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ORCIDIrene Otero-Muras
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2020 – today
- 2024
[c3]Mihály A. Vághy, Irene Otero-Muras, Gábor Szederkényi:
Analysis and Control of Gene Regulation Network Models Using Kinetic Semi-Discretization. ECC 2024: 1264-1269- 2023
- [j15]Carlos Sequeiros, Manuel Pájaro
, Carlos Vázquez, Julio R. Banga, Irene Otero-Muras:
IDESS: a toolbox for identification and automated design of stochastic gene circuits. Bioinform. 39(10) (2023) - [j14]Carlos Sequeiros, Irene Otero-Muras, Carlos Vázquez, Julio R. Banga:
Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1971-1982 (2023) - 2022
- [j13]Brandon Reyes, Irene Otero-Muras, Vladislav A. Petyuk:
A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws. BMC Bioinform. 23(1): 1 (2022) - [c2]Manuel Pájaro, Antonio A. Alonso, Irene Otero-Muras:
Chemical Master Equation model to predict the COVID-19 epidemic spread. XoveTIC 2022: 63-66 - 2020
- [j12]Pencho Yordanov, Jörg Stelling, Irene Otero-Muras:
BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks. Bioinform. 36(5): 1640-1641 (2020) - [j11]Brandon Reyes, Irene Otero-Muras, Michael T. Shuen, Alexandre M. Tartakovsky, Vladislav A. Petyuk:
CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks. Bioinform. 36(12): 3922-3924 (2020)
2010 – 2019
- 2018
- [j10]Manuel Pájaro, Irene Otero-Muras, Carlos Vázquez, Antonio A. Alonso:
SELANSI: a toolbox for simulation of stochastic gene regulatory networks. Bioinform. 34(5): 893-895 (2018) - [j9]Antonio A. Alonso, Irene Otero-Muras, Manuel Pájaro:
Routes to Multiple Equilibria for Mass-Action Kinetic Systems. Complex. 2018: 3912627:1-3912627:13 (2018) - 2017
- [j8]Irene Otero-Muras, Pencho Yordanov, Jörg Stelling:
Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling. PLoS Comput. Biol. 13(4) (2017) - 2016
- [j7]Irene Otero-Muras, David Henriques, Julio R. Banga:
SYNBADm: a tool for optimization-based automated design of synthetic gene circuits. Bioinform. 32(21): 3360-3362 (2016) - 2014
- [j6]Irene Otero-Muras, Julio R. Banga:
Multicriteria global optimization for biocircuit design. BMC Syst. Biol. 8: 113 (2014) - [j5]Irene Otero-Muras, Pencho Yordanov, Jörg Stelling:
A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves. BMC Syst. Biol. 8: 114 (2014) - [c1]Irene Otero-Muras, Julio R. Banga:
Optimization Based Design of Synthetic Oscillators from Standard Biological Parts. CMSB 2014: 225-238 - 2010
- [j4]Irene Otero-Muras, Amaya Franco-Uría, Antonio A. Alonso, Eva Balsa-Canto:
Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implications. Environ. Model. Softw. 25(3): 344-353 (2010)
2000 – 2009
- 2008
- [j3]Irene Otero-Muras, Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso:
Dynamic analysis and control of biochemical reaction networks. Math. Comput. Simul. 79(4): 999-1009 (2008) - [j2]Irene Otero-Muras, Gábor Szederkényi, Antonio A. Alonso, Katalin M. Hangos:
Local dissipative Hamiltonian description of reversible reaction networks. Syst. Control. Lett. 57(7): 554-560 (2008) - 2007
- [j1]Luis T. Antelo, Irene Otero-Muras, Julio R. Banga, Antonio A. Alonso:
A systematic approach to plant-wide control based on thermodynamics. Comput. Chem. Eng. 31(5-6): 677-691 (2007)
Coauthor Index
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