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Yifan (Evan) Peng
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2020 – today
- 2021
[i28]Yunjin Zhang, Rui Wang, Yifan Peng, Wei Hua, Hujun Bao:
Color Contrast Enhanced Rendering for Optical See-through Head-mounted Displays. CoRR abs/2101.02847 (2021)- [i27]Yan Han, Chongyan Chen, Ahmed H. Tewfik, Ying Ding, Yifan Peng:
Pneumonia Detection on Chest X-ray using Radiomic Features and Contrastive Learning. CoRR abs/2101.04269 (2021) - 2020
- [j20]Qilin Sun
, Jian Zhang, Xiong Dun, Bernard Ghanem, Yifan Peng, Wolfgang Heidrich:
End-to-end Learned, Optically Coded Super-resolution SPAD Camera. ACM Trans. Graph. 39(2): 9:1-9:14 (2020) - [j19]Yifan Peng, Suyeon Choi, Nitish Padmanaban, Gordon Wetzstein:
Neural holography with camera-in-the-loop training. ACM Trans. Graph. 39(6): 185:1-185:14 (2020) - [c27]Yifan Peng, Sungwon Lee, Daniel C. Elton, Thomas C. Shen, Yuxing Tang, Qingyu Chen, Shuai Wang, Yingying Zhu, Ronald M. Summers, Zhiyong Lu:
Automatic recognition of abdominal lymph nodes from clinical text. ClinicalNLP@EMNLP 2020: 101-110 - [c26]Yifan Peng, Qingyu Chen, Zhiyong Lu:
An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining. BioNLP 2020: 205-214 - [c25]Christopher A. Metzler, Hayato Ikoma, Yifan Peng, Gordon Wetzstein:
Deep Optics for Single-Shot High-Dynamic-Range Imaging. CVPR 2020: 1372-1382 - [c24]Angshuman Paul, Thomas C. Shen, Niranjan Balachandar, Yuxing Tang, Yifan Peng, Zhiyong Lu, Ronald M. Summers:
COMe-SEE: Cross-modality Semantic Embedding Ensemble for Generalized Zero-Shot Diagnosis of Chest Radiographs. iMIMIC/MIL3ID/LABELS@MICCAI 2020: 103-111 - [c23]Yifan (Evan) Peng, Ashok Veeraraghavan, Wolfgang Heidrich, Gordon Wetzstein:
Deep optics: joint design of optics and image recovery algorithms for domain specific cameras. SIGGRAPH Courses 2020: 7:1-7:133 - [c22]Yifan Peng, Suyeon Choi, Nitish Padmanaban, Jonghyun Kim, Gordon Wetzstein:
Neural Holography. SIGGRAPH Emerging Technologies 2020: 8:1-8:2 - [i26]Yifan Peng, Qingyu Chen, Zhiyong Lu:
An Empirical Study of Multi-Task Learning on BERT for Biomedical Text Mining. CoRR abs/2005.02799 (2020) - [i25]Yifan Peng, Yuxing Tang, Sungwon Lee, Yingying Zhu, Ronald M. Summers, Zhiyong Lu:
COVID-19-CT-CXR: a freely accessible and weakly labeled chest X-ray and CT image collection on COVID-19 from biomedical literature. CoRR abs/2006.06177 (2020) - [i24]Xing He, Rui Zhang, Jordan Alpert, Sicheng Zhou, Terrence J. Adam, Aantaki Raisa, Yifan Peng, Hansi Zhang, Jiang Bian:
When text simplification is not enough: could a graph-based visualization facilitate consumers' comprehension of dietary supplement information? CoRR abs/2007.02333 (2020) - [i23]Yifan Peng, Tiarnan D. Keenan, Qingyu Chen, Elvira Agrón, Alexis Allot, Wai T. Wong, Emily Y. Chew, Zhiyong Lu:
Predicting risk of late age-related macular degeneration using deep learning. CoRR abs/2007.09550 (2020) - [i22]Lana Yeganova, Rezarta Islamaj Dogan, Qingyu Chen, Robert Leaman, Alexis Allot, Chih-Hsuan Wei, Donald C. Comeau, Won Kim, Yifan Peng, W. John Wilbur, Zhiyong Lu:
Navigating the landscape of COVID-19 research through literature analysis: A bird's eye view. CoRR abs/2008.03397 (2020) - [i21]Suyeon Choi, Jonghyun Kim, Yifan Peng, Gordon Wetzstein:
Michelson Holography: Dual-SLM Holography with Camera-in-the-loop Optimization. CoRR abs/2009.09302 (2020) - [i20]Yifan Peng, Lin Lin, Lexing Ying, Leonardo Zepeda-Núñez:
Efficient Long-Range Convolutions for Point Clouds. CoRR abs/2010.05295 (2020) - [i19]Qingyu Chen, Tiarnan D. L. Keenan, Alexis Allot, Yifan Peng, Elvira Agrón, Amitha Domalpally, Caroline C. W. Klaver, Daniel T. Luttikhuizen, Marcus H. Colyer, Catherine A. Cukras, Henry E. Wiley, M. Teresa Magone, Chantal Cousineau-Krieger, Wai T. Wong, Yingying Zhu, Emily Y. Chew, Zhiyong Lu:
Multi-modal, multi-task, multi-attention (M3) deep learning detection of reticular pseudodrusen: towards automated and accessible classification of age-related macular degeneration. CoRR abs/2011.05142 (2020) - [i18]Yan Han, Chongyan Chen, Liyan Tang, Mingquan Lin, Ajay Jaiswal, Ying Ding, Yifan Peng:
Using Radiomics as Prior Knowledge for Abnormality Classification and Localization in Chest X-rays. CoRR abs/2011.12506 (2020)
2010 – 2019
- 2019
- [j18]Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu:
ML-Net: multi-label classification of biomedical texts with deep neural networks. J. Am. Medical Informatics Assoc. 26(11): 1279-1285 (2019) - [j17]Praneeth Chakravarthula, Yifan Peng, Joel Kollin, Henry Fuchs, Felix Heide:
Wirtinger holography for near-eye displays. ACM Trans. Graph. 38(6): 213:1-213:13 (2019) - [j16]Nitish Padmanaban, Yifan Peng, Gordon Wetzstein:
Holographic near-eye displays based on overlap-add stereograms. ACM Trans. Graph. 38(6): 214:1-214:13 (2019) - [j15]Yifan Peng, Qilin Sun, Xiong Dun, Gordon Wetzstein, Wolfgang Heidrich, Felix Heide:
Learned large field-of-view imaging with thin-plate optics. ACM Trans. Graph. 38(6): 219:1-219:14 (2019) - [c21]Yifan Peng, Tiarnan D. Keenan, Qingyu Chen, Elvira Agrón, Wai T. Wong, Emily Y. Chew, Zhiyong Lu:
A deep learning-based survival model for prediction of progression in late Age-related Macular Degeneration (AMD) from color fundus photographs. AMIA 2019 - [c20]Yifan Peng, Shankai Yan, Zhiyong Lu:
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets. BioNLP@ACL 2019: 58-65 - [c19]Ke Yan, Yifan Peng, Veit Sandfort, Mohammadhadi Bagheri, Zhiyong Lu, Ronald M. Summers:
Holistic and Comprehensive Annotation of Clinically Significant Findings on Diverse CT Images: Learning From Radiology Reports and Label Ontology. CVPR 2019: 8523-8532 - [c18]Qingyu Chen, Yifan Peng, Zhiyong Lu:
BioSentVec: creating sentence embeddings for biomedical texts. ICHI 2019: 1-5 - [c17]Yifan Peng, Ke Yan, Veit Sandfort, Ronald M. Summers, Zhiyong Lu:
A self-attention based deep learning method for lesion attribute detection from CT reports. ICHI 2019: 1-5 - [c16]Ke Yan, Yifan Peng, Zhiyong Lu, Ronald M. Summers:
Fine-Grained Lesion Annotation in CT Images With Knowledge Mined From Radiology Reports. ISBI 2019: 285-288 - [c15]Ke Yan, Youbao Tang, Yifan Peng, Veit Sandfort, Mohammadhadi Bagheri, Zhiyong Lu, Ronald M. Summers:
MULAN: Multitask Universal Lesion Analysis Network for Joint Lesion Detection, Tagging, and Segmentation. MICCAI (6) 2019: 194-202 - [p2]Xiaosong Wang, Yifan Peng, Le Lu, Zhiyong Lu, Mohammadhadi Bagheri, Ronald M. Summers:
ChestX-ray: Hospital-Scale Chest X-ray Database and Benchmarks on Weakly Supervised Classification and Localization of Common Thorax Diseases. Deep Learning and Convolutional Neural Networks for Medical Imaging and Clinical Informatics 2019: 369-392 - [p1]Xiaosong Wang, Yifan Peng, Le Lu, Zhiyong Lu, Ronald M. Summers:
Automatic Classification and Reporting of Multiple Common Thorax Diseases Using Chest Radiographs. Deep Learning and Convolutional Neural Networks for Medical Imaging and Clinical Informatics 2019: 393-412 - [i17]Ke Yan, Yifan Peng, Zhiyong Lu, Ronald M. Summers:
Fine-grained lesion annotation in CT images with knowledge mined from radiology reports. CoRR abs/1903.01505 (2019) - [i16]Ke Yan, Yifan Peng, Veit Sandfort, Mohammadhadi Bagheri, Zhiyong Lu, Ronald M. Summers:
Holistic and Comprehensive Annotation of Clinically Significant Findings on Diverse CT Images: Learning from Radiology Reports and Label Ontology. CoRR abs/1904.04661 (2019) - [i15]Yifan Peng, Ke Yan, Veit Sandfort, Ronald M. Summers, Zhiyong Lu:
A self-attention based deep learning method for lesion attribute detection from CT reports. CoRR abs/1904.13018 (2019) - [i14]Tiarnan D. Keenan, Shazia Dharssi, Yifan Peng, Qingyu Chen, Elvira Agrón, Wai T. Wong, Zhiyong Lu, Emily Y. Chew:
A deep learning approach for automated detection of geographic atrophy from color fundus photographs. CoRR abs/1906.03153 (2019) - [i13]Yifan Peng, Shankai Yan, Zhiyong Lu:
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets. CoRR abs/1906.05474 (2019) - [i12]Christopher A. Metzler, Hayato Ikoma, Yifan Peng, Gordon Wetzstein:
Deep Optics for Single-shot High-dynamic-range Imaging. CoRR abs/1908.00620 (2019) - [i11]Ke Yan, Youbao Tang, Yifan Peng, Veit Sandfort, Mohammadhadi Bagheri, Zhiyong Lu, Ronald M. Summers:
MULAN: Multitask Universal Lesion Analysis Network for Joint Lesion Detection, Tagging, and Segmentation. CoRR abs/1908.04373 (2019) - 2018
- [j14]Yifan Peng, Anthony Rios, Ramakanth Kavuluru, Zhiyong Lu:
Extracting chemical-protein relations with ensembles of SVM and deep learning models. Database J. Biol. Databases Curation 2018: bay073 (2018) - [j13]Alexis Allot, Yifan Peng, Chih-Hsuan Wei, Kyubum Lee, Lon Phan, Zhiyong Lu:
LitVar: a semantic search engine for linking genomic variant data in PubMed and PMC. Nucleic Acids Res. 46(Webserver-Issue): W530-W536 (2018) - [j12]Vincent Sitzmann, Steven Diamond, Yifan Peng, Xiong Dun, Stephen P. Boyd, Wolfgang Heidrich, Felix Heide, Gordon Wetzstein:
End-to-end optimization of optics and image processing for achromatic extended depth of field and super-resolution imaging. ACM Trans. Graph. 37(4): 114:1-114:13 (2018) - [c14]Qilin Sun, Xiong Dun, Yifan Peng, Wolfgang Heidrich:
Depth and Transient Imaging With Compressive SPAD Array Cameras. CVPR 2018: 273-282 - [c13]Xiaosong Wang, Yifan Peng, Le Lu, Zhiyong Lu, Ronald M. Summers:
TieNet: Text-Image Embedding Network for Common Thorax Disease Classification and Reporting in Chest X-Rays. CVPR 2018: 9049-9058 - [c12]Yifan Peng, Xiong Dun, Qilin Sun, Felix Heide, Wolfgang Heidrich:
Focal sweep imaging with multi-focal diffractive optics. ICCP 2018: 1-8 - [i10]Xiaosong Wang, Yifan Peng, Le Lu, Zhiyong Lu, Ronald M. Summers:
TieNet: Text-Image Embedding Network for Common Thorax Disease Classification and Reporting in Chest X-rays. CoRR abs/1801.04334 (2018) - [i9]Yifan Peng, Anthony Rios, Ramakanth Kavuluru, Zhiyong Lu:
Chemical-protein relation extraction with ensembles of SVM, CNN, and RNN models. CoRR abs/1802.01255 (2018) - [i8]Xiaoran Wang, Yifan Peng, Benwen Zhang:
Comment Generation for Source Code: State of the Art, Challenges and Opportunities. CoRR abs/1802.02971 (2018) - [i7]Qingyu Chen, Yifan Peng, Zhiyong Lu:
BioSentVec: creating sentence embeddings for biomedical texts. CoRR abs/1810.09302 (2018) - [i6]Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu:
ML-Net: multi-label classification of biomedical texts with deep neural networks. CoRR abs/1811.05475 (2018) - [i5]Yifan Peng, Shazia Dharssi, Qingyu Chen, Tiarnan D. Keenan, Elvira Agrón, Wai T. Wong, Emily Y. Chew, Zhiyong Lu:
DeepSeeNet: A deep learning model for automated classification of patient-based age-related macular degeneration severity from color fundus photographs. CoRR abs/1811.07492 (2018) - [i4]Qingyu Chen, Yifan Peng, Tiarnan D. Keenan, Shazia Dharssi, Elvira Agrón, Wai T. Wong, Emily Y. Chew, Zhiyong Lu:
A multi-task deep learning model for the classification of Age-related Macular Degeneration. CoRR abs/1812.00422 (2018) - 2017
- [j11]Yifan Peng, Xiong Dun, Qilin Sun, Wolfgang Heidrich:
Mix-and-match holography. ACM Trans. Graph. 36(6): 191:1-191:12 (2017) - [c11]Yifan Peng, Xiaosong Wang, Le Lu, Mohammadhadi Bagheri, Ronald M. Summers, Zhiyong Lu:
Text Mining Radiology Reports for Deep Learning Radiology Images. AMIA 2017 - [c10]Yifan Peng, Zhiyong Lu:
Deep learning for extracting protein-protein interactions from biomedical literature. BioNLP 2017: 29-38 - [c9]Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Sun Kim, Chih-Hsuan Wei, Yifan Peng, Donald C. Comeau, Zhiyong Lu:
BioCreative VI Precision Medicine Track: creating a training corpus for mining protein-protein interactions affected by mutations. BioNLP 2017: 171-175 - [c8]Xiaosong Wang, Yifan Peng, Le Lu, Zhiyong Lu, Mohammadhadi Bagheri, Ronald M. Summers:
ChestX-Ray8: Hospital-Scale Chest X-Ray Database and Benchmarks on Weakly-Supervised Classification and Localization of Common Thorax Diseases. CVPR 2017: 3462-3471 - [c7]Tiancheng Sun, Yifan Peng, Wolfgang Heidrich:
Revisiting Cross-Channel Information Transfer for Chromatic Aberration Correction. ICCV 2017: 3268-3276 - [i3]Xiaosong Wang, Yifan Peng, Le Lu, Zhiyong Lu, Mohammadhadi Bagheri, Ronald M. Summers:
ChestX-ray8: Hospital-scale Chest X-ray Database and Benchmarks on Weakly-Supervised Classification and Localization of Common Thorax Diseases. CoRR abs/1705.02315 (2017) - [i2]Yifan Peng, Zhiyong Lu:
Deep learning for extracting protein-protein interactions from biomedical literature. CoRR abs/1706.01556 (2017) - [i1]Yifan Peng, Xiaosong Wang, Le Lu, Mohammadhadi Bagheri, Ronald M. Summers, Zhiyong Lu:
NegBio: a high-performance tool for negation and uncertainty detection in radiology reports. CoRR abs/1712.05898 (2017) - 2016
- [j10]Sun Kim, Rezarta Islamaj Dogan, Andrew Chatr-aryamontri, Christie S. Chang, Rose Oughtred, Jennifer M. Rust, Riza Batista-Navarro, Jacob Carter, Sophia Ananiadou, Sérgio Matos, André Santos, David Campos, José Luís Oliveira, Onkar Singh, Jitendra Jonnagaddala, Hong-Jie Dai, Emily Chia-Yu Su, Yung-Chun Chang, Yu-Chen Su, Chun-Han Chu, Chien Chin Chen, Wen-Lian Hsu, Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker, Ferhat Aydin, Zehra Melce Hüsünbeyi, Arzucan Özgür, Soo-Yong Shin, Dongseop Kwon, Kara Dolinski, Mike Tyers, W. John Wilbur, Donald C. Comeau:
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. Database J. Biol. Databases Curation 2016 (2016) - [j9]Yifan Peng, Cecilia N. Arighi, Cathy H. Wu, K. Vijay-Shanker:
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph. Database J. Biol. Databases Curation 2016 (2016) - [j8]Chih-Hsuan Wei, Yifan Peng, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Jiao Li, Thomas C. Wiegers, Zhiyong Lu:
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task. Database J. Biol. Databases Curation 2016 (2016) - [j7]Yifan Peng, Chih-Hsuan Wei, Zhiyong Lu:
Improving chemical disease relation extraction with rich features and weakly labeled data. J. Cheminformatics 8(1): 53:1-53:12 (2016) - [j6]Yifan Peng, Qiang Fu, Felix Heide, Wolfgang Heidrich:
The diffractive achromat full spectrum computational imaging with diffractive optics. ACM Trans. Graph. 35(4): 31:1-31:11 (2016) - [c6]Yifan Peng, Qiang Fu, Felix Heide, Wolfgang Heidrich:
The diffractive achromat full spectrum computational imaging with diffractive optics. SIGGRAPH ASIA Virtual Reality meets Physical Reality 2016: 4:1-4:2 - [c5]Chen Su, Yifan Peng, Qing Zhong, Haifeng Li, Rui Wang, Wolfgang Heidrich, Xu Liu:
Towards VR and AR: 360° light field display with mid-air interaction. SIGGRAPH ASIA Emerging Technologies 2016: 5:1-5:2 - [c4]Chen Su, Yifan Peng, Qing Zhong, Haifeng Li, Rui Wang, Wolfgang Heidrich, Xu Liu:
Towards VR and AR enhancement: light field display with mid-air interaction. SIGGRAPH ASIA Virtual Reality meets Physical Reality 2016: 7:1-7:2 - 2015
- [j5]Gang Li, Karen E. Ross, Cecilia N. Arighi, Yifan Peng, Cathy H. Wu, K. Vijay-Shanker:
miRTex: A Text Mining System for miRNA-Gene Relation Extraction. PLoS Comput. Biol. 11(9) (2015) - [c3]Yifan Peng, Samir Gupta, Cathy H. Wu, K. Vijay-Shanker:
An extended dependency graph for relation extraction in biomedical texts. BioNLP@IJCNLP 2015: 21-30 - 2014
- [j4]Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur:
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014) - [j3]Yifan Peng, Catalina O. Tudor, Manabu Torii, Cathy H. Wu, K. Vijay-Shanker:
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system. Database J. Biol. Databases Curation 2014 (2014) - [j2]Yifan Peng, Manabu Torii, Cathy H. Wu, K. Vijay-Shanker:
A Generalizable NLP Framework for Fast Development of Pattern-based Biomedical Relation Extraction Systems. BMC Bioinform. 15: 285 (2014) - 2013
- [j1]Donald C. Comeau, Rezarta Islamaj Dogan, Paolo Ciccarese, Kevin Bretonnel Cohen, Martin Krallinger, Florian Leitner, Zhiyong Lu, Yifan Peng, Fabio Rinaldi, Manabu Torii, Alfonso Valencia, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur:
BioC: a minimalist approach to interoperability for biomedical text processing. Database J. Biol. Databases Curation 2013 (2013) - [c2]Kiwon Yun, Yifan Peng, Dimitris Samaras, Gregory J. Zelinsky, Tamara L. Berg:
Studying Relationships between Human Gaze, Description, and Computer Vision. CVPR 2013: 739-746 - 2012
- [c1]Yifan Peng, Catalina O. Tudor, Manabu Torii, Cathy H. Wu, K. Vijay-Shanker:
iSimp: A sentence simplification system for biomedicail text. BIBM 2012: 1-6
Coauthor Index
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