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Raunaq Malhotra
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Journal Articles
- 2024
- [j7]Weiling Li
, Raunaq Malhotra
, Steven H. Wu
, Manjari Jha
, Allen G. Rodrigo
, Mary Poss
, Raj Acharya
:
ViPRA-Haplo: De Novo Reconstruction of Viral Populations Using Paired End Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 21(3): 492-500 (2024) - 2019
- [j6]Xavier Bofill-De Ros
, Kevin Chen
, Susanna Chen, Nikola Tesic, Dusan Randjelovic, Nikola Skundric, Svetozar Nesic, Vojislav Varjacic, Elizabeth H. Williams
, Raunaq Malhotra, Minjie Jiang, Shuo Gu
:
QuagmiR: a cloud-based application for isomiR big data analytics. Bioinform. 35(9): 1576-1578 (2019) - [j5]Weiling Li, Lin Lin
, Raunaq Malhotra
, Lei Yang
, Raj Acharya, Mary Poss
:
A computational framework to assess genome-wide distribution of polymorphic human endogenous retrovirus-K In human populations. PLoS Comput. Biol. 15(3) (2019) - 2017
- [j4]Manjari Jha
, Raunaq Malhotra, Raj Acharya:
A Generalized Lattice Based Probabilistic Approach for Metagenomic Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 14(4): 749-761 (2017) - 2015
- [j3]Yang Liu, Francesca Chiaromonte, Howard Ross, Raunaq Malhotra, Daniel Elleder, Mary Poss:
Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data. BMC Bioinform. 16: 202:1-202:14 (2015) - 2014
- [j2]Le Bao, Daniel Elleder, Raunaq Malhotra, Michael Degiorgio, Theodora Maravegias, Lindsay Horvath, Laura Carrel, Colin Gillin, Tomás Hron
, Helena Fábryová
, David R. Hunter, Mary Poss:
Computational and Statistical Analyses of Insertional Polymorphic Endogenous Retroviruses in a Non-Model Organism. Comput. 2(4): 221-245 (2014) - 2013
- [j1]Shruthi Prabhakara, Raunaq Malhotra, Raj Acharya, Mary Poss:
Mutant-Bin: Unsupervised Haplotype Estimation of Viral Population Diversity Without Reference Genome. J. Comput. Biol. 20(6): 453-463 (2013)
Conference and Workshop Papers
- 2015
- [c3]Manjari Mukhopadhyay, Raunaq Malhotra, Raj Acharya:
A generalized lattice model for clustering metagenomic sequences. BCB 2015: 665-672 - 2013
- [c2]Raunaq Malhotra, Shruthi Prabhakara, Mary Poss, Raj Acharya:
Estimating Viral Haplotypes in a Population Using k-mer Counting. PRIB 2013: 265-276 - 2012
- [c1]Raunaq Malhotra, Shruthi Prabhakara, Raj Acharya:
Predicting V(D)J Recombination Using Conditional Random Fields. PRIB 2012: 210-221
Coauthor Index
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