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José Luís Oliveira

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affiliation: University of Aveiro, Portugal

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2020 – today

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2024
[j71]
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Nelson R. C. Monteiro, José Luís Oliveira, Joel P. Arrais:
TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers. Expert Syst. Appl. 238(Part F): 122334 (2024)
[j70]
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Rodrigo Escobar Díaz Guerrero, José Luís Oliveira, Jürgen Popp, Thomas Bocklitz:
MMIR: an open-source software for the registration of multimodal histological images. BMC Medical Informatics Decis. Mak. 24(1): 65 (2024)
[c177]
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João Rafael Almeida, Jorge Miguel Silva, Luís Carlos Afonso, Tiago Melo Almeida, Rui Antunes, Richard A. A. Jonker, João António Reis, Dimitri Alexandre da Silva, Sérgio Matos, José Luís Oliveira:
HealthDBFinder: a question-answering task for health database discovery. CBMS 2024: 100-105
[c176]
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João Rafael Almeida, Peter R. Rijnbeek, Maxim Moinat, José Luís Oliveira:
Assessing the feasibility of observational data sources for multicenter clinical studies. CBMS 2024: 406-411
[c175]
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Jorge Miguel Silva, José Luís Oliveira:
BIT.UA at iDPP: Predictive Analytics on ALS Disease Progression Using Sensor Data with Machine Learning. CLEF (Working Notes) 2024: 1401-1411
2023
[j69]
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Dinis Barroqueiro Cruz, João Rafael Almeida, José Luís Oliveira:
Open Source Solutions for Vulnerability Assessment: A Comparative Analysis. IEEE Access 11: 100234-100255 (2023)
[j68]
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  - journals/cbm/FajardaADSO23
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Olga Fajarda, João Rafael Almeida, Sara Duarte-Pereira, Raquel M. Silva, José Luís Oliveira:
Methodology to identify a gene expression signature by merging microarray datasets. Comput. Biol. Medicine 159: 106867 (2023)
[j67]
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  - journals/cbm/MonteiroPMOAA23
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Nelson R. C. Monteiro, Tiago Pereira, Ana Catarina D. Machado, José Luís Oliveira, Maryam Abbasi, Joel P. Arrais:
FSM-DDTR: End-to-end feedback strategy for multi-objective De Novo drug design using transformers. Comput. Biol. Medicine 164: 107285 (2023)
[j66]
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Arnaldo Pereira, João Rafael Almeida, Rui Pedro Lopes, José Luís Oliveira:
Querying semantic catalogues of biomedical databases. J. Biomed. Informatics 137: 104272 (2023)
[j65]
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Sara Duarte-Pereira, Sérgio Matos, José Luís Oliveira, Raquel M. Silva:
Study of NAD-interacting proteins highlights the extent of NAD regulatory roles in the cell and its potential as a therapeutic target. J. Integr. Bioinform. 20(2) (2023)
[c174]
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Rodrigo Escobar Díaz Guerrero, Yubraj Gupta, Thomas Bocklitz, José Luís Oliveira:
A Multimodal Image Registration System for Histology Images. CBMS 2023: 17-22
[c173]
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Diniz Cruz, João Rafael Almeida, Jorge Miguel Silva, José Luís Oliveira:
SecureFASTA: Ensuring privacy and trust when sharing genomic data. CBMS 2023: 173-178
[c172]
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João Rafael Almeida, Jorge Miguel Silva, José Luís Oliveira:
A FAIR Approach to Real-World Health Data Management and Analysis. CBMS 2023: 892-897
[c171]
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João Rafael Almeida, Alejandro Pazos, José Luís Oliveira:
Clinical Data Integration Strategies for Multicenter Studies. DoCEIS 2023: 175-190
[c170]
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Richard Adolph Aires Jonker, Roshan Poudel, Olga Fajarda, José Luís Oliveira, Rui Pedro Lopes, Sérgio Matos:
DyPrune: Dynamic Pruning Rates for Neural Networks. EPIA (1) 2023: 146-157
[c169]
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Miguel Pinheiro, Jorge Miguel Silva, José Luís Oliveira:
Optimizing Variant Calling for Human Genome Analysis: A Comprehensive Pipeline Approach. IWBBIO (2) 2023: 72-85
[c168]
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João Rafael Almeida, José Luís Oliveira:
A 20-Year Journey of Tracing the Development of Web Catalogues for Rare Diseases. IWBBIO (2) 2023: 165-179
[c167]
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Dinis Barroqueiro Cruz, João Rafael Almeida, Jorge M. Silva, José Luís Oliveira:
A Reliable and Secure Method for Sharing Genomic Data. MIE 2023: 1071-1072
2022
[j64]
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  - journals/bmcbi/MonteiroSAAOA22
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Nelson R. C. Monteiro, Carlos J. V. Simões, Henrique V. Ávila, Maryam Abbasi, José Luís Oliveira, Joel P. Arrais:
Explainable deep drug-target representations for binding affinity prediction. BMC Bioinform. 23(1): 237 (2022)
[j63]
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Nelson R. C. Monteiro, José Luís Oliveira, Joel P. Arrais:
DTITR: End-to-end drug-target binding affinity prediction with transformers. Comput. Biol. Medicine 147: 105772 (2022)
[j62]
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  - journals/iet-sen/PereiraTLO22
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Arnaldo Pereira, Alina Trifan, Rui Pedro Lopes, José Luís Oliveira:
Systematic review of question answering over knowledge bases. IET Softw. 16(1): 1-13 (2022)
[j61]
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  - journals/jcheminf/AbbasiSPSMSBROA22
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Maryam Abbasi, Beatriz P. Santos, Tiago C. Pereira, Raul Sofia, Nelson R. C. Monteiro, Carlos J. V. Simões, Rui M. M. Brito, Bernardete Ribeiro, José Luís Oliveira, Joel P. Arrais:
Designing optimized drug candidates with Generative Adversarial Network. J. Cheminformatics 14(1): 40 (2022)
[j60]
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Maryam Abbasi, Beatriz P. Santos, Tiago C. Pereira, Raul Sofa, Nelson R. C. Monteiro, Carlos J. V. Simões, Rui M. M. Brito, Bernardete Ribeiro, José Luís Oliveira, Joel P. Arrais:
Correction to: Designing optimized drug candidates with Generative Adversarial Network. J. Cheminformatics 14(1): 53 (2022)
[c166]
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  - conf/adbis/YanchukTFO22
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Alina Yanchuk, Alina Trifan, Olga Fajarda, José Luís Oliveira:
Automatic Classification of Stigmatizing Articles of Mental Illness: The Case of Portuguese Online Newspapers. ADBIS (Short Papers) 2022: 332-343
[c165]
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Richard Adolph Aires Jonker, Roshan Poudel, Olga Fajarda, Sérgio Matos, José Luís Oliveira, Rui Pedro Lopes:
Portuguese Twitter Dataset on COVID-19. ASONAM 2022: 332-338
[c164]
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  - conf/cbms/AlmeidaSPO22
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João Rafael Almeida, Luís Bastião Silva, Alejandro Pazos, José Luís Oliveira:
Combining heterogeneous patient-level data into tranSMART to support multicentre studies. CBMS 2022: 62-65
[c163]
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Arnaldo Pereira, João Rafael Almeida, Rui Pedro Lopes, José Luís Oliveira:
Visualising Time-evolving Semantic Biomedical Data. CBMS 2022: 264-269
[c162]
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João Rafael Almeida, João Paulo Barraca, José Luís Oliveira:
A secure architecture for exploring patient-level databases from distributed institutions. CBMS 2022: 447-452
[c161]
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  - conf/centeris/SilvaAO22
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Jorge Miguel Silva, João Rafael Almeida, José Luís Oliveira:
Classifying and discovering genomic sequences in metagenomic repositories. CENTERIS/ProjMAN/HCist 2022: 1501-1508
[c160]
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Rodrigo Ferreira, Alina Trifan, José Luís Oliveira:
Early risk detection of mental illnesses using various types of textual features. CLEF (Working Notes) 2022: 905-920
[c159]
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  - conf/coling/MoraisOTF22
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Edgar Morais, José Luís Oliveira, Alina Trifan, Olga Fajarda:
BioInfo@UAVR@SMM4H'22: Classification and Extraction of Adverse Event mentions in Tweets using Transformer Models. SMM4H@COLING 2022: 65-67
[c158]
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João Rafael Almeida, João Paulo Barraca, José Luís Oliveira:
Preserving Privacy when Querying OMOP CDM Databases. EFMI-STC 2022: 163-164
[c157]
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Arnaldo Pereira, João Rafael Almeida, Rui Pedro Lopes, Alejandro Pazos, José Luís Oliveira:
Discovery of Biomedical Databases Through Semantic Questioning. MIE 2022: 585-586
[c156]
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  - conf/pacbb/Duarte-PereiraM22
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Sara Duarte-Pereira, Sérgio Matos, José Luís Oliveira, Raquel M. Silva:
The NAD Interactome, Identification of Putative New NAD-Binding Proteins. PACBB 2022: 43-54
2021
[j59]
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  - journals/bioinformatics/PereiraAORA21
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Tiago Pereira, Maryam Abbasi, José Luís Oliveira, Bernardete Ribeiro, Joel Arrais:
Optimizing blood-brain barrier permeation through deep reinforcement learning for de novo drug design. Bioinform. 37(Supplement): 84-92 (2021)
[j58]
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João Rafael Almeida, Diogo Pratas, José Luís Oliveira:
A semi-automatic methodology for analysing distributed and private biobanks. Comput. Biol. Medicine 130: 104180 (2021)
[j57]
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João Rafael Almeida, João Figueira Silva, Sérgio Matos, José Luís Oliveira:
A two-stage workflow to extract and harmonize drug mentions from clinical notes into observational databases. J. Biomed. Informatics 120: 103849 (2021)
[j56]
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  - journals/jib/TrifanO21
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Alina Trifan, José Luís Oliveira:
Cross-evaluation of social mining for classification of depressed online personas. J. Integr. Bioinform. 18(2): 101-110 (2021)
[j55]
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João Rafael Almeida, Leonardo Coelho, José Luís Oliveira:
BIcenter: A collaborative Web ETL solution based on a reflective software approach. SoftwareX 16: 100892 (2021)
[c155]
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Alina Trifan, Sérgio Matos, Pedro Morgado, José Luís Oliveira:
Bilingual Emotion Analysis on Social Media throughout the COVID19 Pandemic in Portugal. HEALTHINF 2021: 430-434
[c154]
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Rodrigo Escobar Díaz Guerrero, José Luís Oliveira:
Improvements in lymphocytes detection using deep learning with a preprocessing stage. CBMS 2021: 178-182
[c153]
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Mariana Sequeira, João Rafael Almeida, José Luís Oliveira:
A Comparative Analysis of Data Platforms for Rare Diseases. CBMS 2021: 366-371
[c152]
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Arnaldo Pereira, Rui Pedro Lopes, José Luís Oliveira:
Easing the Questioning of Semantic Biomedical Data. CBMS 2021: 384-388
[c151]
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João Rafael Almeida, Eriksson J. Melicio Monteiro, José Luís Oliveira:
An Architecture to Define Cohorts over Medical Imaging Datasets. CBMS 2021: 545-549
[c150]
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Lucas Barros, Alina Trifan, José Luís Oliveira:
VADER meets BERT: sentiment analysis for early detection of signs of self-harm through social mining. CLEF (Working Notes) 2021: 897-907
[c149]
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João Rafael Almeida, João Figueira Silva, Sérgio Matos, Alejandro Pazos, José Luís Oliveira:
A Recommender System to Help Refining Clinical Research Studies. MIE 2021: 327-331
[e2]
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João Rafael Almeida, Alejandro Rodríguez González, Linlin Shen, Bridget Kane, Agma J. M. Traina, Paolo Soda, José Luís Oliveira:
34th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2021, Aveiro, Portugal, June 7-9, 2021. IEEE 2021, ISBN 978-1-6654-4121-6 [contents]
2020
[j54]
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Olga Fajarda, Sara Duarte-Pereira, Raquel M. Silva, José Luís Oliveira:
Merging microarray studies to identify a common gene expression signature to several structural heart diseases. BioData Min. 13(1): 8 (2020)
[j53]
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João Rafael Almeida, Armando J. Pinho, José Luís Oliveira, Olga Fajarda, Diogo Pratas:
GTO: A toolkit to unify pipelines in genomic and proteomic research. SoftwareX 12: 100535 (2020)
[c148]
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  - conf/bibe/TorresMOAR20
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Luis H. M. Torres, Nelson R. C. Monteiro, José Luís Oliveira, Joel Arrais, Bernardete Ribeiro:
Exploring a Siamese Neural Network Architecture for One-Shot Drug Discovery. BIBE 2020: 168-175
[c147]
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João Rafael Almeida, João Figueira Silva, Alejandro Pazos Sierra, Sérgio Matos, José Luís Oliveira:
Enhancing Decision-making Systems with Relevant Patient Information by Leveraging Clinical Notes. HEALTHINF 2020: 254-262
[c146]
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João Rafael Almeida, João Figueira Silva, Alejandro Pazos Sierra, Sérgio Matos, José Luís Oliveira:
Leveraging Clinical Notes for Enhancing Decision-Making Systems with Relevant Patient Information. BIOSTEC (Selected Papers) 2020: 521-540
[c145]
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João Rafael Almeida, Pedro Freire, Olga Fajarda, José Luís Oliveira:
A Computational Platform for Heart Failure Cases Research. HEALTHINF 2020: 601-608
[c144]
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João Rafael Almeida, Eriksson J. Melicio Monteiro, Luís A. Bastião Silva, Alejandro Pazos Sierra, José Luís Oliveira:
A Recommender System to Help Discovering Cohorts in Rare Diseases. CBMS 2020: 25-28
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João Rafael Almeida, José Luís Oliveira:
Multi-language Concept Normalisation of Clinical Cohorts. CBMS 2020: 261-264
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João Rafael Almeida, Olga Fajarda, José Luís Oliveira:
File Forgery Detection Using a Weighted Rule-Based System. CLEF 2020: 85-96
[c141]
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Ricardo F. Ribeiro, Júlio Silva, Alina Trifan, José Luís Oliveira, António J. R. Neves:
UA.PT Bioinformatics at ImageCLEF 2020: Lifelog Moment Retrieval Web based Tool. CLEF (Working Notes) 2020
[c140]
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Alina Trifan, Pedro Salgado, José Luís Oliveira:
BioInfo@UAVR at eRisk 2020: on the Use of Psycholinguistics Features and Machine Learning for the Classification and Quantification of Mental Diseases. CLEF (Working Notes) 2020
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Alina Trifan, Rui Antunes, Sérgio Matos, José Luís Oliveira:
Understanding Depression from Psycholinguistic Patterns in Social Media Texts. ECIR (2) 2020: 402-409
[c138]
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João Rafael Almeida, Eriksson J. Melicio Monteiro, Luís A. Bastião Silva, Alejandro Pazos, José Luís Oliveira:
A Recommender System Based on Cohorts' Similarity. MIE 2020: 1183-1184
[c137]
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Alina Trifan, Dave Semeraro, Justin A. Drake, Radek Bukowski, José Luís Oliveira:
Social Media Mining for Postpartum Depression Prediction. MIE 2020: 1391-1392
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Alina Trifan, Rui Antunes, José Luís Oliveira:
Machine Learning for Depression Screening in Online Communities. PACBB 2020: 102-111

2010 – 2019

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2019
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José Luís Oliveira, Alina Trifan, Luís A. Bastião Silva:
EMIF Catalogue: A collaborative platform for sharing and reusing biomedical data. Int. J. Medical Informatics 126: 35-45 (2019)
[j51]
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Alina Trifan, José Luís Oliveira:
Patient data discovery platforms as enablers of biomedical and translational research: A systematic review. J. Biomed. Informatics 93 (2019)
[j50]
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João Rafael Almeida, Rosa Gini, Giuseppe Roberto, Peter R. Rijnbeek, José Luís Oliveira:
TASKA: A modular task management system to support health research studies. BMC Medical Informatics Decis. Mak. 19(1): 121:1-121:9 (2019)
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Alina Trifan, José Luís Oliveira:
FAIRness in Biomedical Data Discovery. HEALTHINF 2019: 159-166
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Alina Trifan, José Luís Oliveira:
Towards a More Reproducible Biomedical Research Environment: Endorsement and Adoption of the FAIR Principles. BIOSTEC (Selected Papers) 2019: 453-470
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João Rafael Almeida, Olga Fajarda, Arnaldo Pereira, José Luís Oliveira:
Strategies to Access Patient Clinical Data from Distributed Databases. HEALTHINF 2019: 466-473
[c132]
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João Rafael Duarte de Almeida, José Luís Oliveira:
GenericCDSS - A Generic Clinical Decision Support System. CBMS 2019: 186-191
[c131]
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João Rafael Almeida, Pedro Freire, Olga Fajarda, José Luís Oliveira:
A Weighted Rule-Based Model for File Forgery Detection: UA.PT Bioinformatics at ImageCLEF 2019. CLEF (Working Notes) 2019
[c130]
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Ricardo F. Ribeiro, António J. R. Neves, José Luís Oliveira:
UA.PT Bioinformatics at ImageCLEF 2019: Lifelog Moment Retrieval based on Image Annotation and Natural Language Processing. CLEF (Working Notes) 2019
[c129]
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Alina Trifan, José Luís Oliveira:
BioInfo@UAVR at eRisk 2019: delving into Social Media Texts for the Early Detection of Mental and Food Disorders. CLEF (Working Notes) 2019
[c128]
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Ricardo F. Ribeiro, António J. R. Neves, José Luís Oliveira:
Image selection based on low level properties for lifelog moment retrieval. ICMV 2019: 1143303
2018
[j49]
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Luís A. Bastião Silva, Alina Trifan, José Luís Oliveira:
MONTRA: An agile architecture for data publishing and discovery. Comput. Methods Programs Biomed. 160: 33-42 (2018)
[j48]
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Pedro Sernadela, José Luís Oliveira:
COEUS 2.0: automated platform to integrate and publish biomedical data as nanopublications. IET Softw. 12(2): 136-141 (2018)
[c127]
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Olga Fajarda, Luís A. Bastião Silva, Peter R. Rijnbeek, Michel Van Speybroeck, José Luís Oliveira:
A Methodology to Perform Semi-automatic Distributed EHR Database Queries. HEALTHINF 2018: 127-134
[c126]
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Olga Fajarda, Alina Trifan, Michel Van Speybroeck, Peter R. Rijnbeek, José Luís Oliveira:
Exploring the Value of Electronic Health Records from Multiple Datasets. BIOSTEC (Selected Papers) 2018: 367-383
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David Campos, Renato P. Pinho, Ute Neugebauer, Jürgen Popp, José Luís Oliveira:
A Computational Pipeline for Sepsis Patients' Stratification and Diagnosis. HEALTHINF 2018: 408-413
[c124]
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João Rafael Almeida, Ricardo F. Ribeiro, José Luís Oliveira:
A Modular Workflow Management Framework. HEALTHINF 2018: 414-421
[c123]
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João Rafael Almeida, Tiago Marques Godinho, Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
Services Orchestration and Workflow Management in Distributed Medical Imaging Environments. CBMS 2018: 170-175
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João Rafael Almeida, Joana Guimaraes, José Luís Oliveira:
Simplifying the Digitization of Clinical Protocols for Diabetes Management. CBMS 2018: 176-181
[c121]
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Alina Trifan, José Luís Oliveira:
A FAIR Marketplace for Biomedical Data Custodians and Clinical Researchers. CBMS 2018: 188-193
[c120]
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Maryse Oliveira, José Luís Oliveira:
Smartphone as data collector in health monitoring. DATA 2018: 21:1-21:4
[c119]
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Vitor Pereira, Sérgio Matos, José Luís Oliveira:
Automated ICD-9-CM medical coding of diabetic patient's clinical reports. DATA 2018: 23:1-23:6
[c118]
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Andre Malta, José Luís Oliveira:
Simplifying biomedical data sharing through a web portal generator. HealthCom 2018: 1-6
[c117]
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Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Fighting Fire with Fire: Computational Prediction of Microbial Targets for Bacteriocins. IWBBIO (1) 2018: 221-234
[c116]
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Fábio Maia, Luís A. Bastião Silva, José Luís Oliveira:
Biomedical Informatics - How to Choose the Best Tool for Each Task. MIE 2018: 406-410
[c115]
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Alina Trifan, Johan van der Lei, Carlos Díaz, José Luís Oliveira:
A Methodology for Fine-Grained Access Control in Exposing Biomedical Data. MIE 2018: 561-565
2017
[j47]
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Pedro Sernadela, José Luís Oliveira:
A semantic-based workflow for biomedical literature annotation. Database J. Biol. Databases Curation 2017: bax088 (2017)
[j46]
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Tiago Marques Godinho, Carlos Costa, José Luís Oliveira:
Intelligent generator of big data medical imaging repositories. IET Softw. 11(3): 100-104 (2017)
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Pedro Sernadela, Lorena González-Castro, José Luís Oliveira:
SCALEUS: Semantic Web Services Integration for Biomedical Applications. J. Medical Syst. 41(4): 54:1-54:11 (2017)
[j44]
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Eriksson J. Melicio Monteiro, Carlos Costa, José Luís Oliveira:
A De-Identification Pipeline for Ultrasound Medical Images in DICOM Format. J. Medical Syst. 41(5): 89:1-89:16 (2017)
[i1]
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Luís Bastião Silva, Rafael C. Jiménez, Niklas Blomberg, José Luís Oliveira:
General guidelines for biomedical software development. F1000Research 6: 273- (2017)
2016
[j43]
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  - journals/biodb/KimDCCORBCAMSCO16
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Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau:
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016)
[j42]
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Sérgio Matos, David Campos, Renato P. Pinho, Raquel M. Silva, Matthew E. Mort, David N. Cooper, José Luís Oliveira:
Mining clinical attributes of genomic variants through assisted literature curation in Egas. Database J. Biol. Databases Curation 2016 (2016)
[j41]
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Paulo Gaspar, José Luís Oliveira, Jörg Frommlet, Manuel A. S. Santos, Gabriela R. Moura:
Corrigendum: EuGene: maximizing synthetic gene design for heterologous expression. Bioinform. 32(7): 1120 (2016)
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John Edison Arevalo Ovalle, Fabio A. González, Raúl Ramos-Pollán, José Luís Oliveira, Miguel Ángel Guevara-López:
Representation learning for mammography mass lesion classification with convolutional neural networks. Comput. Methods Programs Biomed. 127: 248-257 (2016)
[j39]
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Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction. PLoS Comput. Biol. 12(11) (2016)
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Fernanda Brito Correia, Joel P. Arrais, José Luís Oliveira:
Prediction of Cancer using Network Topological Features. BIOINFORMATICS 2016: 207-215
[c113]
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Eriksson J. Melicio Monteiro, Pedro Sernadela, Sérgio Matos, Carlos Costa, José Luís Oliveira:
Semantic Knowledge Base Construction from Radiology Reports. HEALTHINF 2016: 345-352
[c112]
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Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Ensemble-Based Methodology for the Prediction of Drug-Target Interactions. CBMS 2016: 36-41
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Eriksson J. Melicio Monteiro, Carlos Costa, José Luís Oliveira, David Campos, Luís A. Bastião Silva:
Caching and Prefetching Images in a Web-Based DICOM Viewer. CBMS 2016: 241-246
[c110]
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André Santos, Sérgio Matos, David Campos, José Luís Oliveira:
A Curation Pipeline and Web-Services for PDF Documents. SMBM 2016: 75-79
2015
[j38]
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Pedro Lopes, José Luís Oliveira:
An automated real-time integration and interoperability framework for bioinformatics. BMC Bioinform. 16: 328:1-328:13 (2015)
[j37]
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Jorge A. Vanegas, Sérgio Matos, Fabio A. González, José Luís Oliveira:
An Overview of Biomolecular Event Extraction from Scientific Documents. Comput. Math. Methods Medicine 2015: 571381:1-571381:19 (2015)
[j36]
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Edgar D. Coelho, André M. Santiago, Joel P. Arrais, José Luís Oliveira:
Computational methodology for predicting the landscape of the human-microbial interactome region level influence. J. Bioinform. Comput. Biol. 13(5): 1550023:1-1550023:18 (2015)
[j35]
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David Campos, Sérgio Matos, José Luís Oliveira:
A document processing pipeline for annotating chemical entities in scientific documents. J. Cheminformatics 7(S-1): S7 (2015)
[j34]
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Luís A. Bastião Silva, Luís S. Ribeiro, Milton Santos, Nuno Neves, Dulce Francisco, Carlos Costa, José Luís Oliveira:
Normalizing Heterogeneous Medical Imaging Data to Measure the Impact of Radiation Dose. J. Digit. Imaging 28(6): 671-683 (2015)
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John Edison Arevalo Ovalle, Fabio A. González, Raúl Ramos-Pollán, José Luís Oliveira, Miguel Ángel Guevara-López:
Convolutional neural networks for mammography mass lesion classification. EMBC 2015: 797-800
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Eriksson J. Melicio Monteiro, Carlos Costa, José Luís Oliveira:
A machine learning methodology for medical imaging anonymization. EMBC 2015: 1381-1384
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Edgar D. Coelho, Joel P. Arrais, José Luís Oliveira:
Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions. EMBC 2015: 3254-3257
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Pedro Sernadela, Sérgio Matos, José Luís Oliveira:
Ann2RDF: moving annotations to semantic web. iiWAS 2015: 52:1-52:5
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Pedro Sernadela, Pedro Lopes, David Campos, Sérgio Matos, José Luís Oliveira:
A Semantic Layer for Unifying and Exploring Biomedical Document Curation Results. IWBBIO (1) 2015: 8-17
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Pedro Lopes, José Luís Oliveira:
An Event-Driven Architecture for Biomedical Data Integration and Interoperability. IWBBIO (2) 2015: 165-174
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Susana Brás, Augusto Silva, José Ribeiro, José Luís Oliveira:
New Insights in Echocardiography Based Left-Ventricle Dynamics Assessment. IWBBIO (1) 2015: 292-302
[c102]
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Luís A. Bastião Silva, Carlos Días, Johan van der Lei, José Luís Oliveira:
Architecture to Summarize Patient-Level Data Across Borders and Countries. MedInfo 2015: 687-690
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Eriksson J. Melicio Monteiro, Frederico Valente, Carlos Costa, José Luís Oliveira:
A Recommender System for Medical Imaging Diagnostic. MIE 2015: 461-463
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Sérgio Matos, José Sequeira, José Luís Oliveira:
BioinformaticsUA: Machine Learning and Rule-Based Recognition of Disorders and Clinical Attributes from Patient Notes. SemEval@NAACL-HLT 2015: 422-426
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Pedro Lopes, Luís Bastião, José Luís Oliveira:
i2x: An Automated Real-Time Integration and Interoperability Platform (Short Paper). SOCA 2015: 26-30
2014
[j33]
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David Campos, Jóni Lourenço, Sérgio Matos, José Luís Oliveira:
Egas: a collaborative and interactive document curation platform. Database J. Biol. Databases Curation 2014 (2014)
[j32]
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Miguel Reboiro-Jato, Joel Arrais, José Luís Oliveira, Florentino Fdez-Riverola:
geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification. BMC Bioinform. 15: 31 (2014)
[j31]
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Edgar D. Coelho, Joel Arrais, Sérgio Matos, Carlos Pereira, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Computational prediction of the human-microbial oral interactome. BMC Syst. Biol. 8: 24 (2014)
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Luís A. Bastião Silva, Renato P. Pinho, Luís S. Ribeiro, Carlos Costa, José Luís Oliveira:
A Centralized Platform for Geo-Distributed PACS Management. J. Digit. Imaging 27(2): 165-173 (2014)
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Luís A. Bastião Silva, Samuel Campos, Carlos Costa, José Luís Oliveira:
Sensor-Based Architecture for Medical Imaging Workflow Analysis. J. Medical Syst. 38(8): 63 (2014)
[j28]
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David Campos, Quoc-Chinh Bui, Sérgio Matos, José Luís Oliveira:
TrigNER: automatically optimized biomedical event trigger recognition on scientific documents. Source Code Biol. Medicine 9: 1 (2014)
[j27]
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Luís S. Ribeiro, Carlos Viana-Ferreira, José Luís Oliveira, Carlos Costa:
XDS-I Outsourcing Proxy: Ensuring Confidentiality While Preserving Interoperability. IEEE J. Biomed. Health Informatics 18(4): 1404-1412 (2014)
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Luís A. Bastião Silva, Louis Beroud, Carlos Costa, José Luís Oliveira:
Medical imaging archiving: A comparison between several NoSQL solutions. BHI 2014: 65-68
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Tiago Nunes, Sérgio Matos, José Luís Oliveira:
Extracting Sentences Describing Biomolecular Events from the Biomedical Literature. DCAI 2014: 417-424
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Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
Semantic Search over DICOM Repositories. ICHI 2014: 238-246
[c95]
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Luís António Bastião Silva, Luís S. Ribeiro, Carlos Costa, José Luís Oliveira, Milton Santos:
Normalizing medical imaging archives for dose quality assurance and productivity auditing. MeMeA 2014: 491-496
[c94]
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Tiago Marques Godinho, Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
Multi-provider Architecture for Cloud Outsourcing of Medical Imaging Repositories. MIE 2014: 146-150
[c93]
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Luís A. Bastião Silva, Luís S. Ribeiro, Milton Santos, Carlos Costa, José Luís Oliveira:
Screening Radiation Exposure for Quality Assurance. MIE 2014: 622-626
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Luísa Castro, José Luís Oliveira, Raquel M. Silva:
Mutation Analysis in PARK2 Gene Uncovers Patterns of Associated Genetic Variants. PACBB 2014: 145-152
[c91]
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Pedro Sernadela, Eelke van der Horst, Mark Thompson, Pedro Lopes, Marco Roos, José Luís Oliveira:
A Nanopublishing Architecture for Biomedical Data. PACBB 2014: 277-284
[c90]
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Sérgio Matos, Tiago Nunes, José Luís Oliveira:
BioinformaticsUA: Concept Recognition in Clinical Narratives Using a Modular and Highly Efficient Text Processing Framework. SemEval@COLING 2014: 135-139
2013
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Tiago Nunes, David Campos, Sérgio Matos, José Luís Oliveira:
BeCAS: biomedical concept recognition services and visualization. Bioinform. 29(15): 1915-1916 (2013)
[j25]
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David Campos, Sérgio Matos, José Luís Oliveira:
Gimli: open source and high-performance biomedical name recognition. BMC Bioinform. 14: 54 (2013)
[j24]
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David Campos, Sérgio Matos, José Luís Oliveira:
A modular framework for biomedical concept recognition. BMC Bioinform. 14: 281 (2013)
[j23]
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Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
DICOM relay over the cloud. Int. J. Comput. Assist. Radiol. Surg. 8(3): 323-333 (2013)
[j22]
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Pedro Lopes, José Luís Oliveira:
An innovative portal for rare genetic diseases research: The semantic Diseasecard. J. Biomed. Informatics 46(6): 1108-1115 (2013)
[j21]
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Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
A common API for delivering services over multi-vendor cloud resources. J. Syst. Softw. 86(9): 2309-2317 (2013)
[c89]
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Carlos Viana-Ferreira, Carlos Costa, José Luís Oliveira:
A multi-domain platform for medical imaging. CBMS 2013: 89-94
[c88]
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Luís A. Bastião Silva, Samuel Campos, Carlos Costa, José Luís Oliveira:
Integrating echocardiogram reports with medical imaging. CBMS 2013: 373-376
[c87]
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Sérgio Matos, Hugo Araújo, José Luís Oliveira:
Structuring and Exploring the Biomedical Literature Using Latent Semantics. DCAI 2013: 609-616
[c86]
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Eriksson J. Melicio Monteiro, Carlos Costa, José Luís Oliveira:
A DICOM viewer based on web technology. Healthcom 2013: 167-171
[c85]
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Luís S. Ribeiro, Frederico Honorio, José Luís Oliveira, Carlos Costa:
Leveraging XDS-I and PIX workflows for validating cross-enterprise patient identity linkage. Healthcom 2013: 286-288
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Pedro Sernadela, Pedro Lopes, José Luís Oliveira:
Exploring nanopublications integration in pharmacovigilance scenarios. Healthcom 2013: 728-730
[c83]
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Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
An Agile Framework to Support Distributed Medical Imaging Scenarios. ICHI 2013: 345-350
[c82]
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Edgar D. Coelho, Joel Arrais, Sérgio Matos, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Computational Approach to Predict Inter-Species Oral Protein-Protein Interactions. IWBBIO 2013: 193-194
[c81]
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Andre Vechina, Joel Arrais, José Luís Oliveira:
Representation of Semantic Networks of Biomedical Terms. IWBBIO 2013: 703-710
[c80]
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Luís S. Ribeiro, Renato P. Rodrigues, Carlos Costa, José Luís Oliveira:
Enabling Outsourcing XDS for Imaging on the Public Cloud. MedInfo 2013: 33-37
[c79]
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Fernanda Correia Barbosa, Joel P. Arrais, José Luís Oliveira:
Quantitative Characterization of Protein Networks of the Oral Cavity. PACBB 2013: 61-68
[c78]
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Víctor M. Prieto, Sérgio Matos, Manuel Álvarez, Fidel Cacheda, José Luís Oliveira:
Analysing Relevant Diseases from Iberian Tweets. PACBB 2013: 69-76
[c77]
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Pedro Lopes, José Luís Oliveira:
Semantic Rule Processing for Real-time Data Integration. SWAT4LS 2013
[c76]
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Rui Pedro Lopes, Pedro Sernadela, José Luís Oliveira:
Exploring Nanopublishing with COEUS. SWAT4LS 2013
2012
[j20]
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David Campos, Sérgio Matos, Ian Lewin, José Luís Oliveira, Dietrich Rebholz-Schuhmann:
Harmonization of gene/protein annotations: towards a gold standard MEDLINE. Bioinform. 28(9): 1253-1261 (2012)
[j19]
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Paulo Gaspar, José Luís Oliveira, Jörg Frommlet, Manuel A. S. Santos, Gabriela R. Moura:
EuGene: maximizing synthetic gene design for heterologous expression. Bioinform. 28(20): 2683-2684 (2012)
[j18]
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Pedro Lopes, José Luís Oliveira:
COEUS: "semantic web in a box" for biomedical applications. J. Biomed. Semant. 3: 11 (2012)
[j17]
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Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
A PACS archive architecture supported on cloud services. Int. J. Comput. Assist. Radiol. Surg. 7(3): 349-358 (2012)
[j16]
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Luís S. Ribeiro, Carlos Costa, José Luís Oliveira:
Clustering of distinct PACS archives using a cooperative peer-to-peer network. Comput. Methods Programs Biomed. 108(3): 1002-1011 (2012)
[j15]
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José Paulo Lousado, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos:
An integrative approach for codon repeats evolutionary analyses. Int. J. Data Min. Bioinform. 6(4): 369-381 (2012)
[j14]
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Carlos Costa, José Luís Oliveira:
Telecardiology through ubiquitous Internet services. Int. J. Medical Informatics 81(9): 612-621 (2012)
[j13]
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Pedro Gonçalves, José Luís Oliveira, Rui L. Aguiar:
A study of encoding overhead in network management protocols. Int. J. Netw. Manag. 22(6): 435-450 (2012)
[j12]
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Paulo Gaspar, Jaime G. Carbonell, José Luís Oliveira:
On the parameter optimization of Support Vector Machines for binary classification. J. Integr. Bioinform. 9(3) (2012)
[j11]
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Anna Bauer-Mehren, Erik M. van Mulligen, Paul Avillach, María del Carmen Carrascosa, Ricard García-Serna, Janet Piñero González, Bharat Singh, Pedro Lopes, José Luís Oliveira, Gayo Diallo, Ernst Ahlberg Helgee, Scott Boyer, Jordi Mestres, Ferran Sanz, Jan A. Kors, Laura Inés Furlong:
Automatic Filtering and Substantiation of Drug Safety Signals. PLoS Comput. Biol. 8(4) (2012)
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Frederico Valente, Carlos Viana-Ferreira, Carlos Costa, José Luís Oliveira:
A RESTful Image Gateway for Multiple Medical Image Repositories. IEEE Trans. Inf. Technol. Biomed. 16(3): 356-364 (2012)
[c75]
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José Melo, Joel Arrais, Pedro Lopes, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Web Information System for the Study of Oral Health. HEALTHINF 2012: 97-105
[c74]
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Tiago Pedrosa, Rui Pedro Lopes, João C. Santos, Carlos Costa, José Luís Oliveira:
A Secure Personal Health Record Repository. HEALTHINF 2012: 243-248
[c73]
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  - conf/biostec/VeltePCO12
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Linda Velte, Tiago Pedrosa, Carlos Costa, José Luís Oliveira:
An openEHR Repository based on a Native XML Database. HEALTHINF 2012: 386-389
[c72]
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José Melo, Joel P. Arrais, Edgar D. Coelho, Pedro Lopes, Nuno Rosa, Maria José Correia, Marlene Barros, José Luís Oliveira:
Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology. BIOSTEC (Selected Papers) 2012: 401-412
[c71]
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Luís A. Bastião Silva, Carlos Costa, José Luís Oliveira:
A DICOM Relay Service Supported on Cloud Resources. HEALTHINF 2012: 409-412
[c70]
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Rafael Mendonça, Pedro Lopes, Hugo Rocha, Jorge Oliveira, Laura Vilarinho, Rosário Santos, José Luís Oliveira:
Gathering and Managing Genotype and Phenotype Information about Rare Diseases Patients. HEALTHINF 2012: 423-426
[c69]
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Carlos Viana-Ferreira, Carlos Costa, José Luís Oliveira:
Dicoogle relay - a cloud communications bridge for medical imaging. CBMS 2012: 1-6
[c68]
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Paulo Gaspar, Jaime G. Carbonell, José Luís Oliveira:
Parameter Influence in Genetic Algorithm Optimization of Support Vector Machines. PACBB 2012: 43-51
[c67]
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Pedro Lopes, Rafael Mendonça, Hugo Rocha, Jorge Oliveira, Laura Vilarinho, Rosário Santos, José Luís Oliveira:
A Rare Disease Patient Manager. PACBB 2012: 173-180
2011
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Carlos Costa, Carlos Ferreira, Luís Bastião, Luís S. Ribeiro, Augusto Silva, José Luís Oliveira:
Dicoogle - an Open Source Peer-to-Peer PACS. J. Digit. Imaging 24(5): 848-856 (2011)
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Sérgio Matos, José Luís Oliveira:
Classification methods for finding articles describing protein-protein interactions in PubMed. J. Integr. Bioinform. 8(3) (2011)
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Adelaide Freitas, Vera Afreixo, Miguel Pinheiro, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos:
Improving the performance of the iterative signature algorithm for the identification of relevant patterns. Stat. Anal. Data Min. 4(1): 71-83 (2011)
[c66]
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Cândido Santos, Tiago Pedrosa, Carlos Costa, José Luís Oliveira:
On the Use of openEHR in a Portable PHR. HEALTHINF 2011: 351-356
[c65]
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Tiago Pedrosa, Rui Pedro Lopes, João C. Santos, Carlos Costa, José Luís Oliveira:
Hybrid Electronic Health Records. HEALTHINF 2011: 571-574
[c64]
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Pedro Lopes, José Luís Oliveira:
Towards knowledge federation in biomedical applications. I-SEMANTICS 2011: 87-94
[c63]
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Paulo Tavares, Pedro Gonçalves, José Luís Oliveira:
An IDE for NETCONF management applications. LANOMS 2011: 1-8
[c62]
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Sérgio Matos, José Luís Oliveira:
Prioritizing Literature Search Results Using a Training Set of Classified Documents. PACBB 2011: 381-388
[c61]
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Pedro Lopes, José Luís Oliveira:
COEUS: a semantic web application framework. SWAT4LS 2011: 66-73
[c60]
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Joel Arrais, Pedro Lopes, José Luís Oliveira:
Challenges Storing and Representing Biomedical Data. USAB 2011: 53-62
2010
[j6]
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Sérgio Matos, Joel Arrais, João Maia-Rodrigues, José Luís Oliveira:
Concept-based query expansion for retrieving gene related publications from MEDLINE. BMC Bioinform. 11: 212 (2010)
[j5]
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Joel Arrais, João Fernandes, João E. Pereira, José Luís Oliveira:
GeneBrowser 2: an application to explore and identify common biological traits in a set of genes. BMC Bioinform. 11: 389 (2010)
[c59]
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Tiago Pedrosa, Rui Pedro Lopes, João C. Santos, Carlos Costa, José Luís Oliveira:
Towards an EHR Architecture for Mobile Citizens. HEALTHINF 2010: 288-293
[c58]
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Luís S. Ribeiro, Luís Bastião, Carlos Costa, José Luís Oliveira:
Email-P2P Gateway to Distributed Medical Imaging Repositories. HEALTHINF 2010: 310-315
[c57]
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João C. Santos, Tiago Pedrosa, Carlos Costa, José Luís Oliveira:
Modelling a Portable Personal Health Record. HEALTHINF 2010: 465-468
[c56]
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David Campos, Sérgio Matos, José Luís Oliveira:
Recognition of Gene/Protein Names using Conditional Random Fields. KDIR 2010: 275-280
[c55]
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Sérgio Matos, Joel Arrais, José Luís Oliveira:
Expanding Gene-Based PubMed Queries. IWPACBB 2010: 61-68
[c54]
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Joel Arrais, João E. Pereira, Pedro Lopes, Sérgio Matos, José Luís Oliveira:
Improving Cross Mapping in Biomedical Databases. IWPACBB 2010: 69-76
[c53]
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José P. Lousado, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos:
An Application for Studying Tandem Repeats in Orthologous Genes. IWPACBB 2010: 109-115
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Pedro Lopes, José Luís Oliveira:
A Holistic Approach for Integrating Genomic Variation Information. JBI 2010: 42-49

2000 – 2009

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What is the meaning of the colors in the publication lists?

2009
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Carlos Costa, Filipe Freitas, Marco Pereira, Augusto Silva, José Luís Oliveira:
Indexing and retrieving DICOM data in disperse and unstructured archives. Int. J. Comput. Assist. Radiol. Surg. 4(1): 71-77 (2009)
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Carlos Costa, José Luís Oliveira, Augusto Silva, Vasco Gama Ribeiro, José Ribeiro:
Design, development, exploitation and assessment of a Cardiology Web PACS. Comput. Methods Programs Biomed. 93(3): 273-282 (2009)
[c51]
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Sérgio Matos, Anabela Barreiro, José Luís Oliveira:
Syntactic Parsing for Bio-molecular Event Detection from Scientific Literature. EPIA 2009: 79-85
[c50]
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Pedro Lopes, Davide Pinto, David Campos, José Luís Oliveira:
Arabella - A Directed Web Crawler. KDIR 2009: 270-273
[c49]
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Pedro Lopes, Joel Arrais, José Luís Oliveira:
Link Integrator - A Link-based Data Integration Architecture. KDIR 2009: 274-277
[c48]
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Pedro Gonçalves, Ricardo Azevedo, Diogo Gomes, José Luís Oliveira, Rui L. Aguiar:
Evaluation of policy-based admission control mechanisms in NGN. ICT 2009: 137-142
[c47]
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Pedro Gonçalves, Carlos Figueira, Ricardo Azevedo, Rui L. Aguiar, José Luís Oliveira:
A graphical user interface for policy composition in CIM-SPL. ICUMT 2009: 1-7
[c46]
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Pedro Gonçalves, José Luís Oliveira, Rui L. Aguiar:
An evaluation of network management protocols. Integrated Network Management 2009: 537-544
[c45]
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José P. Lousado, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos:
Analysing the Evolution of Repetitive Strands in Genomes. IWANN (2) 2009: 1047-1054
[c44]
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Pedro Lopes, Joel Arrais, José Luís Oliveira:
DynamicFlow: A Client-Side Workflow Management System. IWANN (2) 2009: 1101-1108
2008
[c43]
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Pedro Almeida, Laura Carreto, José Luís Oliveira:
Design of Microarray Probes for Detection of Mutations. BIOTECHNO 2008: 137-142
[c42]
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José P. Lousado, Gabriela R. Moura, Manuel A. S. Santos, José Luís Oliveira:
Exploiting Codon-Triplets Association for Genome Primary Structure Analysis. BIOTECHNO 2008: 155-158
[c41]
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Miguel Pinheiro, José Luís Oliveira, Gabriela R. Moura, Manuel A. S. Santos:
Studying the Evolution of Codon Context in Conserved Gene Sequences. BIOTECHNO 2008: 159-163
[c40]
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Joel Arrais, Laura Carreto, Manuel A. S. Santos, José Luís Oliveira:
A Microarray Information Database. BIOTECHNO 2008: 170-175
[c39]
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Pedro Lopes, Joel Arrais, José Luís Oliveira:
Dynamic service integration using web-based workflows. iiWAS 2008: 622-625
[c38]
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Joel Arrais, João G. L. M. Rodrigues, José Luís Oliveira:
Improving Literature Searches in Gene Expression Studies. IWPACBB 2008: 74-82
2007
[j2]
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Joel Arrais, Bruno Santos, João Fernandes, Laura Carreto, Manuel A. S. Santos, José Luís Oliveira:
GeneBrowser: an approach for integration and functional classification of genomics data. J. Integr. Bioinform. 4(3) (2007)
[c37]
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Daniel Ferreira Polónia, Carlos M. A. Costa, José Luís Oliveira:
A MODEL to Optimize the Use of Imaging Equipment and Human Skills Scattered in Very Large Geographical Areas. ICEIS (4) 2007: 208-212
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Carlos Costa, Augusto Silva, José Luís Oliveira:
Current Perspectives on PACS and a Cardiology Case Study. Advanced Computational Intelligence Paradigms in Healthcare - 2 2007: 79-108
2006
[c36]
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Daniel Ferreira Polónia, Joel Arrais, José Luís Oliveira:
A Prospective Study on the Integration of Microarray Data in HIS/EPR. ISBMDA 2006: 231-239
[c35]
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Gaspar S. Dias, José Luís Oliveira, Javier Vicente, Fernando Martín-Sánchez:
Integrating Medical and Genomic Data: a Sucessful Example for Rare Diseases. MIE 2006: 125-130
2005
[c34]
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José Luís Oliveira, Pedro Gonçalves, Wojciech Dziunikowski, Jacek Wszolek, Sonny Rasmussen, Rui Pedro Lopes, Vitor Roque:
Policy-Based Network Management in an Integrated Mobile Network. AICT/SAPIR/ELETE 2005: 59-64
[c33]
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Pedro Gonçalves, José Luís Oliveira, Rui L. Aguiar:
A WBEM based solution for a 4G network integrated management. ICAS/ICNS 2005: 29
[c32]
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Hélder Veiga, Teresa Pinho, José Luís Oliveira, Rui Valadas, Paulo Salvador, António Nogueira:
Active Traffic Monitoring for Heterogeneous Environments. ICN (1) 2005: 603-610
[c31]
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Rui Pedro Lopes, Nuno Raimundo, Maria João Varanda Pereira, José Luís Oliveira, Vitor Roque:
Executable Graphics for PBNM. IPOM 2005: 108-117
[c30]
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Carlos Costa, José Luís Oliveira, Augusto Silva, Vasco Gama Ribeiro, José Ribeiro:
Data Management and Visualization Issues in a Fully Digital Echocardiography Laboratory. ISBMDA 2005: 13-21
[c29]
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Gaspar S. Dias, José Luís Oliveira, Francisco-Javier Vicente, Fernando Martín-Sánchez:
Integration of Genetic and Medical Information Through a Web Crawler System. ISBMDA 2005: 78-88
[c28]
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Daniel Ferreira Polónia, Carlos Costa, José Luís Oliveira:
Architecture Evaluation for the Implementation of a Regional Integrated Electronic Health Record. MIE 2005: 379-384
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José Luís Oliveira, Victor Maojo, Fernando Martín-Sánchez, António Sousa Pereira:
Biological and Medical Data Analysis, 6th International Symposium, ISBMDA 2005, Aveiro, Portugal, November 10-11, 2005, Proceedings. Lecture Notes in Computer Science 3745, Springer 2005, ISBN 3-540-29674-3 [contents]
2004
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Carlos Costa, José Luís Oliveira, Augusto Silva:
E-Services in Mission-Critical Organizations: Identification Enforcement. ICEIS (4) 2004: 389-396
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Vitor Roque, José Luís Oliveira, Rui Pedro Lopes:
Solving Transactional Control in Current Management Frameworks. ICEIS (4) 2004: 523-526
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Daniel Ferreira Polónia, Ilídio Oliveira, José Luís Oliveira:
A Business Process Model for Public Health Information Systems: A Governmental Perspective. ICEIS (3) 2004: 573-576
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José Luís Oliveira, Gaspar S. Dias, Ilídio Oliveira, Patrícia Rocha, Isabel Hermosilla, Javier Vicente, Inmaculada Spiteri, Fernando Martín-Sánchez, António Sousa Pereira:
DiseaseCard: A Web-Based Tool for the Collaborative Integration of Genetic and Medical Information. ISBMDA 2004: 409-417
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Miguel Pinheiro, José Luís Oliveira, Manuel A. S. Santos, Hugo Rocha, M. Luis Cardoso, Laura Vilarinho:
NeoScreen: A Software Application for MS/MS Newborn Screening Analysis. ISBMDA 2004: 450-457
2003
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Carlos Costa, José Luís Oliveira, Augusto Silva, Vasco Gama Ribeiro:
An integrated access interface to multimedia EPR. CARS 2003: 880-886
[c21]
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Rui Pedro Lopes, José Luís Oliveira:
Application Scenarios for Distributed Management Using Snmp Expressions. ICEIS (4) 2003: 49-54
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Carlos M. A. Costa, José Luís Oliveira, Augusto Silva:
A New User-Oriented Model to Manage Multiple Digital Credentials. ICEIS (4) 2003: 190-196
[c19]
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Rui Pedro Lopes, José Luís Oliveira:
Agentapi: An Api for the Development of Managed Agents. ICEIS (4) 2003: 438-443
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Vitor Roque, José Luís Oliveira, Rui Pedro Lopes:
Policies Composition Through Graphical Components. ICEIS (4) 2003: 464-467
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Carlos Costa, José Luís Oliveira, Augusto Silva:
Critical Information Systems Authentication Based on PKC and Biometrics. ICWE 2003: 543-544
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Carlos Costa, José Luís Oliveira, Augusto Silva:
Electronic Patient Record Virtually Unique Based on a Crypto Smart Card. ICWE 2003: 545-546
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Rui Pedro Lopes, José Luís Oliveira:
Delegation of Expressions for Distributed SNMP Information Processing. Integrated Network Management 2003: 395-408
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Rui Pedro Lopes, José Luís Oliveira:
A Mobile Agent Manager. MATA 2003: 220-229
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Carlos Costa, José Luís Oliveira, Augusto Silva, Vasco Gama Ribeiro:
A New Concept for an Integrated Healthcare Access Model. MIE 2003: 101-106
2002
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Rui Pedro Lopes, José Luís Oliveira:
Multi-management Schemes for MAF Platforms. MATA 2002: 11-20
2001
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Rui Pedro Lopes, José Luís Oliveira:
A New Mechanism for Distributed Managers Persistence. ICEIS (2) 2001: 1040-1045
[c10]
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José Luís Oliveira, Rui L. Aguiar:
QoS Negotiation Based on Management Delegates. ICEIS (2) 2001: 1067-1074
[c9]
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Carlos M. A. Costa, José Luís Oliveira, Augusto Silva:
A Trusted Brokering Service for PKI Interoperability and Thin-Clients Integration. ICEIS (2) 2001: 1179-1182
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Rui Pedro Lopes, José Luís Oliveira:
SNMP Management of MASIF Platforms. Integrated Network Management 2001: 313-316
2000
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Rui Pedro Lopes, José Luís Oliveira:
On the Use of Mobility in Distributed Network Management. HICSS 2000
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José Luís Oliveira, Rui L. Aguiar:
Network and Desktop Management Convergence. HICSS 2000

1990 – 1999

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1999
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Rui L. Aguiar, José Luís Oliveira:
New Services on an Advanced Internet. ECMAST 1999: 197-211
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Rui L. Aguiar, José Luís Oliveira:
Issues on Internet Evolution and Management. ICEIS 1999: 563-571
[c3]
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Rui Pedro Lopes, José Luís Oliveira:
Software Agents in Network Management. ICEIS 1999: 674-681
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Jorge S. C. Mota, José Luís Oliveira, Fernando Ramos:
A Remote Meteorological Data Service Supported on CORBA. ICEIS 1999: 690-697
1994
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José Luís Oliveira, Joaquim Arnaldo Martins:
A Management Architecture Based on Network Topology Information. J. Netw. Syst. Manag. 2(4): 401-414 (1994)
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José Luís Oliveira, Joaquim Arnaldo Martins:
A Methodology to Represent Logical Network Topology Information. NOMS 1994: 196-206

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