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ORCIDAnna Maria Masci
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2020 – today
- 2024
[j12]Anthony Huffman, Xumeng Zhang, Meghana Lanka, Jie Zheng, Anna Maria Masci, Yongqun He:
Ontological representation, modeling, and analysis of parasite vaccines. J. Biomed. Semant. 15(1): 4 (2024)- [j11]Jie Zheng, Xingxian Li, Anna Maria Masci, Hayleigh Kahn, Anthony Huffman, Eliyas Asfaw, Yuanyi Pan, Jinjing Guo, Virginia He, Justin Song, Andrey I. Seleznev, Asiyah Yu Lin, Yongqun He:
Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis. J. Biomed. Semant. 15(1): 12 (2024) - 2023
- [c8]Anthony Huffman, Edison Ong, Timothy Brunson, Nasim Sanati, Jie Zheng, Anna Maria Masci, Guanming Wu, Yongqun He:
Ontology-based Representation and Analysis of Conditional Vaccine Immune Responses Using Omics Data. ICBO 2023: 1-12 - 2022
- [j10]Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale
, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. 13(1): 25 (2022) - [c7]Anna Maria Masci, Stephanie Holmgren, Charles Schmitt, Rima Habre, Anne E. Thessen, Rebecca Boyles, Carmen J. Marsit:
Environmental Health Language Collaborative (EHLC): a Route to Environmental Health Science Data Harmonization. ICBO 2022: 1-6 - 2021
- [j9]Anthony Huffman, Anna Maria Masci, Jie Zheng, Nasim Sanati, Timothy Brunson, Guanming Wu, Yongqun He:
CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature. J. Biomed. Semant. 12(1): 18 (2021) - [j8]Anna Maria Masci, Scott White, Ben Neely, Maryanne Ardini-Polaske, Carol B. Hill, Ravi S. Misra, Bruce J. Aronow, Nathan Gaddis, Lina Yang, Susan E. Wert, Scott M. Palmer, Cliburn Chan:
Ontology-guided segmentation and object identification for developmental mouse lung immunofluorescent images. BMC Bioinform. 22(1): 82 (2021)
2010 – 2019
- 2019
- [j7]Yongqun He, Haihe Wang, Jie Zheng, Daniel P. Beiting, Anna Maria Masci, Hong Yu, Kaiyong Liu, Jianmin Wu, Jeffrey L. Curtis, Barry Smith, Alexander V. Alekseyenko, Jihad S. Obeid:
OHMI: the ontology of host-microbiome interactions. J. Biomed. Semant. 10(1): 25 (2019) - [c6]Yongqun He, Jie Zheng, Anna Maria Masci, Jihad S. Obeid:
Alignment of the Ontology of Host-Microbiome Interactions (OHMI) High Level Terms with Existing OBO Ontologies. ICBO 2019: 1 - 2018
- [c5]Anna Maria Masci, Shannon McCall, Alessandro Racioppi, Helena Judge Ellis, Jihad S. Obeid, Barry Smith, Christian J. Stoeckert Jr., Jie Zheng:
Standardization of the Histopathology Cancer Report: An Ontological Approach. ICBO 2018 - 2016
- [j6]Mathias Brochhausen, Jie Zheng, David L. Birtwell, Heather Williams, Anna Maria Masci, Helena Judge Ellis, Christian J. Stoeckert Jr.:
OBIB-a novel ontology for biobanking. J. Biomed. Semant. 7: 23 (2016) - [j5]Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred O. Hero III, Barry Smith, Yongqun He:
The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis. J. Biomed. Semant. 7: 53 (2016) - 2014
- [j4]Darren A. Natale, Cecilia N. Arighi, Judith A. Blake, Carol J. Bult, Karen R. Christie, Julie Cowart, Peter D'Eustachio, Alexander D. Diehl, Harold J. Drabkin, Olivia Helfer, Hongzhan Huang, Anna Maria Masci, Jia Ren, Natalia V. Roberts, Karen Ross, Alan Ruttenberg, Veronica Shamovsky, Barry Smith, Meher Shruti Yerramalla, Jian Zhang, Aisha AlJanahi, Irem Çelen, Cynthia Gan, Mengxi Lv, Emily Schuster-Lezell, Cathy H. Wu:
Protein Ontology: a controlled structured network of protein entities. Nucleic Acids Res. 42(Database-Issue): 415-421 (2014) - [c4]Jie Zheng, Marcelline R. Harris, Anna Maria Masci, Yu Lin, Alfred O. Hero III, Barry Smith, Yongqun He:
OBCS: The Ontology of Biological and Clinical Statistics. ICBO 2014: 65 - 2011
- [j3]Terrence F. Meehan, Anna Maria Masci, Amina Abdulla, Lindsay G. Cowell, Judith A. Blake, Christopher J. Mungall, Alexander D. Diehl:
Logical Development of the Cell Ontology. BMC Bioinform. 12: 6 (2011) - [j2]Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall:
Hematopoietic cell types: Prototype for a revised cell ontology. J. Biomed. Informatics 44(1): 75-79 (2011) - [c3]Mikhail K. Levin, Alan Ruttenberg, Anna Maria Masci, Lindsay G. Cowell:
owl_cpp, a C++ Library for Working with OWL Ontologies. ICBO 2011 - [c2]Anna Maria Masci, Mikhail K. Levin, Alan Ruttenberg, Lindsay G. Cowell:
Connecting Ontologies for the Representation of Biological Pathways. ICBO 2011 - [c1]Anna Maria Masci, Jeffrey Roach, Bernard de Bono, Pierre Grenon, Lindsay G. Cowell:
Bridging Multiple Ontologies: Representation of the Liver Immune Response. ICBO 2011
2000 – 2009
- 2009
- [j1]Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell:
An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinform. 10 (2009)
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