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2020 – today
- 2022
[c6]Zarif L. Azher, Louis J. Vaickus, Lucas A. Salas
, Brock C. Christensen, Joshua J. Levy:
Development of biologically interpretable multimodal deep learning model for cancer prognosis prediction. SAC 2022: 636-644- 2021
- [c5]Joshua J. Levy, Christian Haudenschild, Clark Barwick, Brock C. Christensen, Louis J. Vaickus:
Topological Feature Extraction and Visualization of Whole Slide Images using Graph Neural Networks. PSB 2021 - 2020
- [j9]Joshua J. Levy, Alexander J. Titus, Curtis L. Petersen, Youdinghuan Chen, Lucas A. Salas, Brock C. Christensen:
MethylNet: an automated and modular deep learning approach for DNA methylation analysis. BMC Bioinform. 21(1): 108 (2020) - [c4]Joshua J. Levy, Christopher R. Jackson, Aravindhan Sriharan, Brock C. Christensen, Louis J. Vaickus:
Preliminary Evaluation of the Utility of Deep Generative Histopathology Image Translation at a Mid-sized NCI Cancer Center. BIOINFORMATICS 2020: 302-311 - [c3]Joshua J. Levy, Lucas A. Salas, Brock C. Christensen, Aravindhan Sriharan, Louis J. Vaickus:
PathFlowAI: A High-Throughput Workflow for Preprocessing, Deep Learning and Interpretation inDigital Pathology. PSB 2020: 403-414 - [i1]Joshua J. Levy, Rebecca M. Lebeaux, Anne G. Hoen, Brock C. Christensen, Louis J. Vaickus, Todd A. MacKenzie:
Longevity Associated Geometry Identified in Satellite Images: Sidewalks, Driveways and Hiking Trails. CoRR abs/2003.08750 (2020)
2010 – 2019
- 2019
- [j8]Joshua J. Levy, Alexander J. Titus, Lucas A. Salas, Brock C. Christensen:
PyMethylProcess - convenient high-throughput preprocessing workflow for DNA methylation data. Bioinform. 35(24): 5379-5381 (2019) - 2018
- [c2]Alexander J. Titus, Carly A. Bobak, Brock C. Christensen:
A New Dimension of Breast Cancer Epigenetics - Applications of Variational Autoencoders with DNA Methylation. BIOINFORMATICS 2018: 140-145 - 2016
- [j7]Eugene Andres Houseman, Kevin C. Johnson, Brock C. Christensen:
OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA. Bioinform. 32(16): 2505-2507 (2016) - [j6]Alexander J. Titus, Eugene Andres Houseman, Kevin C. Johnson, Brock C. Christensen:
methyLiftover: cross-platform DNA methylation data integration. Bioinform. 32(16): 2517-2519 (2016) - [j5]Devin C. Koestler, Meaghan J. Jones, Joseph Usset, Brock C. Christensen, Rondi A. Butler, Michael S. Kobor, John K. Wiencke, Karl T. Kelsey:
Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL). BMC Bioinform. 17: 120 (2016) - 2012
- [j4]Eugene Andres Houseman, William P. Accomando, Devin C. Koestler, Brock C. Christensen, Carmen J. Marsit, Heather H. Nelson, John K. Wiencke, Karl T. Kelsey:
DNA methylation arrays as surrogate measures of cell mixture distribution. BMC Bioinform. 13: 86 (2012) - 2010
- [j3]Devin C. Koestler, Carmen J. Marsit, Brock C. Christensen, Margaret R. Karagas, Raphael Bueno, David J. Sugarbaker, Karl T. Kelsey, Eugene Andres Houseman:
Semi-supervised recursively partitioned mixture models for identifying cancer subtypes. Bioinform. 26(20): 2578-2585 (2010)
2000 – 2009
- 2009
- [j2]Eugene Andres Houseman, Brock C. Christensen, Margaret R. Karagas, Margaret R. Wrensch, Heather H. Nelson, Joseph Wiemels, Shichun Zheng, John K. Wiencke, Karl T. Kelsey, Carmen J. Marsit:
Copy number variation has little impact on bead-array-based measures of DNA methylation. Bioinform. 25(16): 1999-2005 (2009) - 2008
- [j1]Eugene Andres Houseman, Brock C. Christensen, Ru-Fang Yeh, Carmen J. Marsit, Margaret R. Karagas, Margaret R. Wrensch, Heather H. Nelson, Joseph Wiemels, Shichun Zheng, John K. Wiencke, Karl T. Kelsey:
Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions. BMC Bioinform. 9 (2008) - [c1]Yuanyuan Xiao, Mark R. Segal, Eugene Andres Houseman, Joseph Wiemels, John K. Wiencke, Shichun Zheng, Margaret R. Wrensch, Brock C. Christensen, Carmen J. Marsit, Karl T. Kelsey, Heather H. Nelson, Margaret R. Karagas, Ru-Fang Yeh:
Analysis of High-throughput DNA Methylation Bead Arrays Utilizing Bayesian Genotyping Algorithms. BMEI (1) 2008: 447-452
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