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2020 – today
- 2024
[j46]Christina Khnaisser
, Vincent Looten, Luc Lavoie, Anita Burgun, Jean-François Ethier:
Building ontology-based temporal databases for data reuse: An applied example on hospital organizational structures. Health Informatics J. 30(2) (2024)- [j45]Julie Michel, Aurélia Manns, Sofia Boudersa, Côme Jaubert, Laurent Dupic, Benoît Vivien, Anita Burgun, Florence Campeotto, Rosy Tsopra:
Clinical decision support system in emergency telephone triage: A scoping review of technical design, implementation and evaluation. Int. J. Medical Informatics 184: 105347 (2024) - [j44]Carole Faviez, Xiaoyi Chen, Nicolas Garcelon, Mohamad Zaidan, Katy Billot, Friederike Petzold, Hassan Faour, Maxime Douillet, Jean-Michel Rozet, Valerie Cormier-Daire, Tania Attié-Bitach, Stanislas Lyonnet, Sophie Saunier, Anita Burgun:
Objectivizing issues in the diagnosis of complex rare diseases: lessons learned from testing existing diagnosis support systems on ciliopathies. BMC Medical Informatics Decis. Mak. 24(1): 134 (2024) - 2023
- [j43]Rosy Tsopra, Nathan Peiffer-Smadja, Caroline Charlier, Florence Campeotto, Cédric Lemogne, Philippe Ruszniewski, Benoît Vivien, Anita Burgun:
Putting undergraduate medical students in AI-CDSS designers' shoes: An innovative teaching method to develop digital health critical thinking. Int. J. Medical Informatics 171: 104980 (2023) - [c90]Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Antoine Neuraz, Anita Burgun, Nicolas Garcelon:
The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. MIE 2023: 247-251 - [c89]Xiaoyi Chen, Carole Faviez, Marc Vincent, Sophie Saunier, Nicolas Garcelon, Anita Burgun:
Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives. MIE 2023: 1037-1041 - [i5]Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Anita Burgun, Antoine Neuraz, Nicolas Garcelon:
The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. CoRR abs/2308.16537 (2023) - 2022
- [c88]Safa Alsaidi, Miguel Couceiro, Esteban Marquer, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet:
An analogy based framework for patient-stay identification in healthcare. ICCBR Workshops 2022: 68-80 - [c87]Adrien Boukobza, Maxime Wack, Antoine Neuraz, Daniela Geromin, Cécile Badoual, Anne-Sophie Bats, Anita Burgun, Meriem Koual, Rosy Tsopra:
Determining the Set of Items to Include in Breast Operative Reports, Using Clustering Algorithms on Retrospective Data Extracted from Clinical DataWarehouse. ICIMTH 2022: 45-48 - [c86]Safa Alsaidi, Miguel Couceiro, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet:
Exploring Analogical Inference in Healthcare. IARML@IJCAI 2022: 40-50 - [c85]Edouard Michot, Jules Woo, Louis Mouline, Catherine Sinnappan, Adrien Boukobza, Florence Campeotto, Laurent Dupic, Anita Burgun, Benoît Vivien, Rosy Tsopra:
Towards a Clinical Decision Support System for Helping Medical Students in Emergency Call Centers. MIE 2022: 425-429 - [c84]Claire Durchon, Stephi Vanderlan, Alice Jegard, Hasini Saram, Marina Falchi, Florence Campeotto, Laurent Dupic, Anita Burgun, Benoît Vivien, Rosy Tsopra:
An Interactive Interface for Displaying Recommendations on Emergency Phone Triage in Pediatrics. MIE 2022: 430-434 - [c83]Maxime Wack, David Veyer, Camille Peneau, Sonia Lameiras, William Digan, Alain Nicolas, Jessica Zucman-Rossi, Sandrine Imbeaud, Anita Burgun, Hélène Péré, Bastien Rance:
viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome. MIE 2022: 834-838 - [c82]Carole Faviez, Marc Vincent, Nicolas Garcelon, Caroline Michot, Geneviève Baujat, Valerie Cormier-Daire, Sophie Saunier, Xiaoyi Chen, Anita Burgun:
Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome. MIE 2022: 844-848 - 2021
- [j42]William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance:
Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. J. Am. Medical Informatics Assoc. 28(3): 504-515 (2021) - [j41]Rosy Tsopra, Xosé M. Fernández, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, Osman Ugur Sezerman, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Mihai Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Nicolae Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Florian Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H. Okan Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabiles, Anita Burgun:
A framework for validating AI in precision medicine: considerations from the European ITFoC consortium. BMC Medical Informatics Decis. Mak. 21(1): 274 (2021) - [c81]William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, Anita Burgun, Bastien Rance:
Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. AMIA 2021 - [c80]Alexandre Saadi, Alice Rogier, Anita Burgun, Rosy Tsopra:
Design of an Ontology-Based Triage System for Patients with Chronic Pain. MedInfo 2021: 81-85 - [c79]Marc Vincent, Maxime Douillet, Ivan Lerner, Antoine Neuraz, Anita Burgun, Nicolas Garcelon:
Using Deep Learning to Improve Phenotyping from Clinical Reports. MedInfo 2021: 282-286 - [c78]Jean-Patrick Vrel, Samy Oulmane, Adrien Boukobza, Anita Burgun, Rosy Tsopra:
A COVID-19 Decision Support System for Phone Call Triage, Designed by and for Medical Students. MIE 2021: 525-529 - [c77]Xiaoyi Chen, Carole Faviez, Marc Vincent, Nicolas Garcelon, Sophie Saunier, Anita Burgun:
Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis. MIE 2021: 600-604 - [c76]Carole Faviez, Pierre Foulquié, Xiaoyi Chen, Adel Mebarki, Sophie Quennelle, Nathalie Texier, Sandrine Katsahian, Stéphane Schück, Anita Burgun:
Fuzzy Matching for Symptom Detection in Tweets: Application to Covid-19 During the First Wave of the Pandemic in France. MIE 2021: 896-900 - 2020
- [j40]Gabriel A. Brat, Griffin M. Weber, Nils Gehlenborg, Paul Avillach, Nathan P. Palmer, Luca Chiovato, James J. Cimino, Lemuel R. Waitman, Gilbert S. Omenn, Alberto Malovini, Jason H. Moore, Brett K. Beaulieu-Jones, Valentina Tibollo, Shawn N. Murphy, Sehi L'Yi, Mark S. Keller, Riccardo Bellazzi, David A. Hanauer, Arnaud Serret-Larmande, Alba Gutiérrez-Sacristán, John J. Holmes, Douglas S. Bell, Kenneth D. Mandl, Robert W. Follett, Jeffrey G. Klann, Douglas A. Murad, Luigia Scudeller, Mauro Bucalo, Katie G. Kirchoff, Jean B. Craig, Jihad S. Obeid, Vianney Jouhet, Romain Griffier, Sébastien Cossin, Bertrand Moal, Lav P. Patel, Antonio Bellasi, Hans-Ulrich Prokosch, Detlef Kraska, Piotr Sliz, Amelia L. M. Tan, Kee Yuan Ngiam, Alberto Zambelli, Danielle L. Mowery, Emily Schriver, Batsal Devkota, Robert L. Bradford, Mohamad Daniar, Christel Daniel, Vincent Benoit, Romain Bey, Nicolas Paris, Patricia Serre, Nina Orlova, Julien Dubiel, Martin Hilka, Anne-Sophie Jannot, Stéphane Bréant, Judith Leblanc, Nicolas Griffon, Anita Burgun, Mélodie Bernaux, Arnaud Sandrin, Elisa Salamanca, Sylvie Cormont, Thomas Ganslandt, Tobias Gradinger, Julien Champ, Martin Boeker, Patricia Martel, Loic Esteve, Alexandre Gramfort, Olivier Grisel, Damien Leprovost, Thomas Moreau, Gaël Varoquaux, Jill-Jênn Vie, Demian Wassermann, Arthur Mensch, Charlotte Caucheteux, Christian Haverkamp, Guillaume Lemaitre, Silvano Bosari, Ian D. Krantz, Andrew M. South, Tianxi Cai, Isaac S. Kohane:
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium. npj Digit. Medicine 3 (2020) - [c75]Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, Sophie Rosset:
The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding. MIE 2020: 432-436 - [i4]Ivan Lerner, Jordan Jouffroy, Anita Burgun, Antoine Neuraz:
Learning the grammar of prescription: recurrent neural network grammars for medication information extraction in clinical texts. CoRR abs/2004.11622 (2020)
2010 – 2019
- 2019
- [j39]Vincent Looten, Liliane Kong Win Chang, Antoine Neuraz, Marie-Anne Landau-Loriot, Benoit Vedie, Jean-Louis Paul, Laëtitia Mauge, Nadia Rivet, Angela Bonifati, Gilles Chatellier, Anita Burgun, Bastien Rance:
What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse. Comput. Methods Programs Biomed. 181 (2019) - [j38]Xiaoyi Chen, Nicolas Garcelon, Antoine Neuraz, Katy Billot, Marc Lelarge, Thomas Bonald, Hugo Garcia, Yoann Martin, Vincent Benoit, Marc Vincent, Hassan Faour, Maxime Douillet, Stanislas Lyonnet, Sophie Saunier, Anita Burgun:
Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping. J. Biomed. Informatics 100 (2019) - [c74]William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, Bastien Rance:
Evaluating the Impact of Text Duplications on a Corpus of More than 600, 000 Clinical Narratives in a French Hospital. MedInfo 2019: 103-107 - [c73]Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, Sophie Rosset:
Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task? MedInfo 2019: 1558-1559 - 2018
- [j37]Eric Zapletal, Jean-Emmanuel Bibault, Philippe Giraud, Anita Burgun:
Integrating Multimodal Radiation Therapy Data into i2b2. Appl. Clin. Inform. 09(02): 377-390 (2018) - [j36]Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, Arthur Delapalme, Arnold Munnich, Anita Burgun, Bastien Rance:
A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. J. Biomed. Informatics 80: 52-63 (2018) - [c72]Rodolphe Jantzen, Bastien Rance, Sandrine Katsahian, Anita Burgun, Vincent Looten:
The Need of an Open Data Quality Policy: The Case of the "Transparency - Health" Database in the Prevention of Conflict of Interest. MIE 2018: 611-615 - [i3]Simon Bussy, Raphaël Veil, Vincent Looten, Anita Burgun, Stéphane Gaïffas, Agathe Guilloux, Brigitte Ranque, Anne-Sophie Jannot:
Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework. CoRR abs/1807.09821 (2018) - [i2]Antoine Neuraz, Leonardo Campillos Llanos, Anita Burgun, Sophie Rosset:
Natural language understanding for task oriented dialog in the biomedical domain in a low resources context. CoRR abs/1811.09417 (2018) - 2017
- [j35]William Dunn Jr, Anita Burgun, Marie-Odile Krebs, Bastien Rance:
Exploring and visualizing multidimensional data in translational research platforms. Briefings Bioinform. 18(6): 1044-1056 (2017) - [j34]Adrien Barton, Jean-François Ethier, Régis Duvauferrier, Anita Burgun:
An ontological analysis of medical Bayesian indicators of performance. J. Biomed. Semant. 8(1): 1:1-1:13 (2017) - [j33]Anne-Sophie Jannot, Eric Zapletal, Paul Avillach, Marie-France Mamzer, Anita Burgun, Patrice Degoulet:
The Georges Pompidou University Hospital Clinical Data Warehouse: A 8-years follow-up experience. Int. J. Medical Informatics 102: 21-28 (2017) - [j32]Jean-François Ethier, Vasa Curcin, Mark M. McGilchrist, Sarah N. Lim Choi Keung, Lei Zhao, Anna Andreasson, Piotr Bródka, Radoslaw Michalski, Theodoros N. Arvanitis, Nikolaos Mastellos, Anita Burgun, Brendan C. Delaney:
eSource for clinical trials: Implementation and evaluation of a standards-based approach in a real world trial. Int. J. Medical Informatics 106: 17-24 (2017) - [j31]Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Anita Burgun:
Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse. J. Am. Medical Informatics Assoc. 24(3): 607-613 (2017) - [j30]Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Sven Kracker, Felipe Suarez, Nadia Bahi-Buisson, Smail Hadj-Rabia, Alain Fischer, Arnold Munnich, Anita Burgun:
Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack. J. Biomed. Informatics 73: 51-61 (2017) - [j29]Jean-Baptiste Escudié, Bastien Rance, Georgia Malamut, Sherine Khater, Anita Burgun, Christophe Cellier, Anne-Sophie Jannot:
A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease. BMC Medical Informatics Decis. Mak. 17(1): 140:1-140:10 (2017) - [c71]Christina Khnaisser, Luc Lavoie, Anita Burgun, Jean-François Ethier:
Past Indeterminacy in Data Warehouse Design. DEXA (2) 2017: 90-100 - [c70]Xiaoyi Chen, Myrtille Deldossi, Rim Aboukhamis, Carole Faviez, Badisse Dahamna, Pierre Karapetiantz, Armelle Guenegou-Arnoux, Yannick Girardeau, Sylvie Guillemin-Lanne, Agnès Lillo-Le Louët, Nathalie Texier, Anita Burgun, Sandrine Katsahian:
Mining Adverse Drug Reactions in Social Media with Named Entity Recognition and Semantic Methods. MedInfo 2017: 322-326 - [i1]Jean-François Ethier, Vasa Curcin, Mark M. McGilchrist, Sarah N. Lim Choi Keung, Lei Zhao, Anna Andreasson, Piotr Bródka, Radoslaw Michalski, Theodoros N. Arvanitis, Nikolaos Mastellos, Anita Burgun, Brendan C. Delaney:
eSource for clinical trials: Implementation and evaluation of a standards-based approach in a real world trial. CoRR abs/1707.07994 (2017) - 2016
- [j28]Vincent Canuel, Hector Countouris, Pierre Laurent-Puig, Anita Burgun, Bastien Rance:
Integrating Heterogeneous Biomedical Data for Cancer Research: the CARPEM infrastructure. Appl. Clin. Inform. 07(02): 260-274 (2016) - [j27]Dimitar Hristovski, Andrej Kastrin, Dejan Dinevski, Anita Burgun, Lovro Ziberna, Thomas C. Rindflesch:
Using Literature-Based Discovery to Explain Adverse Drug Effects. J. Medical Syst. 40(8): 185:1-185:5 (2016) - 2015
- [j26]Vincent Canuel, Bastien Rance, Paul Avillach, Patrice Degoulet, Anita Burgun:
Translational research platforms integrating clinical and omics data: a review of publicly available solutions. Briefings Bioinform. 16(2): 280-290 (2015) - [j25]Arnaud Rosier, Philippe Mabo, Michel Chauvin, Anita Burgun:
An Ontology-Based Annotation of Cardiac Implantable Electronic Devices to Detect Therapy Changes in a National Registry. IEEE J. Biomed. Health Informatics 19(3): 971-978 (2015) - [c69]Jean-Baptiste Escudié, Anne-Sophie Jannot, Eric Zapletal, Sarah Cohen Boulakia, Georgia Malamut, Anita Burgun, Bastien Rance:
Reviewing 741 patients records in two hours with FASTVISU. AMIA 2015 - [c68]Sarah N. Lim Choi Keung, Lei Zhao, Vasa Curcin, Jean-François Ethier, Anita Burgun, Mark M. McGilchrist, Piotr Bródka, Wodzimierz Tuligowicz, Brendan C. Delaney, Theodoros N. Arvanitis, Anna Andreasson:
Transform: Implementing a Learning Healthcare System in Europe through Embedding Clinical Research into Clinical Practice. HICSS 2015: 3176-3185 - [c67]Adrien Barton, Régis Duvauferrier, Anita Burgun:
Formalization of indicators of diagnostic performance in a realist ontology. ICBO 2015 - [c66]Anita Burgun, Dina V. Oksen, Wolfgang Kuchinke, Hans-Ulrich Prokosch, Thomas Ganslandt, Iain E. Buchan, Tjeerd Pieter van Staa, James A. Cunningham, Marianne L. Gjerstorff, Jean-Charles Dufour, Jean-François Gibrat, Macha Nikolski, Pierre Verger, Anne Cambon-Thomsen, Cristina Masella, Emanuele Lettieri, Paolo Bertele, Marjut Salokannel, Rodolphe Thiébaut, Charles Persoz, Geneviève Chêne, Christian Ohmann:
Proposal for a European Public Health Research Infrastructure for Sharing of health and Medical administrative data (PHRIMA). MedInfo 2015: 1005 - [c65]Sandrine Katsahian, Erica Simond Moreau, Damien Leprovost, Jérémy Lardon, Cédric Bousquet, Gaétan Kerdelhué, Redhouane Abdellaoui, Nathalie Texier, Anita Burgun, Abdelali Boussadi, Carole Faviez:
Evaluation of Internet Social Networks using Net scoring Tool: A Case Study in Adverse Drug Reaction Mining. MIE 2015: 526-530 - 2014
- [j24]Anne-Dominique Pham, Aurélie Névéol, Thomas Lavergne, Daisuke Yasunaga, Olivier Clément, Guy Meyer, Rémy Morello, Anita Burgun:
Natural language processing of radiology reports for the detection of thromboembolic diseases and clinically relevant incidental findings. BMC Bioinform. 15: 266 (2014) - [c64]Adrien Barton, Arnaud Rosier, Anita Burgun, Jean-François Ethier:
The Cardiovascular Disease Ontology. FOIS 2014: 409-414 - [c63]Nicolas Garcelon, Rémi Salomon, Anita Burgun:
Enrichissement sémantique associé à la détection de la négation et des antécédents familiaux dans un entrepôt de données hospitalier. JFIM 2014: 83-93 - 2013
- [j23]Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourde, Anita Burgun, Marc Cuggia:
OWL model of clinical trial eligibility criteria compatible with partially-known information. J. Biomed. Semant. 4: 17 (2013) - [j22]Jean-François Ethier, Olivier Dameron, Vasa Curcin, Mark M. McGilchrist, Robert A. Verheij, Theodoros N. Arvanitis, Adel Taweel, Brendan Delaney, Anita Burgun:
A unified structural/terminological interoperability framework based on LexEVS: application to TRANSFoRm. J. Am. Medical Informatics Assoc. 20(5): 986-994 (2013) - [j21]Antoine Neuraz, Laurent Chouchana, Georgia Malamut, Christine Le Beller, Denis Roche, Philippe Beaune, Patrice Degoulet, Anita Burgun, Marie-Anne Loriot, Paul Avillach:
Phenome-Wide Association Studies on a Quantitative Trait: Application to TPMT Enzyme Activity and Thiopurine Therapy in Pharmacogenomics. PLoS Comput. Biol. 9(12) (2013) - [c62]Dimitar Hristovski, Anita Burgun-Parenthoine, Paul Avillach, Thomas C. Rindflesch:
Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects. AMIA 2013 - 2012
- [j20]Charles Bettembourg, Christian Diot, Anita Burgun, Olivier Dameron:
GO2PUB: Querying PubMed with semantic expansion of gene ontology terms. J. Biomed. Semant. 3: 7 (2012) - [c61]Dimitar Hristovski, Anita Burgun, Paul Avillach, Thomas C. Rindflesch:
Using Literature-based Discovery to Explain Drug Adverse Effects. AMIA 2012 - [c60]Adrien Barton, Anita Burgun, Régis Duvauferrier:
Probability assignments to dispositions in ontologies. FOIS 2012: 3-14 - [c59]Fleur Mougin, Anita Burgun, Olivier Bodenreider:
Comparing drug-class membership in ATC and NDF-RT. IHI 2012: 437-444 - [c58]Jérémy Lasbleiz, John Morelli, Nicolas Schnel, Anita Burgun, Régis Duvauferrier, Hervé Saint-Jalmes:
MRI image artifact ontology: A Proposed Method for Improved Recognition. MIE 2012: 103-107 - [c57]Pascal Van Hille, Julie Jacques, Julien Taillard, Arnaud Rosier, David Delerue, Anita Burgun, Olivier Dameron:
Comparing Drools and ontology reasoning approaches for telecardiology decision support. MIE 2012: 300-304 - [c56]Olivier Dameron, Paolo Besana, Oussama Zekri, Annabel Bourde, Anita Burgun, Marc Cuggia:
OWL Model of Clinical Trial Eligibility Criteria Compatible with Partially-known Information. SWAT4LS 2012 - 2011
- [c55]Jérémy Lasbleiz, Hervé Saint-Jalmes, Régis Duvauferrier, Anita Burgun:
Creating a Magnetic Resonance Imaging Ontology. MIE 2011: 784-788 - 2010
- [c54]Nicolas Lebreton, Christophe Blanchet, Daniela Barreiro Claro, Julie Chabalier, Anita Burgun, Olivier Dameron:
Verification of parameters semantic compatibility for semi-automatic web service composition: a generic case study. iiWAS 2010: 845-848 - [c53]Denis Delamarre, Agnès Lillo-Le Louët, Laetitia Guillot, Anne Jamet, Eric Sadou, Theo Ouazine, Anita Burgun, Marie-Christine Jaulent:
Documentation in Pharmacovigilance: Using an ontology to extend and normalize Pubmed queries. MedInfo 2010: 518-522 - [c52]Lynda Temal, Arnaud Rosier, Olivier Dameron, Anita Burgun:
Mapping BFO and DOLCE. MedInfo 2010: 1065-1069 - [c51]Olivier Bodenreider, Anita Burgun:
A Framework for Comparing Phenotype Annotations of Orthologous Genes. MedInfo 2010: 1309-1313 - [c50]Paolo Besana, Marc Cuggia, Oussama Zekri, Annabel Bourde, Anita Burgun:
Using Semantic Web Technologies for Clinical Trial Recruitment. ISWC (2) 2010: 34-49 - [c49]Paolo Besana, Marc Cuggia, Oussama Zekri, Annabel Bourde, Anita Burgun:
From French EHR to NCI ontology via UMLS. OM 2010
2000 – 2009
- 2009
- [j19]Fleur Mougin, Olivier Bodenreider, Anita Burgun:
Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS. J. Biomed. Informatics 42(3): 440-451 (2009) - [c48]Anita Burgun, Fleur Mougin, Olivier Bodenreider:
Two approaches to integrating phenotype and clinical information. AMIA 2009 - [c47]Florence Amardeilh, Cédric Bousquet, Sylvie Guillemin-Lanne, Mathilde Wiss-Thébault, Laetitia Guillot, Denis Delamarre, Agnès Lillo-Le Louët, Anita Burgun:
A Knowledge Management Platform for Documentation of Case Reports in Pharmacovigilance. MIE 2009: 517-521 - [c46]Fleur Mougin, Olivier Bodenreider, Anita Burgun:
Identifying anatomical concepts associated with ICD10 diseases. TIA 2009 - 2008
- [j18]Valérie Bertaud, Jérémy Lasbleiz, Fleur Mougin, Anita Burgun, Régis Duvauferrier:
A unified representation of findings in clinical radiology using the UMLS and DICOM. Int. J. Medical Informatics 77(9): 621-629 (2008) - [c45]Arnaud Rosier, Anita Burgun, Philippe Mabo:
Using regular expressions to extract information on pacemaker implantation procedures from clinical reports. AMIA 2008 - [c44]Fleur Mougin, Anita Burgun, Olivier Bodenreider, Julie Chabalier, Olivier Loréal, Pierre Le Beux:
Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System. DILS 2008: 61-76 - [c43]Delphine Rossille, Anita Burgun, Céline Pangault-Lorho, Thierry Fest:
Integrating clinical, gene expression, protein expression and preanalytical data for in silico cancer research. MIE 2008: 455-460 - 2007
- [j17]Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun:
Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. Artif. Intell. Medicine 39(3): 183-195 (2007) - [j16]Julie Chabalier, Jean Mosser, Anita Burgun:
A transversal approach to predict gene product networks from ontology-based similarity. BMC Bioinform. 8 (2007) - [j15]Gwenaëlle Marquet, Jean Mosser, Anita Burgun:
A method exploiting syntactic patterns and the UMLS semantics for aligning biomedical ontologies: The case of OBO disease ontologies. Int. J. Medical Informatics 76(S3): S353-S361 (2007) - [c42]Gwenaëlle Marquet, Olivier Dameron, Stephan Saikali, Jean Mosser, Anita Burgun:
Grading glioma tumors using OWL-DL and NCI Thesaurus. AMIA 2007 - [c41]Fleur Mougin, Julie Chabalier, Olivier Bodenreider, Anita Burgun:
Méthodes de mapping situées aux niveaux instance et schéma pour l'intégration de sources de données hétérogènes. Actes d'IC 2007: 37-49 - [c40]Julie Chabalier, Jean Mosser, Anita Burgun:
Integrating Biological Pathways in Disease Ontologies. MedInfo 2007: 791-795 - 2006
- [j14]Marc Aubry, Annabelle Monnier, Celine Chicault, Marie de Tayrac, Marie-Dominique Galibert, Anita Burgun, Jean Mosser:
Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets. BMC Bioinform. 7: 241 (2006) - [j13]Fleur Mougin, Anita Burgun, Olivier Bodenreider:
Mapping data elements to terminological resources for integrating biomedical data sources. BMC Bioinform. 7(S-3) (2006) - [j12]Anita Burgun, Stéfan Jacques Darmoni, Franck Le Duff, Jacques Wéber:
Problem-based learning in medical informatics for undergraduate medical students: An experiment in two medical schools. Int. J. Medical Informatics 75(5): 396-402 (2006) - [j11]Paul Fabry, Robert H. Baud, Anita Burgun, Christian Lovis:
Amplification of Terminologia anatomica by French language terms using Latin terms matching algorithm: A prototype for other language. Int. J. Medical Informatics 75(7): 542-552 (2006) - [j10]Anita Burgun:
Desiderata for domain reference ontologies in biomedicine. J. Biomed. Informatics 39(3): 307-313 (2006) - [j9]Emilie Guérin, Gwenaëlle Marquet, Julie Chabalier, Marie-Bérengère Troadec, Christiane Guguen-Guillouzo, Olivier Loréal, Anita Burgun, Fouzia Moussouni:
Combining biomedical knowledge and transcriptomic data to extract new knowledge on genes. J. Integr. Bioinform. 3(2) (2006) - [c39]Fleur Mougin, Anita Burgun, Olivier Bodenreider:
Using WordNet to Improve the Mapping of Data Elements to UMLS for Data Sources Integration. AMIA 2006 - [c38]Nicolas Garcelon, Fleur Mougin, Cédric Bousquet, Anita Burgun:
Evidence in pharmacovigilance: extracting Adverse Drug Reactions articles from MEDLINE to link them to case databases. MIE 2006: 528-533 - [c37]Gwenaëlle Marquet, Jean Mosser, Anita Burgun:
Aligning biomedical ontologies using lexical methods and the UMLS: the case of Disease ontologies. MIE 2006: 781-786 - [c36]Fleur Mougin, Anita Burgun, Olivier Bodenreider:
Data Integration through data elements: Mapping data elements to terminological resources. SMBM 2006 - 2005
- [j8]Pierre Zweigenbaum, Robert H. Baud, Anita Burgun, Fiammetta Namer, Éric Jarrousse, Natalia Grabar, Patrick Ruch, Franck Le Duff, Jean-François Forget, Magaly Douyère, Stéfan Jacques Darmoni:
UMLF: a unified medical lexicon for French. Int. J. Medical Informatics 74(2-4): 119-124 (2005) - [j7]Delphine Rossille, Jean-François Laurent, Anita Burgun:
Modelling a decision-support system for oncology using rule-based and case-based reasoning methodologies. Int. J. Medical Informatics 74(2-4): 299-306 (2005) - [c35]