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ORCIDManja Marz
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- affiliation: Friedrich Schiller University Jena, Institute of Computer Science
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2020 – today
- 2023
[j17]Guillermo Rangel-Pineros
, Alexandre Almeida, Martin Beracochea, Ekaterina A. Sakharova, Manja Marz, Alejandro Reyes, Martin Hölzer, Robert D. Finn:
VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models. PLoS Comput. Biol. 19(8) (2023)- 2021
- [j16]Franziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida, Abdel Aouacheria, Cecilia N. Arighi, Alex Bateman, Jan Baumbach, Niko Beerenwinkel, Christian Brandt, Marco Cacciabue, Sara Chuguransky, Oliver Drechsel, Robert D. Finn, Adrian Fritz, Stephan Fuchs, Georges Hattab, Anne-Christin Hauschild, Dominik Heider, Marie Hoffmann, Martin Hölzer, Stefan Hoops, Lars Kaderali, Ioanna Kalvari, Max von Kleist, Renó Kmiecinski, Denise Kühnert, Gorka Lasso, Pieter Libin, Markus List, Hannah F. Löchel, Maria Jesus Martin, Roman Martin, Julian O. Matschinske, Alice C. McHardy, Pedro Mendes, Jaina Mistry, Vincent Navratil, Eric P. Nawrocki, Áine Niamh O'toole, Nancy Ontiveros-Palacios, Anton I. Petrov, Guillermo Rangel-Pineros, Nicole Redaschi, Susanne Reimering, Knut Reinert, Alejandro Reyes, Lorna J. Richardson, David L. Robertson, Sepideh Sadegh, Joshua B. Singer, Kristof Theys, Chris Upton, Marius Welzel, Lowri Williams, Manja Marz:
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research. Briefings Bioinform. 22(2): 642-663 (2021) - [j15]Florian Mock, Adrian Viehweger, Emanuel Barth, Manja Marz:
VIDHOP, viral host prediction with deep learning. Bioinform. 37(3): 318-325 (2021) - [j14]Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz:
EpiDope: a deep neural network for linear B-cell epitope prediction. Bioinform. 37(4): 448-455 (2021) - [j13]Martin Hölzer, Manja Marz:
PoSeiDon: a Nextflow pipeline for the detection of evolutionary recombination events and positive selection. Bioinform. 37(7): 1018-1020 (2021) - [j12]Maximilian Collatz, Florian Mock, Emanuel Barth, Martin Hölzer, Konrad Sachse, Manja Marz:
EpiDope: a deep neural network for linear B-cell epitope prediction. Bioinform. 37(12): 1784 (2021) - [j11]Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov:
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49(Database-Issue): D192-D200 (2021) - 2020
- [j10]Akash Srivastava, Emanuel Barth, Maria A. Ermolaeva, Madlen Guenther, Christiane Frahm, Manja Marz, Otto W. Witte:
Tissue-specific Gene Expression Changes Are Associated with Aging in Mice. Genom. Proteom. Bioinform. 18(4): 430-442 (2020)
2010 – 2019
- 2019
- [j9]Markus Fricke, Ruman Gerst, Bashar Ibrahim, Michael Niepmann, Manja Marz:
Global importance of RNA secondary structures in protein-coding sequences. Bioinform. 35(4): 579-583 (2019) - 2016
- [j8]Markus Fricke, Manja Marz:
Prediction of conserved long-range RNA-RNA interactions in full viral genomes. Bioinform. 32(19): 2928-2935 (2016) - 2014
- [j7]Jing Qin, Markus Fricke, Manja Marz, Peter F. Stadler, Rolf Backofen:
Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures. Algorithms Mol. Biol. 9: 19 (2014) - [j6]Manja Marz, Niko Beerenwinkel, Christian Drosten, Markus Fricke, Dmitrij Frishman, Ivo L. Hofacker, Dieter Hoffmann, Martin Middendorf, Thomas Rattei, Peter F. Stadler, Armin Töpfer:
Challenges in RNA virus bioinformatics. Bioinform. 30(13): 1793-1799 (2014) - [c4]Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruelheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter, Wolf Zimmermann:
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research. DATA 2014: 251-257 - 2013
- [j5]Marcus Lechner, Manja Marz, Christian Ihling, Andrea Sinz, Peter F. Stadler, Veiko Krauss:
The correlation of genome size and DNA methylation rate in metazoans. Theory Biosci. 132(1): 47-60 (2013) - [c3]Nicolas Wieseke, Marcus Lechner, Marcus Ludwig, Manja Marz:
POMAGO: Multiple Genome-Wide Alignment Tool for Bacteria. ISBRA 2013: 249-260 - [c2]Rolf Backofen, Markus Fricke, Manja Marz, Jing Qin, Peter F. Stadler:
Distribution of Graph-Distances in Boltzmann Ensembles of RNA Secondary Structures. WABI 2013: 112-125 - 2011
- [j4]Andrew X. Li, Manja Marz, Jing Qin, Christian M. Reidys:
RNA-RNA interaction prediction based on multiple sequence alignments. Bioinform. 27(4): 456-463 (2011) - [j3]Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska:
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis. BMC Bioinform. 12: 124 (2011) - 2010
- [j2]Manja Marz, Nathalie Vanzo, Peter F. Stadler:
Temperature-Dependent Structural Variability of RNAs: spliced Leader RNAs and their Evolutionary History. J. Bioinform. Comput. Biol. 8(1): 1-17 (2010)
2000 – 2009
- 2009
- [c1]Todd Ingalls, Georg Martius, Manja Marz, Sonja J. Proshaka, Marc Hellmuth:
Converting DNA to Music: ComposAlign. GCB 2009: 93-103 - 2007
- [j1]Manja Marz, Axel Mosig, Bärbel M. R. Stadler, Peter F. Stadler:
U7 snRNAs: A Computational Survey. Genom. Proteom. Bioinform. 5(3-4): 187-195 (2007)
Coauthor Index
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