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Desi Shang
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2020 – today
- 2023
- [j10]Kunpeng Luo, Zhipeng Qian, Yanan Jiang
, Dongxu Lv, Kaibin Zhu, Jing Shao, Ying Hu, Chengqian Lv, Qianqian Huang, Yang Gao, Shizhu Jin, Desi Shang
:
Characterization of the metabolic alteration-modulated tumor microenvironment mediated by TP53 mutation and hypoxia. Comput. Biol. Medicine 163: 107078 (2023) - [i1]Jie Hu, Xiaozhi Zhang, Desi Shang, Lijun Ouyang, Yue Li, Dongping Xiong:
EGTSyn: Edge-based Graph Transformer for Anti-Cancer Drug Combination Synergy Prediction. CoRR abs/2303.10312 (2023) - 2022
- [j9]Yongsan Yang, Fengcui Qian, Xuecang Li, Yanyu Li, Liwei Zhou, Qiuyu Wang, Xinyuan Zhou, Jian Zhang, Chao Song, Zhengmin Yu, Ting Cui, Chenchen Feng, Jiang Zhu, Desi Shang
, Jiaqi Liu, Mengfei Sun, Yuexin Zhang, Huifang Tang, Chunquan Li
:
GREAP: a comprehensive enrichment analysis software for human genomic regions. Briefings Bioinform. 23(5) (2022) - [j8]Yuexin Zhang, Chao Song, Yimeng Zhang, Yuezhu Wang, Chenchen Feng, Jiaxin Chen, Ling Wei, Qi Pan, Desi Shang
, Yanbing Zhu, Jiang Zhu, Shuangsang Fang, Jun Zhao, Yongsan Yang, Xilong Zhao, Xiaozheng Xu, Qiuyu Wang, Jincheng Guo
, Chunquan Li
:
TcoFBase: a comprehensive database for decoding the regulatory transcription co-factors in human and mouse. Nucleic Acids Res. 50(D1): 391-412 (2022) - 2020
- [j7]Yanjun Xu
, Tan Wu, Feng Li, Qun Dong, Jingwen Wang, Desi Shang
, Yingqi Xu
, Chunlong Zhang, Yiying Dou, Congxue Hu, Haixiu Yang, Xuan Zheng, Yunpeng Zhang, Lihua Wang, Xia Li
:
Identification and comprehensive characterization of lncRNAs with copy number variations and their driving transcriptional perturbed subpathways reveal functional significance for cancer. Briefings Bioinform. 21(6): 2153-2166 (2020) - [j6]Qun Dong, Feng Li, Yanjun Xu
, Jing Xiao, Yingqi Xu
, Desi Shang
, Chunlong Zhang, Haixiu Yang, Zihan Tian, Kai Mi, Xia Li
, Yunpeng Zhang:
RNAactDrug: a comprehensive database of RNAs associated with drug sensitivity from multi-omics data. Briefings Bioinform. 21(6): 2167-2174 (2020)
2010 – 2019
- 2017
- [j5]Yanjun Xu
, Haixiu Yang, Tan Wu, Qun Dong, Zeguo Sun, Desi Shang
, Feng Li, Yingqi Xu
, Fei Su, Siyao Liu, Yunpeng Zhang, Xia Li
:
BioM2MetDisease: a manually curated database for associations between microRNAs, metabolites, small molecules and metabolic diseases. Database J. Biol. Databases Curation 2017: bax037 (2017) - 2015
- [j4]Jian Zhang, Yan Wang, Desi Shang
, Fulong Yu
, Wei Liu, Yan Zhang, Chenchen Feng, Qiuyu Wang, Yanjun Xu, Yuejuan Liu, Xuefeng Bai, Xuecang Li, Chunquan Li
:
Characterizing and optimizing human anticancer drug targets based on topological properties in the context of biological pathways. J. Biomed. Informatics 54: 132-140 (2015) - 2014
- [j3]Jing Li, Chunquan Li
, Junwei Han
, Chunlong Zhang, Desi Shang
, Qianlan Yao
, Yunpeng Zhang, Yanjun Xu, Wei Liu, Meng Zhou
, Haixiu Yang, Fei Su, Xia Li:
The detection of risk pathways, regulated by miRNAs, via the integration of sample-matched miRNA-mRNA profiles and pathway structure. J. Biomed. Informatics 49: 187-197 (2014) - 2013
- [j2]Wei Liu, Chunquan Li
, Yanjun Xu, Haixiu Yang, Qianlan Yao
, Junwei Han
, Desi Shang
, Chunlong Zhang, Fei Su, Xiaoxi Li, Yun Xiao, Fan Zhang, Meng Dai, Xia Li:
Topologically inferring risk-active pathways toward precise cancer classification by directed random walk. Bioinform. 29(17): 2169-2177 (2013) - [j1]Ke-ning Li, Zi-hui Li, Ning Zhao
, Yaoqun Xu, Yongjing Liu, Yuanshuai Zhou, Desi Shang
, Fujun Qiu, Rui Zhang, Zhi-qiang Chang, Yan Xu:
Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer. BMC Syst. Biol. 7: 122 (2013)
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