![](https://dblp.dagstuhl.de/img/logo.ua.320x120.png)
![](https://dblp.dagstuhl.de/img/dropdown.dark.16x16.png)
![](https://dblp.dagstuhl.de/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.dagstuhl.de/img/search.dark.16x16.png)
![search dblp](https://dblp.dagstuhl.de/img/search.dark.16x16.png)
default search action
Sean D. Mooney
Person information
Refine list
![note](https://dblp.dagstuhl.de/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
- [j30]Timothy Bergquist
, Thomas Schaffter
, Yao Yan, Thomas Yu, Justin Prosser, Jifan Gao, Guanhua Chen, Lukasz Charzewski, Zofia Nawalany, Ivan Brugere, Renata Retkute, Alidivinas Prusokas, Augustinas Prusokas, Yonghwa Choi, Sanghoon Lee, Junseok Choe, Inggeol Lee, Sunkyu Kim
, Jaewoo Kang
, Sean D. Mooney
, Justin Guinney
:
Evaluation of crowdsourced mortality prediction models as a framework for assessing artificial intelligence in medicine. J. Am. Medical Informatics Assoc. 31(1): 35-44 (2023) - [j29]Chethan Jujjavarapu
, Pradeep Suri, Vikas Pejaver, Janna Friedly, Laura S. Gold, Eric Meier, Trevor Cohen, Sean D. Mooney, Patrick J. Heagerty, Jeffrey G. Jarvik:
Predicting decompression surgery by applying multimodal deep learning to patients' structured and unstructured health data. BMC Medical Informatics Decis. Mak. 23(1): 2 (2023) - 2022
- [c19]Chao Yan, Yao Yan, Ziqi Zhang, Zhiyu Wan, Justin Guinney, Sean D. Mooney, Bradley A. Malin:
Assessing Machine Learning Based Generators for Synthetic Electronic Health Records: A Benchmarking. AMIA 2022 - [c18]Serena Jinchen Xie, Flavia Kapos, Stephen J. Mooney, Sean D. Mooney, Kari A. Stephens, Andrea L. Hartzler, Abhishek Pratap:
Geospatial divide in real-world EHR data: Analytical workflow to assess regional biases and potential impact on health equity. AMIA 2022 - [i3]Yao Yan, Thomas Yu, Kathleen Muenzen, Sijia Liu, Connor Boyle, George Koslowski, Jiaxin Zheng, Nicholas J. Dobbins
, Clement Essien, Hongfang Liu, Larsson Omberg, Meliha Yestigen, Bradley Taylor, James A. Eddy, Justin Guinney, Sean D. Mooney, Thomas Schaffter:
The NLP Sandbox: an efficient model-to-data system to enable federated and unbiased evaluation of clinical NLP models. CoRR abs/2206.14181 (2022) - [i2]Chao Yan, Yao Yan, Zhiyu Wan, Ziqi Zhang, Larsson Omberg, Justin Guinney, Sean D. Mooney, Bradley A. Malin:
A Multifaceted Benchmarking of Synthetic Electronic Health Record Generation Models. CoRR abs/2208.01230 (2022) - 2021
- [j28]Jimmy Phuong
, Christina Bandaragoda
, Shefali Haldar, Kari A. Stephens
, Patricia Ordóñez, Sean D. Mooney
, Andrea L. Hartzler
:
Information needs and priority use cases of population health researchers to improve preparedness for future hurricanes and floods. J. Am. Medical Informatics Assoc. 28(2): 249-260 (2021) - [j27]Diane M. Korngiebel
, Sean D. Mooney:
Considering the possibilities and pitfalls of Generative Pre-trained Transformer 3 (GPT-3) in healthcare delivery. npj Digit. Medicine 4 (2021) - [c17]Yao Yan, Thomas Schaffter, Timothy Bergquist, Thomas Yu, Justin Prosser, Sean D. Mooney, Justin Guinney:
A Continuous Crowd-sourced Challenge for Benchmarking COVID-19 Health Outcome Prediction. AMIA 2021 - [c16]Lara M. Mangravite, Sean D. Mooney, Iddo Friedberg, Justin Guinney:
Establishing the reliability of algorithms. PSB 2021 - 2020
- [j26]Nicholas J. Dobbins
, Clifford H. Spital
, Robert A. Black, Jason M. Morrison, Bas de Veer, Elizabeth Zampino
, Robert D. Harrington, Bethene D. Britt, Kari A. Stephens, Adam B. Wilcox, Peter Tarczy-Hornoch, Sean D. Mooney
:
Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research. J. Am. Medical Informatics Assoc. 27(1): 109-118 (2020) - [j25]Timothy Bergquist
, Yao Yan, Thomas Schaffter, Thomas Yu
, Vikas Pejaver, Noah Hammarlund, Justin Prosser, Justin Guinney
, Sean D. Mooney
:
Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction. J. Am. Medical Informatics Assoc. 27(9): 1393-1400 (2020) - [j24]Abhishek Pratap
, Elias Chaibub Neto, Phil Snyder, Carl Stepnowsky, Noémie Elhadad, Daniel Grant, Matthew H. Mohebbi, Sean D. Mooney
, Christine Suver, John Wilbanks, Lara M. Mangravite, Patrick J. Heagerty, Pat A. Areán, Larsson Omberg
:
Indicators of retention in remote digital health studies: a cross-study evaluation of 100, 000 participants. npj Digit. Medicine 3 (2020)
2010 – 2019
- 2019
- [j23]Jimmy Phuong, Christina Bandaragoda
, Erkan Istanbulluoglu
, Claire Beveridge
, Ronda Strauch, Landung Setiawan
, Sean D. Mooney
:
Automated retrieval, preprocessing, and visualization of gridded hydrometeorology data products for spatial-temporal exploratory analysis and intercomparison. Environ. Model. Softw. 116: 119-130 (2019) - [j22]Sean D. Mooney
:
Continuing challenges swirl around bioinformatics service delivery. J. Biomed. Informatics 94 (2019) - [j21]Kymberleigh A. Pagel
, Danny Antaki
, Aojie Lian
, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva
, Sean D. Mooney
, Predrag Radivojac:
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. PLoS Comput. Biol. 15(6) (2019) - [c15]Timothy Bergquist, Vikas Pejaver, Noah Hammarlund, Sean D. Mooney, Stephen J. Mooney:
Detecting Seasonal, Holiday, and Rare Events from Trauma Data in the Electronic Health Record. AMIA 2019 - [c14]Yongqun He, Edison Ong, Jennifer Schaub, Frederick Dowd, John F. O'Toole, Anastasios Siapos, Christian G. Reich, Sarah Seager, Ling Wang, Hong Yu, Jie Zheng, Christian J. Stoeckert Jr., Xiaolin Yang, Sheng Yang, Becky Steck, Christopher Park, Laura Barisoni, Matthias Kretzler, Jonathan Himmelfarb, Ravi Iyengar, Sean D. Mooney:
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis. ICBO 2019: 1-10 - [i1]Abhishek Pratap, Elias Chaibub Neto, Phil Snyder, Carl Stepnowsky, Noémie Elhadad, Daniel Grant, Matthew H. Mohebbi, Sean D. Mooney, Christine Suver
, John Wilbanks, Lara M. Mangravite, Patricki J. Heagerty, Pat A. Areán, Larsson Omberg:
Indicators of retention in remote digital health studies: A cross-study evaluation of 100, 000 participants. CoRR abs/1910.01165 (2019) - 2018
- [j20]Mary Regina Boland
, Pradipta Parhi, Li Li
, Riccardo Miotto
, Robert J. Carroll, Usman Iqbal, Phung-Anh (Alex) Nguyen, Martijn J. Schuemie, Seng Chan You, Donahue Smith, Sean D. Mooney
, Patrick B. Ryan, Yu-Chuan (Jack) Li, Rae Woong Park, Joshua C. Denny
, Joel T. Dudley, George Hripcsak, Pierre Gentine
, Nicholas P. Tatonetti:
Uncovering exposures responsible for birth season - disease effects: a global study. J. Am. Medical Informatics Assoc. 25(3): 275-288 (2018) - [c13]Yongqun He, Becky Steck, Edison Ong, Laura Mariani, Chrysta Lienczewski, Ulysses J. Balis, Matthias Kretzler, Jonathan Himmelfarb, John F. Bertram, Evren U. Azeloglu, Ravi Iyengar, Deborah Hoshizaki, Sean D. Mooney:
KTAO: A Kidney Tissue Atlas Ontology to Support Community-Based Kidney Knowledge Base Development and Data Integration. ICBO 2018 - 2017
- [j19]Kymberleigh A. Pagel, Vikas Pejaver, Guan Ning Lin, Hyun-Jun Nam, Matthew E. Mort, David N. Cooper, Jonathan Sebat, Lilia M. Iakoucheva
, Sean D. Mooney
, Predrag Radivojac:
When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants. Bioinform. 33(14): i389-i398 (2017) - [c12]Abhishek Pratap, Joaquin A. Anguera, Brenna N. Renn
, Elias Chaibub Neto, Joshua Volponi, Sean D. Mooney
, Pat A. Areán:
The feasibility of using smartphones to assess and remediate depression in Hispanic/Latino individuals nationally. UbiComp/ISWC Adjunct 2017: 854-860 - [c11]Alexander A. Morgan, Dana C. Crawford, Joshua C. Denny, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2017: 348-355 - 2016
- [j18]Jose Lugo-Martinez
, Vikas Pejaver, Kymberleigh A. Pagel, Shantanu Jain
, Matthew E. Mort, David N. Cooper, Sean D. Mooney
, Predrag Radivojac:
The Loss and Gain of Functional Amino Acid Residues Is a Common Mechanism Causing Human Inherited Disease. PLoS Comput. Biol. 12(8) (2016) - [c10]Meliha Yetisgen, Lucy Vanderwende, Tony Black, Sean D. Mooney, Peter Tarczy-Hornoch:
A New Way of Representing Clinical Reports for Rapid Phenotyping. CRI 2016 - [c9]Alexander A. Morgan, Sean D. Mooney, Bruce J. Aronow, Steven E. Brenner:
Session Introduction. PSB 2016: 243-248 - [c8]Steven E. Brenner, Stephen Kingsmore, Sean D. Mooney, Robert Nussbaum, Jennifer Puck:
Use of Genome Data in Newborns as a Starting Point for Life-Long Precision Medicine. PSB 2016: 568-575 - 2015
- [j17]Iddo Friedberg
, Mark N. Wass
, Sean D. Mooney
, Predrag Radivojac:
Ten Simple Rules for a Community Computational Challenge. PLoS Comput. Biol. 11(4) (2015) - 2014
- [j16]Mark N. Wass
, Sean D. Mooney
, Michal Linial
, Predrag Radivojac, Iddo Friedberg
:
The automated function prediction SIG looks back at 2013 and prepares for 2014. Bioinform. 30(14): 2091-2092 (2014) - [j15]Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace H. T. Yeo
, Violeta Beleva Guthrie, Hannah Carter, Peter D. Stenson, David N. Cooper
, Biao Li, Sean D. Mooney
, Rachel Karchin
:
A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing. PLoS Comput. Biol. 10(9) (2014) - 2013
- [j14]Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova
, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena
, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo
, Amanda May
, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney
, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn
, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder
, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo
, Peter Uetz
, Kenneth Verheggen
, Brynn H. Voy, Louise Warnich
, Steven W. Wilhelm
, Gregory Yandl:
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1(4): 196-201 (2013) - [j13]Tobias Wittkop, Emily TerAvest, Uday S. Evani, K. Mathew Fleisch, Ari E. Berman, Corey Powell, Nigam H. Shah, Sean D. Mooney
:
STOP using just GO: a multi-ontology hypothesis generation tool for high throughput experimentation. BMC Bioinform. 14: 53 (2013) - 2011
- [j12]Troy B. Hawkins, Jessica Dantzer, Brandon Peters, Mary Dinauer, Keithanne Mockaitis, Sean D. Mooney
, Kenneth Cornetta
:
Identifying viral integration sites using SeqMap 2.0. Bioinform. 27(5): 720-722 (2011) - [j11]Tobias Wittkop, Sean D. Mooney:
Introduction: Advances in Computational Systems Bioinformatics. J. Bioinform. Comput. Biol. 9(2) (2011) - 2010
- [j10]Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper
, Sean D. Mooney
, Predrag Radivojac:
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. Bioinform. 26(16): 1975-1982 (2010) - [j9]Fuxiao Xin, Steven A. Myers, Yong Fuga Li, David N. Cooper, Sean D. Mooney, Predrag Radivojac:
Structure-based kernels for the prediction of catalytic residues and their involvement in human inherited disease. BMC Bioinform. 11(S-10): O4 (2010) - [c7]Shuyan Li, Lilia M. Iakoucheva, Sean D. Mooney, Predrag Radivojac:
Loss of Post-Translational Modification Sites in Disease. Pacific Symposium on Biocomputing 2010: 337-347
2000 – 2009
- 2009
- [j8]Biao Li, Vidhya G. Krishnan, Matthew E. Mort, Fuxiao Xin, Kishore K. Kamati, David N. Cooper
, Sean D. Mooney
, Predrag Radivojac:
Automated inference of molecular mechanisms of disease from amino acid substitutions. Bioinform. 25(21): 2744-2750 (2009) - 2008
- [j7]Sean D. Mooney
, Peter H. Baenziger:
Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group. Briefings Bioinform. 9(1): 69-74 (2008) - [j6]Arti Singh, Adebayo Olowoyeye, Peter H. Baenziger, Jessica Dantzer, Maricel G. Kann, Predrag Radivojac, Randy W. Heiland
, Sean D. Mooney
:
MutDB: update on development of tools for the biochemical analysis of genetic variation. Nucleic Acids Res. 36(Database-Issue): 815-819 (2008) - [c6]Predrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, Sean D. Mooney
:
Gain and loss of phosphorylation sites in human cancer. ECCB 2008: 241-247 - 2007
- [c5]Xin Wang, Guohua Wang, Changyu Shen, Lang Li, Xinguo Wang, Sean D. Mooney, Howard J. Edenberg, Jeremy Sanford, Yunlong Liu:
Refining Detection of RNA-Protein Binding Regions by Pyrosequencing of RNA Fragments. BIOCOMP 2007: 664-672 - 2005
- [j5]Sean D. Mooney
:
Bioinformatics approaches and resources for single nucleotide polymorphism functional analysis. Briefings Bioinform. 6(1): 44-56 (2005) - [j4]Jessica Dantzer, Charles W. Moad, Randy W. Heiland
, Sean D. Mooney
:
MutDB services: interactive structural analysis of mutation data. Nucleic Acids Res. 33(Web-Server-Issue): 311-314 (2005) - [c4]Patricia C. Babbitt, Philip E. Bourne, Sean D. Mooney:
Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure. Pacific Symposium on Biocomputing 2005 - 2004
- [c3]Sean D. Mooney, Philip E. Bourne, Patricia C. Babbitt:
Session Introduction. Pacific Symposium on Biocomputing 2004: 372-374 - 2003
- [j3]Sean D. Mooney
, Russ B. Altman:
MutDB: annotating human variation with functionally relevant data. Bioinform. 19(14): 1858-1860 (2003) - [j2]Rattikorn Hewett, John H. Leuchner, Sean D. Mooney
, Teri E. Klein:
Analysis of Mutations in the COLIA1 Gene with Second-Order Rule Induction. Int. J. Pattern Recognit. Artif. Intell. 17(5): 721-740 (2003) - [c2]Sean D. Mooney, Patricia C. Babbitt:
Informatics Approaches in Structural Genomics - Session Introduction. Pacific Symposium on Biocomputing 2003: 176-179 - 2002
- [j1]Sean D. Mooney
, Teri E. Klein:
The functional importance of disease-associated mutation. BMC Bioinform. 3: 24 (2002) - [c1]Rattikorn Hewett, John H. Leuchner, Choh Man Teng, Sean D. Mooney, Teri E. Klein:
Compression-Based Induction and Genome Data. FLAIRS 2002: 344-348
Coauthor Index
![](https://dblp.dagstuhl.de/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-08-05 20:26 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint