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2010 – 2019
- 2018
[j9]Nga Thi Thuy Nguyen, Bruno Contreras-Moreira
, Jaime Abraham Castro-Mondragón, Walter Santana-Garcia, Raul Ossio, Carla Daniela Robles-Espinoza, Mathieu Bahin, Samuel Collombet, Pierre Vincens, Denis Thieffry, Jacques van Helden, Alejandra Medina-Rivera, Morgane Thomas-Chollier:
RSAT 2018: regulatory sequence analysis tools 20th anniversary. Nucleic Acids Res. 46(Webserver-Issue): W209-W214 (2018)- 2015
- [j8]Alejandra Medina-Rivera, Matthieu Defrance, Olivier Sand, Carl Herrmann, Jaime Abraham Castro-Mondragón, Jeremy Delerce, Sébastien Jaeger, Christophe Blanchet, Pierre Vincens, Christophe Caron, Daniel M. Staines, Bruno Contreras-Moreira, Marie Artufel, Lucie Charbonnier-Khamvongsa, Céline Hernandez, Denis Thieffry, Morgane Thomas-Chollier, Jacques van Helden:
RSAT 2015: Regulatory Sequence Analysis Tools. Nucleic Acids Res. 43(Webserver-Issue): W50-W56 (2015) - 2014
- [j7]Álvaro Sebastián, Bruno Contreras-Moreira:
footprintDB: a database of transcription factors with annotated cis elements and binding interfaces. Bioinform. 30(2): 258-265 (2014) - 2010
- [j6]Bruno Contreras-Moreira:
3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic Acids Res. 38(Database-Issue): 91-97 (2010) - [c2]Álvaro Sebastián, Carlos P. Cantalapiedra, Bruno Contreras-Moreira:
Interface Similarity Improves Comparison of DNA-Binding Proteins: The Homeobox Example. JBI 2010: 72-82
2000 – 2009
- 2009
- [j5]Bruno Contreras-Moreira, Bernardo Sachman-Ruiz, Iraís Figueroa-Palacios, Pablo Vinuesa:
primers4clades: a web server that uses phylogenetic trees to design lineage-specific PCR primers for metagenomic and diversity studies. Nucleic Acids Res. 37(Web-Server-Issue): 95-100 (2009) - 2008
- [j4]Vladimir Espinosa Angarica, Abel González Pérez, Ana Tereza Ribeiro de Vasconcelos, Julio Collado-Vides, Bruno Contreras-Moreira:
Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinform. 9 (2008) - [j3]Socorro Gama-Castro, Verónica Jiménez-Jacinto, Martín Peralta-Gil, Alberto Santos-Zavaleta, Mónica I. Peñaloza-Spínola, Bruno Contreras-Moreira, Juan Segura-Salazar, Luis Muñiz-Rascado, Irma Martínez-Flores, Heladia Salgado, César Bonavides-Martínez, Cei Abreu-Goodger, Carlos Rodríguez Penagos, Juan Miranda-Ríos, Enrique Morett, Enrique Merino, Araceli M. Huerta, Luis Treviño-Quintanilla, Julio Collado-Vides:
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Res. 36(Database-Issue): 120-124 (2008) - 2007
- [j2]Bruno Contreras-Moreira, Pierre-Alain Branger, Julio Collado-Vides:
TFmodeller: comparative modelling of protein-DNA complexes. Bioinform. 23(13): 1694-1696 (2007) - 2006
- [c1]Bruno Contreras-Moreira, Julio Collado-Vides:
Comparative footprinting of DNA-binding proteins. ISMB (Supplement of Bioinformatics) 2006: 74-80 - 2002
- [j1]Bruno Contreras-Moreira, Paul A. Bates:
Domain Fishing: a first step in protein comparative modelling. Bioinform. 18(8): 1141-1142 (2002)
Coauthor Index
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