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ORCIDSacha A. F. T. van Hijum
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2010 – 2019
- 2016
[j20]Wynand Alkema
, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum:
Microbial bioinformatics for food safety and production. Briefings Bioinform. 17(2): 283-292 (2016)- 2015
- [j19]Lex Overmars, Sacha A. F. T. van Hijum, Roland J. Siezen, Christof Francke:
CiVi: circular genome visualization with unique features to analyze sequence elements. Bioinform. 31(17): 2867-2869 (2015) - 2013
- [j18]Wouter G. Touw, Jumamurat R. Bayjanov, Lex Overmars, Lennart Backus, Jos Boekhorst, Michiel Wels, Sacha A. F. T. van Hijum:
Data mining in the Life Sciences with Random Forest: a walk in the park or lost in the jungle? Briefings Bioinform. 14(3): 315-326 (2013) - 2011
- [j17]Bas E. Dutilh, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen:
FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinform. 27(14): 1929-1933 (2011) - [j16]Kasper Dinkla, Michel A. Westenberg, H. M. Timmerman, Sacha A. F. T. van Hijum, Jarke J. van Wijk:
Comparison of Multiple Weighted Hierarchies: Visual Analytics for Microbe Community Profiling. Comput. Graph. Forum 30(3): 1141-1150 (2011) - 2010
- [j15]Jumamurat R. Bayjanov, Roland J. Siezen, Sacha A. F. T. van Hijum:
PanCGHweb: a web tool for genotype calling in pangenome CGH data. Bioinform. 26(9): 1256-1257 (2010) - [j14]Michel A. Westenberg, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum:
SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks. Bioinform. 26(22): 2922-2923 (2010)
2000 – 2009
- 2009
- [j13]Rutger W. W. Brouwer, Sacha A. F. T. van Hijum, Oscar P. Kuipers:
MINOMICS: visualizing prokaryote transcriptomics and proteomics data in a genomic context. Bioinform. 25(1): 139-140 (2009) - [j12]Evert-Jan Blom, Jos B. T. M. Roerdink, Oscar P. Kuipers, Sacha A. F. T. van Hijum:
MOTIFATOR: detection and characterization of regulatory motifs using prokaryote transcriptome data. Bioinform. 25(4): 550-551 (2009) - 2008
- [j11]Rutger W. W. Brouwer, Oscar P. Kuipers, Sacha A. F. T. van Hijum:
The relative value of operon predictions. Briefings Bioinform. 9(5): 367-375 (2008) - [j10]Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J. Hofstede, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers:
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites. BMC Bioinform. 9 (2008) - [j9]Sacha A. F. T. van Hijum, Richard J. S. Baerends, Aldert L. Zomer, Harma A. Karsens, Victoria Martin-Requena, Oswaldo Trelles, Jan Kok, Oscar P. Kuipers:
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons. BMC Bioinform. 9 (2008) - [j8]Michel A. Westenberg, Sacha A. F. T. van Hijum, Oscar P. Kuipers, Jos B. T. M. Roerdink:
Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context. Comput. Graph. Forum 27(3): 887-894 (2008) - [p1]Michel A. Westenberg, Sacha A. F. T. van Hijum, Andrzej T. Lulko, Oscar P. Kuipers, Jos B. T. M. Roerdink:
Interactive Visualization of Gene Regulatory Networks with Associated Gene Expression Time Series Data. Visualization in Medicine and Life Sciences 2008: 293-311 - 2007
- [j7]Evert-Jan Blom, Dinne W. J. Bosman, Sacha A. F. T. van Hijum, Rainer Breitling, Lars Tijsma, Remko Silvis, Jos B. T. M. Roerdink, Oscar P. Kuipers:
FIVA: Functional Information Viewer and Analyzer extracting biological knowledge from transcriptome data of prokaryotes. Bioinform. 23(9): 1161-1163 (2007) - 2006
- [j6]Casper J. Albers, Ritsert C. Jansen, Jan Kok, Oscar P. Kuipers, Sacha A. F. T. van Hijum:
SIMAGE: simulation of DNA-microarray gene expression data. BMC Bioinform. 7: 205 (2006) - [j5]Anne de Jong, Sacha A. F. T. van Hijum, Jetta J. E. Bijlsma, Jan Kok, Oscar P. Kuipers:
BAGEL: a web-based bacteriocin genome mining tool. Nucleic Acids Res. 34(Web-Server-Issue): 273-279 (2006) - 2005
- [j4]Sacha A. F. T. van Hijum, Aldert L. Zomer, Oscar P. Kuipers, Jan Kok:
Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies. Nucleic Acids Res. 33(Web-Server-Issue): 560-566 (2005) - 2004
- [j3]Morris A. Swertz, Engbert O. de Brock, Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Richard J. S. Baerends, Jan Kok, Oscar P. Kuipers, Ritsert C. Jansen:
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases. Bioinform. 20(13): 2075-2083 (2004) - 2003
- [j2]Sacha A. F. T. van Hijum, Anne de Jong, Girbe Buist, Jan Kok, Oscar P. Kuipers:
UniFrag and GenomePrimer: selection of primers for genome-wide production of unique amplicons. Bioinform. 19(12): 1580-1582 (2003) - [j1]Jorge García de la Nava, Sacha A. F. T. van Hijum, Oswaldo Trelles:
PreP: gene expression data pre-processing. Bioinform. 19(17): 2328-2329 (2003)
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