980 – 1989
- 1989
- [c1]Aleksandar Milosavljevic, David Haussler, Jerzy Jurka:
Informed Parsimonious Inference of Prototypical Genetic Sequences. COLT 1989: 102-117
Coauthor Index
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