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2020 – today
- 2024
[j24]Siru Liu, Allison B. McCoy
, Josh F. Peterson, Thomas A Lasko, Dean F. Sittig, Scott D. Nelson, Jennifer Andrews, Lorraine Patterson, Cheryl M. Cobb, David Mulherin, Colleen T. Morton, Adam Wright:
Leveraging explainable artificial intelligence to optimize clinical decision support. J. Am. Medical Informatics Assoc. 31(4): 968-974 (2024)- [j23]Siru Liu, Allison B. McCoy, Aileen P. Wright, Babatunde Carew, Julian Z. Genkins, Sean S. Huang, Josh F. Peterson, Bryan D. Steitz, Adam Wright:
Leveraging large language models for generating responses to patient messages - a subjective analysis. J. Am. Medical Informatics Assoc. 31(6): 1367-1379 (2024) - [j22]Siru Liu, Aileen P. Wright, Allison B. McCoy, Sean S. Huang, Julian Z. Genkins, Josh F. Peterson, Yaa A. Kumah-Crystal, William Martinez, Babatunde Carew, Dara Mize, Bryan D. Steitz, Adam Wright:
Using large language model to guide patients to create efficient and comprehensive clinical care message. J. Am. Medical Informatics Assoc. 31(8): 1665-1670 (2024) - [j21]Chao Yan, Henry H. Ong, Monika E. Grabowska, Matthew S. Krantz, Wu-Chen Su, Alyson L. Dickson, Josh F. Peterson, QiPing Feng, Dan M. Roden, C. Michael Stein, Vern Eric Kerchberger, Bradley A. Malin, Wei-Qi Wei:
Large language models facilitate the generation of electronic health record phenotyping algorithms. J. Am. Medical Informatics Assoc. 31(9): 1994-2001 (2024) - [j20]Chao Yan, Monika E. Grabowska, Alyson L. Dickson, Bingshan Li, Zhexing Wen, Dan M. Roden, C. Michael Stein, Peter J. Embí, Josh F. Peterson, QiPing Feng, Bradley A. Malin, Wei-Qi Wei:
Leveraging generative AI to prioritize drug repurposing candidates for Alzheimer's disease with real-world clinical validation. npj Digit. Medicine 7(1) (2024) - 2023
- [j19]Vern Eric Kerchberger, Josh F. Peterson, Wei-Qi Wei:
Scanning the medical phenome to identify new diagnoses after recovery from COVID-19 in a US cohort. J. Am. Medical Informatics Assoc. 30(2): 233-244 (2023) - [j18]Fuchen Li, Patrick Wu, Henry H. Ong, Josh F. Peterson, Wei-Qi Wei, Juan Zhao:
Evaluating and mitigating bias in machine learning models for cardiovascular disease prediction. J. Biomed. Informatics 138: 104294 (2023) - 2022
- [c24]Jodell E. Linder, Ran Tao, Ni Ketut Wilmayani, Marc S. Williams, Josh F. Peterson:
High-throughput assessment of genomic outcomes: development and validation of the HI-TAG knowledgebase. AMIA 2022 - 2021
- [j17]Luke V. Rasmussen, John J. Connolly, Guilherme Del Fiol, Robert R. Freimuth, Douglas B. Pet, Josh F. Peterson, Brian H. Shirts, Justin B. Starren, Marc S. Williams, Nephi Walton, Casey Overby Taylor:
Infobuttons for Genomic Medicine: Requirements and Barriers. Appl. Clin. Inform. 12(02): 383-390 (2021) - [j16]Neil S. Zheng, Jeremy L. Warner, Travis J. Osterman, Quinn Stanton Wells, Xiao-Ou Shu, Stephen A. Deppen, Seth J. Karp, Shon Dwyer, QiPing Feng, Nancy J. Cox, Josh F. Peterson, C. Michael Stein, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei:
A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19. J. Biomed. Informatics 113: 103657 (2021) - [j15]Juan Zhao, Monika E. Grabowska, Vern Eric Kerchberger, Joshua C. Smith, H. Nur Eken, QiPing Feng, Josh F. Peterson, S. Trent Rosenbloom, Kevin B. Johnson, Wei-Qi Wei:
ConceptWAS: A high-throughput method for early identification of COVID-19 presenting symptoms and characteristics from clinical notes. J. Biomed. Informatics 117: 103748 (2021) - [j14]Sarah DeLozier, Sarah Bland, Melissa McPheeters, Quinn Stanton Wells, Eric Farber-Eger, Cosmin Adrian Bejan, Daniel Fabbri, S. Trent Rosenbloom, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei, Josh F. Peterson, Lisa Bastarache:
Phenotyping coronavirus disease 2019 during a global health pandemic: Lessons learned from the characterization of an early cohort. J. Biomed. Informatics 117: 103777 (2021) - [c23]Sarah DeLozier, Josh F. Peterson, Joshua C. Denny, Lisa Bastarache:
Using Genomic Association Replication Rates as an EHR Quality Measure via the Phenotype-Genotype Reference Map (PGRM). AMIA 2021 - [c22]Spiros C. Denaxas, Ge Liu, QiPing Feng, Ghazaleh Fatemifar, Lisa Bastarache, Vern Eric Kerchberger, Aroon D. Hingorani, R. Tom Lumbers, Josh F. Peterson, Wei-Qi Wei, Harry Hemingway:
Mapping the Read2/CTV3 controlled clinical terminologies to Phecodes in UK Biobank primary care electronic health records: implementation and evaluation. AMIA 2021
2010 – 2019
- 2019
- [j13]Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo, Peggy L. Peissig, Justin B. Starren:
Pharmacogenomic clinical decision support design and multi-site process outcomes analysis in the eMERGE Network. J. Am. Medical Informatics Assoc. 26(2): 143-148 (2019) - [c21]Paul R. Dexter, Henry H. Ong, Amanda Elsey, Gillian Bell, Nephi Walton, Wendy K. Chung, Luke V. Rasmussen, J. Kevin Hicks, Aniwaa Owusu-obeng, Stuart A. Scott, Stephen B. Ellis, Josh F. Peterson:
Development of a Genomic Data Flow Framework: Results of a Survey Administered to NIH-NHGRI IGNITE and eMERGE Consortia Participants. AMIA 2019 - [c20]Andrea H. Ramirez, Yaping Shi, Elliot M. Fielstein, Jonathan S. Schildcrout, Henry H. Ong, Joshua C. Denny, Josh F. Peterson:
Extracting Drug Exposure Epochs and Drug Response Outcomes from Electronic Health Records. AMIA 2019 - 2018
- [j12]Samuel J. Aronson, Lawrence J. Babb, Darren C. Ames, Richard A. Gibbs, Eric Venner, John J. Connelly, Keith Marsolo, Chunhua Weng, Marc S. Williams, Andrea L. Hartzler, Wayne H. Liang, James D. Ralston, Emily Beth Devine, Shawn N. Murphy, Christopher G. Chute, Pedro J. Caraballo, Iftikhar J. Kullo, Robert R. Freimuth, Luke V. Rasmussen, Firas H. Wehbe, Josh F. Peterson, Jamie R. Robinson, Ken Wiley, Casey Overby Taylor, eMERGE Network EHRI Working Group:
Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. J. Am. Medical Informatics Assoc. 25(10): 1375-1381 (2018) - [c19]James M. Hoffman, Josh F. Peterson, Naveen Muthu, Henry M. Dunnenberger:
Preemptive Clinical Decision Support: Delivering Precise Information Clinicians Will Actually Use to Prevent Harm. AMIA 2018 - [c18]Josh F. Peterson, Henry H. Ong, Julie A. Lynch, J. Kevin Hicks, Paul R. Dexter:
Development and Implementation of Genomic Data Pipelines within US institutions: A pilot multi-site survey among NHGRI's IGNITE Genomic Medicine Sites. AMIA 2018 - [c17]Andrea H. Ramirez, Elliot M. Fielstein, QiPing Feng, Henry H. Ong, Jonathan S. Schildcrout, Yaping Shi, Joshua C. Denny, Josh F. Peterson:
EHR Extraction of Longitudinal Exposure to Proton Pump Inhibitors. AMIA 2018 - 2017
- [c16]Laura K. Wiley, Jacob P. VanHouten, David Samuels, Melinda Aldrich, Dan M. Roden, Josh F. Peterson, Joshua C. Denny:
Strategies for Equitable Pharmacogenomic-Guided Warfarin Dosing Among European and African American Individuals in a Clinical Population. PSB 2017: 545-556 - 2016
- [j11]James M. Hoffman, Henry M. Dunnenberger, J. Kevin Hicks, Kelly E. Caudle, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Teri E. Klein, Josh F. Peterson:
Developing knowledge resources to support precision medicine: principles from the Clinical Pharmacogenetics Implementation Consortium (CPIC). J. Am. Medical Informatics Assoc. 23(4): 796-801 (2016) - [c15]Timothy M. Herr, Josh F. Peterson, Luke V. Rasmussen, Pedro J. Caraballo:
Implementing Pharmacogenomic Clinical Decision Support: Design and Prescriber Response in the eMERGE Network. AMIA 2016 - [c14]James M. Hoffman, Henry M. Dunnenberger, Jonathan D. Burlison, Michelle Whirl Carrillo, Robert R. Freimuth, Marc S. Williams, Stuart A. Scott, Josh F. Peterson, Heidi L. Rehm, Teri E. Klein, Mary V. Relling, Kelly E. Caudle:
The Clinical Pharmacogenetics Implementation Consortium (CPIC) Term Standardization for Clinical Pharmacogenetic Test Results: Alleles and Phenotypes. CRI 2016 - [c13]Laura K. Wiley, Marc Beller, Julie Field, Josh F. Peterson, Joshua C. Denny:
Evaluating Physician Response to Pharmacogenomic-Guided Warfarin Dosing in an Hospitalized Population. CRI 2016 - 2015
- [j10]Robert M. Cronin, Jacob P. VanHouten, Edward D. Siew, Svetlana K. Eden, Stephan D. Fihn, Christopher D. Nielson, Josh F. Peterson, Clifton R. Baker, T. Alp Ikizler, Theodore Speroff, Michael E. Matheny:
National Veterans Health Administration inpatient risk stratification models for hospital-acquired acute kidney injury. J. Am. Medical Informatics Assoc. 22(5): 1054-1071 (2015) - [j9]Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby:
CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. J. Am. Medical Informatics Assoc. 22(6): 1231-1242 (2015) - [c12]Josh F. Peterson, Marc S. Williams, Casey L. Overby, Robert R. Freimuth, Iftikhar J. Kullo:
Public Implementation Resources for Genomic Medicine. AMIA 2015 - 2014
- [c11]Casey L. Overby, Luke V. Rasmussen, Andrea L. Hartzler, John J. Connolly, Josh F. Peterson, RoseMary Hedberg, Robert R. Freimuth, Brian H. Shirts, Joshua C. Denny, Eric B. Larson, Christopher G. Chute, Gail P. Jarvik, James D. Ralston, Alan R. Shuldiner, Iftikhar J. Kullo, Peter Tarczy-Hornoch, Marc S. Williams:
A Template for Authoring and Adapting Genomic Medicine Content in the eMERGE Infobutton Project. AMIA 2014 - 2013
- [c10]Ioana Danciu, Josh F. Peterson:
Analyzing the Impact of Pharmacogenomics on Clinical Practice: A Visual Method. AMIA 2013 - [c9]Laura K. Wiley, Josh F. Peterson, Joshua C. Denny, William S. Bush:
Establishing the Need for Personalized Medicine: Simvastatin Exposure Among a SLCO1B1 Variant Population. AMIA 2013 - 2012
- [j8]Allison B. McCoy, Lemuel R. Waitman, Julia B. Lewis, Julie A. Wright, David P. Choma, Randolph A. Miller, Josh F. Peterson:
Focus on health information technology, electronic health records and their financial impact: A framework for evaluating the appropriateness of clinical decision support alerts and responses. J. Am. Medical Informatics Assoc. 19(3): 346-352 (2012) - 2010
- [j7]Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson:
Extracting timing and status descriptors for colonoscopy testing from electronic medical records. J. Am. Medical Informatics Assoc. 17(4): 383-388 (2010)
2000 – 2009
- 2009
- [j6]Joshua C. Denny, Randolph A. Miller, Lemuel R. Waitman, Mark Arrieta, Josh F. Peterson:
Identifying QT prolongation from ECG impressions using a general-purpose Natural Language Processor. Int. J. Medical Informatics 78(Supplement-1): S34-S42 (2009) - [j5]Joshua C. Denny, Anderson Spickard III, Kevin B. Johnson, Neeraja B. Peterson, Josh F. Peterson, Randolph A. Miller:
Research Paper: Evaluation of a Method to Identify and Categorize Section Headers in Clinical Documents. J. Am. Medical Informatics Assoc. 16(6): 806-815 (2009) - [c8]Joshua C. Denny, Josh F. Peterson, Neesha N. Choma, Hua Xu, Randolph A. Miller, Lisa Bastarache, Neeraja B. Peterson:
Development of a Natural Language Processing System to Identify Timing and Status of Colonoscopy Testing in Electronic Medical Records. AMIA 2009 - 2007
- [j4]Fern FitzHenry, Josh F. Peterson, Mark Arrieta, Lemuel R. Waitman, Jonathan S. Schildcrout, Randolph A. Miller:
Research Paper: Medication Administration Discrepancies Persist Despite Electronic Ordering. J. Am. Medical Informatics Assoc. 14(6): 756-764 (2007) - [c7]Josh F. Peterson, Benjamin P. Rosenbaum, Lemuel R. Waitman, Ralf Habermann, James S. Powers, Debbie Harrell, Randolph A. Miller:
Physicians' Response to Guided Geriatric Dosing: Initial Results from a Randomized Trial. MedInfo 2007: 1037-1040 - [c6]Joshua C. Denny, Josh F. Peterson:
Identifying QT prolongation from ECG impressions using Natural Language Processing and Negation Detection. MedInfo 2007: 1283-1288 - 2005
- [c5]Joshua C. Denny, Anderson Spickard III, Randolph A. Miller, Jonathan S. Schildcrout, Dawood Darbar, S. Trent Rosenbloom, Josh F. Peterson:
Identifying UMLS concepts from ECG Impressions using Knowledge Map. AMIA 2005 - [c4]Fern FitzHenry, Josh F. Peterson, Mark Arrieta, Randolph A. Miller:
Measuring the Quality of Medication Administration. AMIA 2005 - 2003
- [j3]Harvey J. Murff, Alan J. Forster, Josh F. Peterson, Julie M. Fiskio, Heather L. Heiman, David W. Bates:
Research Paper: Electronically Screening Discharge Summaries for Adverse Medical Events. J. Am. Medical Informatics Assoc. 10(4): 339-350 (2003) - [c3]S. Trent Rosenbloom, Joseph Awad, Theodore Speroff, Peter L. Elkin, Russell L. Rothman, Anderson Spickard III, Josh F. Peterson, Brent A. Bauer, Dietlind Wahner-Roedler, Mark Lee, William M. Gregg, Kevin B. Johnson, Jim Jirjis, Mark Erlbaum, John S. Carter, Michael J. Lincoln, Steven H. Brown:
Adequacy of representation of the National Drug File Reference Terminology Physiologic Effects reference hierarchy for commonly prescribed medications. AMIA 2003 - 2002
- [j2]Josh F. Peterson, Deborah H. Williams, Andrew C. Seger, Tejal K. Gandhi, David W. Bates:
Poster Abstract: Drug-Lab Triggers Have Potential to Prevent Adverse Drug Events in Outpatients. J. Am. Medical Informatics Assoc. 9(Supplement): 39-40 (2002) - [j1]Harvey J. Murff, Alan J. Forster, Josh F. Peterson, Julie M. Fiskio, Heather L. Heiman, David W. Bates:
Poster Abstract: Electronically Screening Discharge Summaries for Adverse Medical Events. J. Am. Medical Informatics Assoc. 9(Supplement): 50-51 (2002) - [c2]Josh F. Peterson, David W. Bates, Minal Patel, Jerry Avorn, Gilad J. Kuperman:
Gerios: Recommending Drugs and Dosing for Elderly Patients. AMIA 2002 - 2001
- [c1]Josh F. Peterson, Deborah H. Williams, Andy Seger, Tejal K. Gandhi, David W. Bates:
Drug-Lab Triggers Have Potential to Prevent Adverse Drug Events in Outpatients. AMIA 2001
Coauthor Index
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