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Christopher S. Henry
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2020 – today
- 2023
- [j15]Michael Shaffer
, Mikayla A. Borton
, Ben Bolduc, José P. Faria, Rory M. Flynn, Parsa Ghadermazi
, Janaka N. Edirisinghe, Elisha M. Wood-Charlson, Christopher S. Miller
, Siu Hung Joshua Chan
, Matthew B. Sullivan
, Christopher S. Henry, Kelly C. Wrighton
:
kb_DRAM: annotation and metabolic profiling of genomes with DRAM in KBase. Bioinform. 39(4) (2023) - [j14]Emanuel Cunha, Davide Lagoa, José P. Faria, Filipe Liu, Christopher S. Henry, Oscar Días
:
TranSyT, an innovative framework for identifying transport systems. Bioinform. 39(8) (2023) - 2022
- [j13]Valérie de Crécy-Lagard
, Rocio Amorin de Hegedus
, Cecilia N. Arighi
, Jill Babor, Alex Bateman
, Ian Blaby
, Crysten Blaby-Haas, Alan J. Bridge
, Stephen K. Burley
, Stacey Cleveland, Lucy J. Colwell, Ana Conesa
, Christian Dallago
, Antoine Danchin
, Anita de Waard
, Adam Deutschbauer, Raquel Dias, Yousong Ding
, Gang Fang, Iddo Friedberg
, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori
, Christopher S. Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu
, Aron Marchler-Bauer, Maria Jesus Martin
, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall
, Darren A. Natale
, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac
, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova
, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman
, Françoise Thibaud-Nissen, Paul D. Thomas
, Peter Uetz, David Vallenet
, Erica Watson Carter, Peter Weigele
, Valerie Wood
, Elisha M. Wood-Charlson, Jin Xu
:
A roadmap for the functional annotation of protein families: a community perspective. Database J. Biol. Databases Curation 2022(2022) (2022) - [j12]Rebecca L. Rubinstein
, Mikayla A. Borton, Haiyan Zhou, Michael Shaffer, David W. Hoyt, James Stegen, Christopher S. Henry, Kelly C. Wrighton, Roelof Versteeg:
ORT: a workflow linking genome-scale metabolic models with reactive transport codes. Bioinform. 38(3): 778-784 (2022) - 2021
- [j11]Zirou Qiu, Ruslan Shaydulin, Xiaoyuan Liu, Yuri Alexeev, Christopher S. Henry, Ilya Safro:
ELRUNA: Elimination Rule-based Network Alignment. ACM J. Exp. Algorithmics 26: 1.7:1-1.7:32 (2021) - [j10]Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry:
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). Nucleic Acids Res. 49(Database-Issue): D1555 (2021) - [j9]Samuel M. D. Seaver
, Filipe Liu
, Qizhi Zhang, James G. Jeffryes
, José P. Faria
, Janaka N. Edirisinghe
, Michael B. Mundy
, Nicholas Chia
, Elad Noor
, Moritz Emanuel Beber
, Aaron A. Best
, Matthew DeJongh
, Jeffrey A. Kimbrel
, Patrik D'haeseleer, Sean R. McCorkle
, Jay R. Bolton
, Erik Pearson
, Shane Canon
, Elisha M. Wood-Charlson
, Robert W. Cottingham
, Adam P. Arkin
, Christopher S. Henry
:
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. Nucleic Acids Res. 49(Database-Issue): D575-D588 (2021) - 2020
- [j8]Kim P. Huynh
, Christopher S. Henry, Gradon Nicholls, Mitchell W. Nicholson:
Benchmarking Bitcoin Adoption in Canada: Awareness, Ownership and Usage in 2018. Ledger 5 (2020)
2010 – 2019
- 2019
- [c2]Kevin Li, Rachel Chen, William Lindsey, Aaron A. Best, Matthew DeJongh, Christopher S. Henry, Nathan L. Tintle:
Implementing and Evaluating A Gaussian Mixture Framework for Identifying Gene Function from TnSeq Data. PSB 2019: 172-183 - [i2]Zirou Qiu, Ruslan Shaydulin
, Xiaoyuan Liu, Yuri Alexeev, Christopher S. Henry, Ilya Safro:
Network Alignment by Propagating Reliable Similarities. CoRR abs/1911.05486 (2019) - 2017
- [j7]Alice R. Wattam, James J. Davis, Rida Assaf, Sébastien Boisvert, Thomas S. Brettin, Christopher Bun, Neal Conrad, Emily M. Dietrich, Terry Disz, Joseph L. Gabbard
, Svetlana Gerdes, Christopher S. Henry, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Eric K. Nordberg, Gary J. Olsen, Daniel E. Murphy-Olson, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla
, Veronika Vonstein, Andrew S. Warren
, Fangfang Xia, Hyun Seung Yoo, Rick L. Stevens:
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center. Nucleic Acids Res. 45(Database-Issue): D535-D542 (2017) - 2016
- [j6]Christopher S. Henry:
The (nested) word problem. Inf. Process. Lett. 116(11): 729-734 (2016) - [j5]Matthew A. Oberhardt, Raphy Zarecki, Leah Reshef, Fangfang Xia, Miquel Duran-Frigola
, Rachel Schreiber, Christopher S. Henry, Nir Ben-Tal
, Daniel J. Dwyer, Uri Gophna
, Eytan Ruppin:
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli. PLoS Comput. Biol. 12(1) (2016) - 2015
- [j4]James G. Jeffryes, Ricardo L. Colastani, Mona Elbadawi-Sidhu, Tobias Kind
, Thomas D. Niehaus
, Linda J. Broadbelt, Andrew D. Hanson, Oliver Fiehn, Keith E. J. Tyo, Christopher S. Henry:
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics. J. Cheminformatics 7: 44:1-44:8 (2015) - 2014
- [j3]José P. Faria
, Ross A. Overbeek, Fangfang Xia, Miguel Rocha
, Isabel Rocha
, Christopher S. Henry:
Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models. Briefings Bioinform. 15(4): 592-611 (2014) - [j2]Matthew N. Benedict, Michael B. Mundy
, Christopher S. Henry, Nicholas Chia, Nathan D. Price
:
Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. PLoS Comput. Biol. 10(10) (2014) - 2013
- [i1]Christopher S. Henry:
The (Nested) Word Problem. CoRR abs/1310.6283 (2013) - 2010
- [c1]José P. Faria
, Miguel Rocha, Rick L. Stevens, Christopher S. Henry:
Analysis of the Effect of Reversibility Constraints on the Predictions of Genome-Scale Metabolic Models. IWPACBB 2010: 209-215
2000 – 2009
- 2005
- [j1]Vassily Hatzimanikatis
, Chunhui Li, Justin A. Ionita, Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt:
Exploring the diversity of complex metabolic networks. Bioinform. 21(8): 1603-1609 (2005)
Coauthor Index
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last updated on 2024-06-10 20:32 CEST by the dblp team
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