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Journal Articles
- 2022
[j8]Jacob Neumann, Yen Ting Lin
, Abhishek Mallela, Ely F. Miller, Joshua Colvin, Abell T. Duprat, Ye Chen, William S. Hlavacek, Richard G. Posner:
Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit. Bioinform. 38(6): 1770-1772 (2022)- 2019
- [j7]Keesha E. Erickson, Oleksii S. Rukhlenko, MD Shahinuzzaman, Kalina P. Slavkova, Yen Ting Lin, Ryan Suderman, Edward C. Stites, Marian Anghel, Richard G. Posner, Dipak Barua, Boris N. Kholodenko, William S. Hlavacek:
Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor. PLoS Comput. Biol. 15(1) (2019) - 2016
- [j6]Brandon R. Thomas, Lily A. Chylek, Joshua Colvin, Suman Sirimulla, Andrew H. A. Clayton, William S. Hlavacek, Richard G. Posner:
BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments. Bioinform. 32(5): 798-800 (2016) - [j5]Mathew R. Koebel, Grant Schmadeke, Richard G. Posner, Suman Sirimulla:
AutoDock VinaXB: implementation of XBSF, new empirical halogen bond scoring function, into AutoDock Vina. J. Cheminformatics 8(1): 27:1-27:8 (2016) - 2012
- [j4]Matthew S. Creamer, Edward C. Stites, Meraj Aziz, James A. Cahill, Chin Wee Tan, Michael E. Berens, Haiyong Han, Kimberly J. Bussey, Daniel D. Von Hoff, William S. Hlavacek, Richard G. Posner:
Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling. BMC Syst. Biol. 6: 107 (2012) - 2010
- [j3]Joshua Colvin, Michael I. Monine, Ryan N. Gutenkunst, William S. Hlavacek, Daniel D. Von Hoff, Richard G. Posner:
RuleMonkey: software for stochastic simulation of rule-based models. BMC Bioinform. 11: 404 (2010) - 2009
- [j2]Joshua Colvin, Michael I. Monine, James R. Faeder, William S. Hlavacek, Daniel D. Von Hoff, Richard G. Posner:
Simulation of large-scale rule-based models. Bioinform. 25(7): 910-917 (2009) - [j1]Bin Hu, G. Matthew Fricke, James R. Faeder, Richard G. Posner, William S. Hlavacek:
GetBonNie for building, analyzing and sharing rule-based models. Bioinform. 25(11): 1457-1460 (2009)
Coauthor Index
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