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Lars Arvestad
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2010 – 2019
- 2018
- [j17]Wandrille Duchemin
, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad
, Mukul S. Bansal
, Vincent Berry
, Bastien Boussau, François Chevenet
, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz
, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada
, Céline Scornavacca, Gergely J. Szöllosi
, Louxin Zhang, Eric Tannier, Vincent Daubin:
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34(21): 3646-3652 (2018) - [j16]Lars Arvestad
:
alv: a console-based viewer for molecular sequence alignments. J. Open Source Softw. 3(31): 955 (2018) - 2017
- [j15]Raja Ali
, Mikael Bark, Jorge Miró, Sayyed Muhammad
, Joel Sjöstrand, Syed M. Zubair, Raja M. Abbas, Lars Arvestad
:
VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces. BMC Bioinform. 18(1): 97:1-97:8 (2017) - [j14]Kristoffer Sahlin
, Mattias Frånberg, Lars Arvestad
:
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias. J. Comput. Biol. 24(6): 581-589 (2017) - 2016
- [j13]Kristoffer Sahlin
, Rayan Chikhi, Lars Arvestad
:
Assembly scaffolding with PE-contaminated mate-pair libraries. Bioinform. 32(13): 1925-1932 (2016) - [j12]Mehmood Alam Khan, Owais Mahmudi, Ikram Ullah, Lars Arvestad
, Jens Lagergren
:
Probabilistic inference of lateral gene transfer events. BMC Bioinform. 17(S-14): 263-270 (2016) - [c5]Kristoffer Sahlin
, Mattias Frånberg, Lars Arvestad:
Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias. RECOMB 2016: 176-188 - 2015
- [c4]Riccardo Vicedomini
, Francesco Vezzi, Simone Scalabrin, Lars Arvestad
, Alberto Policriti
:
Hierarchical Assembly of Pools. IWBBIO (2) 2015: 207-218 - 2014
- [j11]Kristoffer Sahlin
, Francesco Vezzi, Björn Nystedt
, Joakim Lundeberg, Lars Arvestad
:
BESST - Efficient scaffolding of large fragmented assemblies. BMC Bioinform. 15: 281 (2014) - 2013
- [j10]Joel Sjöstrand
, Lars Arvestad
, Jens Lagergren
, Bengt Sennblad:
GenPhyloData: realistic simulation of gene family evolution. BMC Bioinform. 14: 209 (2013) - [j9]Mehmood Alam Khan, Isaac Elias, Erik Sjölund, Kristina Nylander, Roman Valls Guimera, Richard Schobesberger, Peter Schmitzberger, Jens Lagergren
, Lars Arvestad
:
fastphylo: Fast tools for phylogenetics. BMC Bioinform. 14: 334 (2013) - [j8]Raja Ali, Sayyed Muhammad
, Mehmood Alam Khan, Lars Arvestad
:
Quantitative synteny scoring improves homology inference and partitioning of gene families. BMC Bioinform. 14(S-15): S12 (2013) - [j7]Riccardo Vicedomini
, Francesco Vezzi, Simone Scalabrin, Lars Arvestad
, Alberto Policriti
:
GAM-NGS: genomic assemblies merger for next generation sequencing. BMC Bioinform. 14(S-7): S6 (2013) - 2012
- [j6]Kristoffer Sahlin
, Nathaniel Street
, Joakim Lundeberg, Lars Arvestad
:
Improved gap size estimation for scaffolding algorithms. Bioinform. 28(17): 2215-2222 (2012) - [j5]Joel Sjöstrand
, Bengt Sennblad, Lars Arvestad
, Jens Lagergren
:
DLRS: gene tree evolution in light of a species tree. Bioinform. 28(22): 2994-2995 (2012) - 2010
- [j4]Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson
, Lars Arvestad
, Joakim Lundeberg:
Classification of DNA sequences using Bloom filters. Bioinform. 26(13): 1595-1600 (2010)
2000 – 2009
- 2009
- [j3]Lars Arvestad
, Jens Lagergren, Bengt Sennblad:
The gene evolution model and computing its associated probabilities. J. ACM 56(2): 7:1-7:44 (2009) - 2007
- [j2]Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren
, Lars Arvestad
:
primetv: a viewer for reconciled trees. BMC Bioinform. 8 (2007) - 2006
- [j1]Örjan Svensson, Lars Arvestad
, Jens Lagergren
:
Genome-Wide Survey for Biologically Functional Pseudogenes. PLoS Comput. Biol. 2(5) (2006) - 2004
- [c3]Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad:
Gene tree reconstruction and orthology analysis based on an integrated model for duplications and sequence evolution. RECOMB 2004: 326-335 - 2003
- [c2]Lars Arvestad, Ann-Charlotte Berglund, Jens Lagergren, Bengt Sennblad:
Bayesian gene/species tree reconciliation and orthology analysis using MCMC. ISMB (Supplement of Bioinformatics) 2003: 7-15
1990 – 1999
- 1997
- [c1]Lars Arvestad
:
Aligning Coding DNA in the Presence of Frame-Shift Errors. CPM 1997: 180-190
Coauthor Index
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