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Stephan Saalfeld
Person information
- affiliation: Janelia Research Campus, VA, USA
- affiliation: Howard Hughes Medical Institute, Ashburn, VA, USA
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Journal Articles
- 2019
- [j9]Jan Funke
, Fabian Tschopp
, William Grisaitis
, Arlo Sheridan
, Chandan Singh, Stephan Saalfeld
, Srinivas C. Turaga:
Large Scale Image Segmentation with Structured Loss Based Deep Learning for Connectome Reconstruction. IEEE Trans. Pattern Anal. Mach. Intell. 41(7): 1669-1680 (2019) - 2017
- [j8]Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld:
Image-based correction of continuous and discontinuous non-planar axial distortion in serial section microscopy. Bioinform. 33(9): 1379-1386 (2017) - [j7]Corinna Blasse, Stephan Saalfeld, Raphaël Etournay
, Andreas Sagner
, Suzanne Eaton, Eugene W. Myers:
PreMosa: extracting 2D surfaces from 3D microscopy mosaics. Bioinform. 33(16): 2563-2569 (2017) - [j6]David Grant Colburn Hildebrand
, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur W. Wetzel, Andrew Scott Champion, Brett J. Graham, Owen Randlett, George S. Plummer
, Ruben Portugues
, Isaac Henry Bianco
, Stephan Saalfeld, Alexander D. Baden, Kunal Lillaney, Randal C. Burns
, Joshua T. Vogelstein, Alexander Schier
, Wei-Chung Allen Lee
, Won-Ki Jeong, Jeff William Lichtman, Florian Engert:
Whole-brain serial-section electron microscopy in larval zebrafish. Nat. 545(7654): 345-349 (2017) - 2013
- [j5]Tobias Pietzsch, Stephan Preibisch
, Pavel Tomancak
, Stephan Saalfeld:
ImgLib2 - generic image processing in Java. Bioinform. 29(2): 298 (2013) - 2012
- [j4]Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak
, Stephan Saalfeld
:
ImgLib2 - generic image processing in Java. Bioinform. 28(22): 3009-3011 (2012) - 2010
- [j3]Stephan Saalfeld
, Albert Cardona, Volker Hartenstein, Pavel Tomancak
:
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets. Bioinform. 26(12): 57-63 (2010) - 2009
- [j2]Stephan Preibisch
, Stephan Saalfeld
, Pavel Tomancak
:
Globally optimal stitching of tiled 3D microscopic image acquisitions. Bioinform. 25(11): 1463-1465 (2009) - [j1]Stephan Saalfeld
, Albert Cardona, Volker Hartenstein, Pavel Tomancak
:
CATMAID: collaborative annotation toolkit for massive amounts of image data. Bioinform. 25(15): 1984-1986 (2009)
Conference and Workshop Papers
- 2018
- [c6]Jan Funke, Chong Zhang, Tobias Pietzsch, Miguel Ángel González Ballester, Stephan Saalfeld:
The candidate multi-cut for cell segmentation. ISBI 2018: 649-653 - [c5]Larissa Heinrich
, Jan Funke, Constantin Pape
, Juan Nunez-Iglesias
, Stephan Saalfeld:
Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. MICCAI (2) 2018: 317-325 - 2017
- [c4]Larissa Heinrich
, John A. Bogovic, Stephan Saalfeld:
Deep Learning for Isotropic Super-Resolution from Non-isotropic 3D Electron Microscopy. MICCAI (2) 2017: 135-143 - 2016
- [c3]John A. Bogovic, Philipp Hanslovsky, Allan Wong, Stephan Saalfeld:
Robust registration of calcium images by learned contrast synthesis. ISBI 2016: 1123-1126 - 2015
- [c2]Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld:
Post-acquisition image based compensation for thickness variation in microscopy section series. ISBI 2015: 507-511 - 2009
- [c1]Stephan Preibisch
, Stephan Saalfeld
, Torsten Rohlfing, Pavel Tomancak:
Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching. Medical Imaging: Image Processing 2009: 72592S
Informal and Other Publications
- 2024
- [i11]Gabriel J. Selzer, Curtis T. Rueden, Mark C. Hiner, Edward L. Evans, David Kolb, Marcel Wiedenmann, Christian Birkhold, Tim-Oliver Buchholz, Stefan Helfrich, Brian Northan, Alison E. Walter, Johannes E. Schindelin, Tobias Pietzsch, Stephan Saalfeld, Michael R. Berthold, Kevin W. Eliceiri:
SciJava Ops: An Improved Algorithms Framework for Fiji and Beyond. CoRR abs/2405.12385 (2024) - [i10]Cédric Allier, Magdalena C. Schneider, Michael Innerberger, Larissa Heinrich, John A. Bogovic, Stephan Saalfeld:
Decomposing heterogeneous dynamical systems with graph neural networks. CoRR abs/2407.19160 (2024) - 2018
- [i9]Khaled Khairy, Gennady Denisov, Stephan Saalfeld:
Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach. CoRR abs/1804.10019 (2018) - [i8]Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld:
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain. CoRR abs/1805.02718 (2018) - 2017
- [i7]Larissa Heinrich, John A. Bogovic, Stephan Saalfeld:
Deep Learning for Isotropic Super-Resolution from Non-Isotropic 3D Electron Microscopy. CoRR abs/1706.03142 (2017) - [i6]Jan Funke, Chong Zhang
, Tobias Pietzsch, Stephan Saalfeld:
The Candidate Multi-Cut for Cell Segmentation. CoRR abs/1707.00907 (2017) - [i5]Jan Funke, Fabian Tschopp, William Grisaitis
, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga:
A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs. CoRR abs/1709.02974 (2017) - 2015
- [i4]John A. Bogovic, Philipp Hanslovsky, Allan Wong, Stephan Saalfeld:
Robust Registration of Calcium Images by Learned Contrast Synthesis. CoRR abs/1511.01154 (2015) - [i3]Philipp Hanslovsky, John A. Bogovic, C. Shan Xu, Kenneth J. Hayworth, Zhiyuan Lu, Harald F. Hess, Stephan Saalfeld:
Image based compensation for thickness variation in microscopy section series. CoRR abs/1511.01161 (2015) - 2014
- [i2]Philipp Hanslovsky, John A. Bogovic, Stephan Saalfeld
:
Post-acquisition image based compensation for thickness variation in microscopy section series. CoRR abs/1411.6970 (2014) - [i1]Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch, Pavel Tomancak:
BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets. CoRR abs/1412.0488 (2014)
Coauthor Index
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last updated on 2024-08-25 19:14 CEST by the dblp team
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