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ORCIDAndra Waagmeester
Person information
- affiliation: Micelio BV, Ekeren, Belgium
- affiliation: Amsterdam University Medical Center, Amsterdam, The Netherlands
- affiliation (former, PhD 2024): Maastricht University, Department of Bioinformatics, Maastricht, The Netherlands
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2020 – today
- 2025
[c15]Iovka Boneva
, José Emilio Labra Gayo, Eric Prud'hommeaux, Katherine Thornton, Andra Waagmeester:
Shape Expressions with Inheritance. ESWC (1) 2025: 481-499- [i1]Iovka Boneva, José Emilio Labra Gayo, Eric Prud'hommeaux, Katherine Thornton, Andra Waagmeester:
Shape Expressions with Inheritance. CoRR abs/2503.24299 (2025) - 2024
- [j16]César Henrique Bernabé, Lieze Thielemans, Rajaram Kaliyaperumal, Claudio Carta, Shuxin Zhang, Celia W. G. van Gelder, Nirupama Benis, Luiz Olavo Bonino da Silva Santos, Ronald Cornet, Bruna dos Santos Vieira, Nawel Lalout, Inês Henriques, Alberto Cámara Ballesteros, Kees Burger, Martijn G. Kersloot, Friederike Ehrhart, Esther van Enckevort, Chris T. A. Evelo, Alasdair J. G. Gray, Marc Hanauer, Kristina M. Hettne, Joep de Ligt, Arnaldo Pereira, Núria Queralt-Rosinach, Erik Schultes, Domenica Taruscio, Andra Waagmeester, Mark D. Wilkinson, Egon L. Willighagen, Mascha Jansen, Barend Mons, Marco Roos, Annika Jacobsen:
Building Expertise on FAIR Through Evolving Bring Your Own Data (BYOD) Workshops: Describing the Data, Software, and Management-focused Approaches and Their Evolution. Data Intell. 6(2): 429-456 (2024) - [j15]Seyed Amir Hosseini Beghaeiraveri, José Emilio Labra Gayo, Andra Waagmeester, Ammar Ammar, Carolina González, Denise N. Slenter, Sabah Ul-Hasan, Egon L. Willighagen, Fiona McNeill, Alasdair J. G. Gray:
Wikidata subsetting: Approaches, tools, and evaluation. Semantic Web 15(6): 2209-2235 (2024) - [c14]Daniel Fernández-Álvarez, Yasunori Yamamoto, José Emilio Labra Gayo, Andra Waagmeester:
Extracting shapes from large RDF data collections. SWAT4HCLS 2024: 66-75 - [c13]Josh Moore, Andra Waagmeester, Kristina M. Hettne, Katherine Wolstencroft, Susanne Kunis:
There and back again: RDF as a bridge to domain-platforms like OMERO. SWAT4HCLS 2024: 198-199 - [e5]Marco Roos, Annika Jacobsen, Andrea Splendiani, M. Scott Marshall, Andra Waagmeester, Leyla Jael García Castro, Katherine Wolstencroft, Kristina M. Hettne, Rutger A. Vos:
15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2024, Leiden, The Netherlands, February 20th to 26th, 2024. CEUR Workshop Proceedings, CEUR-WS.org 2024 [contents] - 2023
- [j14]Thomas Shafee, Daniel Mietchen, Tiago Lubiana, Dariusz Jemielniak, Andra Waagmeester:
Ten quick tips for editing Wikidata. PLoS Comput. Biol. 19(7) (2023) - [e4]Atsuko Yamaguchi, Andrea Splendiani, M. Scott Marshall, Chris Baker, Jerven T. Bolleman, Albert Burger, Leyla Jael Castro, Ole Eigenbrod, Sabine Österle, Martin Romacker, Andra Waagmeester:
14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), Basel, Switzerland, February 13-16, 2023. CEUR Workshop Proceedings 3415, CEUR-WS.org 2023 [contents] - 2022
- [j13]Birgit H. M. Meldal, Livia Perfetto, Colin W. Combe, Tiago Lubiana, João Vitor Ferreira Cavalcante, Hema Bye-A-Jee, Andra Waagmeester, Noemi del-Toro, Anjali Shrivastava, Elisabet Barrera, Edith D. Wong, Bernhard Mlecnik, Gabriela Bindea, Kalpana Panneerselvam, Egon L. Willighagen, Juri Rappsilber, Pablo Porras, Henning Hermjakob, Sandra E. Orchard:
Complex Portal 2022: new curation frontiers. Nucleic Acids Res. 50(D1): 578-586 (2022) - [e3]Katy Wolstencroft, Andrea Splendiani, M. Scott Marshall, Chris Baker, Andra Waagmeester, Marco Roos, Rutger A. Vos, Rianne Fijten, Leyla Jael Castro:
13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4HCLS 2022, Virtual Event, Leiden, The Netherlands, January 10th to 14th, 2022. CEUR Workshop Proceedings 3127, CEUR-WS.org 2022 [contents] - 2021
- [j12]Marvin Martens, Ammar Ammar, Anders Riutta, Andra Waagmeester, Denise N. Slenter, Kristina Hanspers, Ryan A. Miller, Daniela Digles, Elisson N. Lopes, Friederike Ehrhart, Lauren J. Dupuis, Laurent A. Winckers, Susan L. Coort, Egon L. Willighagen, Chris T. A. Evelo, Alexander R. Pico, Martina Kutmon:
WikiPathways: connecting communities. Nucleic Acids Res. 49(Database-Issue): D613-D621 (2021) - [j11]Kristina Hanspers, Martina Kutmon, Susan L. Coort, Daniela Digles, Lauren J. Dupuis, Friederike Ehrhart, Finterly Hu, Elisson N. Lopes, Marvin Martens, Nhung Pham, Woosub Shin, Denise N. Slenter, Andra Waagmeester, Egon L. Willighagen, Laurent A. Winckers, Chris T. A. Evelo, Alexander R. Pico:
Ten simple rules for creating reusable pathway models for computational analysis and visualization. PLoS Comput. Biol. 17(8) (2021) - 2020
- [j10]Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes:
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2(1-2): 10-29 (2020)
2010 – 2019
- 2019
- [j9]Tim E. Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, Marco Alvarado Cano, Gregory S. Stupp, Andra Waagmeester, Benjamin M. Good, Chunlei Wu, Andrew I. Su:
ChlamBase: a curated model organism database for the Chlamydia research community. Database J. Biol. Databases Curation 2019: baz091 (2019) - [c12]Katherine Thornton, Harold Solbrig, Gregory S. Stupp, José Emilio Labra Gayo, Daniel Mietchen, Eric Prud'hommeaux, Andra Waagmeester:
Using Shape Expressions (ShEx) to Share RDF Data Models and to Guide Curation with Rigorous Validation. ESWC 2019: 606-620 - [e2]Ronald Cornet, Andra Waagmeester:
12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences. CEUR Workshop Proceedings 2849, CEUR-WS.org 2019 [contents] - 2018
- [j8]Denise N. Slenter, Martina Kutmon, Kristina Hanspers, Anders Riutta, Jacob Windsor, Nuno Nunes, Jonathan Mélius, Elisa Cirillo, Susan L. Coort, Daniela Digles, Friederike Ehrhart, Pieter Giesbertz, Marianthi Kalafati, Marvin Martens, Ryan A. Miller, Kozo Nishida, Linda Rieswijk, Andra Waagmeester, Lars M. T. Eijssen, Chris T. A. Evelo, Alexander R. Pico, Egon L. Willighagen:
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. Nucleic Acids Res. 46(Database-Issue): D661-D667 (2018) - [c11]Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Gregory S. Stupp, Lynn M. Schriml, Mark Thompson, Andrew I. Su, Marco Roos:
Wikidata as an intuitive resource towards semantic data modeling in data FAIRification. SWAT4LS 2018 - [e1]Andra Waagmeester, Christopher J. O. Baker, Andrea Splendiani, Oya Deniz Beyan, M. Scott Marshall:
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2018, Antwerp, Belgium, December 3-6, 2018. CEUR Workshop Proceedings 2275, CEUR-WS.org 2018 [contents] - 2017
- [j7]Tim E. Putman, Sebastien Lelong, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Colin M. Diesh, Nathan A. Dunn, Monica C. Munoz-Torres, Gregory S. Stupp, Chunlei Wu, Andrew I. Su, Benjamin M. Good:
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata. Database J. Biol. Databases Curation 2017: bax025 (2017) - [c10]Claudio Carta, Marco Roos, Annika Jacobsen, Rajaram Kaliyaperumal, Mark Thompson, Mark D. Wilkinson, Ronald Cornet, Andra Waagmeester, David van Enckevort, Mascha Jansen, Luana Licata, Allegra Via, Domenica Taruscio:
The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop. SWAT4LS 2017 - 2016
- [j6]Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su:
Wikidata as a semantic framework for the Gene Wiki initiative. Database J. Biol. Databases Curation 2016 (2016) - [j5]Tim E. Putman, Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Chunlei Wu, Andrew I. Su, Benjamin M. Good:
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes. Database J. Biol. Databases Curation 2016 (2016) - [j4]Martina Kutmon, Anders Riutta, Nuno Nunes, Kristina Hanspers, Egon L. Willighagen, Anwesha Bohler, Jonathan Mélius, Andra Waagmeester, Sravanthi R. Sinha, Ryan A. Miller, Susan L. Coort, Elisa Cirillo, Bart Smeets, Chris T. A. Evelo, Alexander R. Pico:
WikiPathways: capturing the full diversity of pathway knowledge. Nucleic Acids Res. 44(Database-Issue): 488-494 (2016) - [j3]Andra Waagmeester, Martina Kutmon, Anders Riutta, Ryan A. Miller, Egon L. Willighagen, Chris T. A. Evelo, Alexander R. Pico:
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. PLoS Comput. Biol. 12(6) (2016) - [c9]Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester:
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative 2016 - [c8]Benjamin M. Good, Timothy Putman, Andrew I. Su, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka:
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative 2016 - [c7]Andra Waagmeester, Egon L. Willighagen, Núria Queralt Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good:
Linking Wikidata to the Rest of the Semantic Web. SWAT4LS 2016 - 2015
- [c6]Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good:
Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond. SWAT4LS 2015: 69-73 - 2014
- [j2]Alasdair J. G. Gray, Paul Groth, Antonis Loizou, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, Chris T. A. Evelo, Carole A. Goble, Lee Harland, Steve Pettifer, Mark Thompson, Andra Waagmeester, Antony J. Williams:
Applying linked data approaches to pharmacology: Architectural decisions and implementation. Semantic Web 5(2): 101-113 (2014) - [c5]Colin R. Batchelor, Christian Y. A. Brenninkmeijer, Christine Chichester, Mark Davies, Daniela Digles, Ian Dunlop, Chris T. A. Evelo, Anna Gaulton, Carole A. Goble, Alasdair J. G. Gray, Paul Groth, Lee Harland, Karen Karapetyan, Antonis Loizou, John P. Overington, Steve Pettifer, Jon Steele, Robert Stevens, Valery Tkachenko, Andra Waagmeester, Antony J. Williams, Egon L. Willighagen:
Scientific Lenses to Support Multiple Views over Linked Chemistry Data. ISWC (1) 2014: 98-113 - [c4]Marco Roos, Alasdair J. G. Gray, Andra Waagmeester, Mark Thompson, Rajaram Kaliyaperumal, Eelke van der Horst, Barend Mons, Mark D. Wilkinson:
Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices. SWAT4LS 2014 - 2013
- [j1]Egon L. Willighagen, Andra Waagmeester, Ola Spjuth, Peter Ansell, Antony J. Williams, Valery Tkachenko, Janna Hastings, Bin Chen, David J. Wild:
The ChEMBL database as linked open data. J. Cheminformatics 5: 23 (2013) - 2012
- [c3]Jason Priem, Cristhian Parra, Heather A. Piwowar, Paul Groth, Andra Waagmeester:
Uncovering impacts: a case study in using altmetrics tools. SePublica@ESWC 2012: 40-44 - [c2]Alasdair J. G. Gray, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, James M. Eales, Chris T. A. Evelo, Carole A. Goble, Paul Groth, Lee Harland, Antonis Loizou, Steve Pettifer, Rishi Ramgolam, Mark Thompson, Andra Waagmeester, Antony J. Williams:
The Pharmacology Workspace: A Platform for Drug Discovery. ICBO 2012 - [c1]Andrea Splendiani, Andra Waagmeester, Carina Haupt, Helena F. Deus:
SemScape: Visualizating Semantic Web Data Landscapes with Cytoscape 3.0. SWAT4LS 2012
Coauthor Index
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