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Carlos Ortiz-de-Solorzano
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2020 – today
- 2023
- [j18]Daniel Jiménez Sánchez
, Álvaro López-Janeiro
, María Villalba-Esparza, Mikel Ariz
, Ece Kadioglu, Ivan Masetto, Virginie Goubert, Maria D. Lozano, Ignacio Melero
, David Hardisson
, Carlos Ortiz-de-Solórzano
, Carlos E. de Andrea
:
Weakly supervised deep learning to predict recurrence in low-grade endometrial cancer from multiplexed immunofluorescence images. npj Digit. Medicine 6 (2023) - [j17]Daniel Jiménez Sánchez
, Mikel Ariz
, Carlos E. de Andrea, Carlos Ortiz-de-Solorzano
:
Synplex: In Silico Modeling of the Tumor Microenvironment From Multiplex Images. IEEE Trans. Medical Imaging 42(10): 3048-3058 (2023) - 2022
- [j16]Daniel Jiménez Sánchez, Mikel Ariz, José Mário Morgado, Iván Cortés-Domínguez, Carlos Ortiz-de-Solórzano:
Corrigendum to: NMF-RI: blind spectral unmixing of highly mixed multispectral flow and image cytometry data. Bioinform. 38(6): 1779 (2022) - [j15]Daniel Jiménez Sánchez
, Mikel Ariz, Hang Chang, Xavier Matias-Guiu, Carlos E. de Andrea, Carlos Ortiz-de-Solórzano
:
NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images. Medical Image Anal. 78: 102384 (2022) - [d2]Carlos Castilla, Martin Maska, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano
:
Datasets used in "3-D quantification of filopodia in motile cancer cells" IEEE Transactions on Medical Imaging 38(3), 862-872 (2019). IEEE DataPort, 2022 - [i3]Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali
, Anubha Gupta
, Jan Kybic, J. Alison Noble, Carlos Ortiz-de-Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano
, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge
, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias P. Heinrich, Nicholas Heller
, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett A. Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne L. Martel, et al.:
Biomedical image analysis competitions: The state of current participation practice. CoRR abs/2212.08568 (2022) - 2021
- [c23]Daniel Jiménez Sánchez
, Mikel Ariz, Carlos Ortiz-de-Solórzano:
Synplex: a synthetic simulator of highly multiplexed histological images. BHI 2021: 1-4 - [i2]Daniel Jiménez Sánchez, Mikel Ariz, Carlos Ortiz-de-Solórzano:
Synplex: A synthetic simulator of highly multiplexed histological images. CoRR abs/2103.04617 (2021) - [i1]Daniel Jiménez Sánchez, Mikel Ariz, Hang Chang, Xavier Matias-Guiu, Carlos E. de Andrea, Carlos Ortiz-de-Solórzano:
NaroNet: Discovery of tumor microenvironment elements from highly multiplexed images. CoRR abs/2103.05385 (2021) - 2020
- [j14]Daniel Jimenez-Carretero, Mikel Ariz
, José Mário T. Morgado, Iván Cortés-Domínguez
, Carlos Ortiz-de-Solórzano
:
NMF-RI: blind spectral unmixing of highly mixed multispectral flow and image cytometry data. Bioinform. 36(5): 1590-1598 (2020) - [c22]Daniel Jiménez Sánchez
, Mikel Ariz
, Carlos Ortiz-de-Solórzano:
Unsupervised Learning of Contextual Information in Multiplex Immunofluorescence Tissue Cytometry. ISBI 2020: 1275-1279 - [d1]María Anguiano, Xabier Morales, Carlos Castilla, Alejandro Rodríguez Peña, Cristina Ederra, Martin Martinez, Mikel Ariz, Maider Esparza, Hippolyte Amaveda, Mario Mora, Nieves Movilla, José Manuel García Aznar, Iván Cortés-Domínguez, Carlos Ortiz-de-Solorzano
:
Raw data used in the manuscript "The use of mixed collagen-Matrigel matrices of increasing complexity recapitulates the biphasic role of cell adhesion in cancer cell migration: ECM sensing, remodeling and forces at the leading edge of cancer invasion". IEEE DataPort, 2020
2010 – 2019
- 2019
- [j13]Mikel Ariz
, Ricardo C. Abad, Gabriel Castellanos
, Martin Martinez
, Arrate Muñoz-Barrutia
, María A. Fernández-Seara
, Pau Pastor
, María A. Pastor
, Carlos Ortiz-de-Solorzano
:
Dynamic Atlas-Based Segmentation and Quantification of Neuromelanin-Rich Brainstem Structures in Parkinson Disease. IEEE Trans. Medical Imaging 38(3): 813-823 (2019) - [j12]Carlos Castilla, Martin Maska
, Dmitry V. Sorokin
, Erik Meijering
, Carlos Ortiz-de-Solorzano
:
3-D Quantification of Filopodia in Motile Cancer Cells. IEEE Trans. Medical Imaging 38(3): 862-872 (2019) - 2018
- [c21]Carlos Castilla, Martin Maska
, Dmitry V. Sorokin, Erik Meijering, Carlos Ortiz-de-Solorzano:
Segmentation of actin-stained 3D fluorescent cells with filopodial protrusions using convolutional neural networks. ISBI 2018: 413-417 - 2015
- [j11]Carlos Ortiz-de-Solorzano
, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek
:
Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling. IEEE Signal Process. Mag. 32(1): 20-29 (2015) - [c20]María Anguiano, Carlos Castilla, Martin Maska
, Cristina Ederra, Javier Fernández-Marqués, Rafael Peláez
, Ana Rouzaut
, Arrate Muñoz-Barrutia, Michal Kozubek
, Carlos Ortiz-de-Solorzano
:
Characterization of the role of collagen network structure and composition in cancer cell migration. EMBC 2015: 8139-8142 - [c19]Martin Maska
, Cristina Ederra, Javier Fernández-Marqués, Arrate Muñoz-Barrutia, Michal Kozubek
, Carlos Ortiz-de-Solorzano
:
Quantification of the 3D collagen network geometry in confocal reflection microscopy. ICIP 2015: 1791-1794 - [c18]Marc Puigvert, Gabriel Castellanos, Javier Uranga, Ricardo C. Abad, María A. Fernández-Seara
, Pau Pastor
, María A. Pastor
, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Atlas-based segmentation of brainstem regions in neuromelanin-sensitive magnetic resonance images. Medical Imaging: Computer-Aided Diagnosis 2015: 94140Y - [c17]Rina Dewi Rudyanto, Carlos Ortiz-de-Solórzano
, Arrate Muñoz-Barrutia:
Quantification of pulmonary vessel diameter in low-dose CT images. Medical Imaging: Computer-Aided Diagnosis 2015: 94142U - 2014
- [j10]Martin Maska
, Vladimír Ulman
, David Svoboda
, Pavel Matula, Petr Matula
, Cristina Ederra, Ainhoa Urbiola, Tomás España, Subramanian Venkatesan
, Deepak M. W. Balak
, Pavel Karas, Tereza Bolcková, Markéta Streitová, Craig Carthel, Stefano Coraluppi, Nathalie Harder
, Karl Rohr, Klas E. G. Magnusson, Joakim Jaldén
, Helen M. Blau, Oleh Dzyubachyk
, Pavel Krízek, Guy M. Hagen
, David Pastor-Escuredo
, Daniel Jimenez-Carretero
, María J. Ledesma-Carbayo
, Arrate Muñoz-Barrutia, Erik Meijering, Michal Kozubek
, Carlos Ortiz-de-Solorzano
:
A benchmark for comparison of cell tracking algorithms. Bioinform. 30(11): 1609-1617 (2014) - [j9]Thomas Pengo
, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
A Novel Automated Microscopy Platform for Multiresolution Multispectral Early Detection of Lung Cancer Cells in Bronchoalveolar Lavage Samples. IEEE Syst. J. 8(3): 985-994 (2014) - 2013
- [j8]Rina Dewi Rudyanto, Gorka Bastarrika, Gabriel de Biurrun
, Jackeline Agorreta
, Luis M. Montuenga
, Carlos Ortiz-de-Solorzano
, Arrate Muñoz-Barrutia:
Individual nodule tracking in micro-CT images of a longitudinal lung cancer mouse model. Medical Image Anal. 17(8): 1095-1105 (2013) - [j7]Martin Maska
, Ondrej Danek, Saray Garasa
, Ana Rouzaut
, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model. IEEE Trans. Medical Imaging 32(6): 995-1006 (2013) - [c16]Rina Dewi Rudyanto, Arrate Muñoz-Barrutia, Alejandro A. Díaz, James C. Ross, George R. Washko, Carlos Ortiz-de-Solorzano
, Raúl San José Estépar
:
Modeling airway probability. ISBI 2013: 378-381 - [c15]Martin Maska
, Xabier Morales
, Arrate Muñoz-Barrutia, Ana Rouzaut
, Carlos Ortiz-de-Solorzano
:
Automatic quantification of filopodia-based cell migration. ISBI 2013: 668-671 - [c14]Jirí Borovec
, Jan Kybic, Michael Busta, Carlos Ortiz-de-Solorzano
, Arrate Muñoz-Barrutia:
Registration of multiple stained histological sections. ISBI 2013: 1034-1037 - 2012
- [j6]Arrate Muñoz-Barrutia, Mario Ceresa
, Xabier Artaechevarria, Luis M. Montuenga
, Carlos Ortiz-de-Solorzano
:
Quantification of Lung Damage in an Elastase-Induced Mouse Model of Emphysema. Int. J. Biomed. Imaging 2012: 734734:1-734734:11 (2012) - [c13]Rina Dewi Rudyanto, Ainhoa Agirre, Carlos Ortiz-de-Solorzano
, Arrate Muñoz-Barrutia:
Individual nodule tracking in micro-CT images of a mouse model of lung cancer. ISBI 2012: 362-365 - [c12]Martin Maska
, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Fast tracking of fluorescent cells based on the Chan-Vese model. ISBI 2012: 1316-1319 - [c11]Mario Ceresa
, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Characterization of emphysema in low dose computed tomography images using maximum likelihood estimation of the scale exponent. ISBI 2012: 1447-1450 - [c10]Rina Dewi Rudyanto, Mario Ceresa
, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solórzano
:
Detecting airway remodeling in COPD and emphysema using low-dose CT imaging. Medical Imaging: Computer-Aided Diagnosis 2012: 83150S - 2010
- [j5]Arrate Muñoz-Barrutia, Xabier Artaechevarria, Carlos Ortiz-de-Solorzano
:
Spatially Variant Convolution With Scaled B-Splines. IEEE Trans. Image Process. 19(1): 11-24 (2010) - [c9]Mario Ceresa
, Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Automatic leakage detection and recovery for airway tree extraction in chest CT images. ISBI 2010: 568-571
2000 – 2009
- 2009
- [j4]Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Combination Strategies in Multi-Atlas Image Segmentation: Application to Brain MR Data. IEEE Trans. Medical Imaging 28(8): 1266-1277 (2009) - [c8]Martin Maska, Ondrej Danek, Carlos Ortiz-de-Solorzano
, Arrate Muñoz-Barrutia, Michal Kozubek
, Ignacio Fernández García:
A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms. SCIA 2009: 390-399 - [c7]Ondrej Danek, Pavel Matula, Carlos Ortiz-de-Solorzano
, Arrate Muñoz-Barrutia, Martin Maska
, Michal Kozubek
:
Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model. SCIA 2009: 410-419 - 2008
- [c6]Carlos Ortiz-de-Solorzano
, Thomas Pengo
, Miguel Galarraga, Arrate Muñoz-Barrutia:
Automation of the detection of lung cancer cells in minimal samples of bronchioalveolar lavage. ISBI 2008: 312-315 - [c5]Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solórzano
:
Efficient classifier generation and weighted voting for atlas-based segmentation: two small steps faster and closer to the combination oracle. Medical Imaging: Image Processing 2008: 69141W - 2007
- [c4]Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Restoration of Biomedical Images using Locally Adaptive B-Spline Smoothing. ICIP (2) 2007: 425-428 - [c3]Xabier Artaechevarria, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzano
:
Restoration of Micro-Ct Images Using Locally Adaptive B-Spline Smoothing. ISBI 2007: 800-803 - 2006
- [j3]U. Adiga, Ravi Malladi, Rodrigo Fernandez-Gonzalez
, Carlos Ortiz-de-Solorzano
:
High-throughput analysis of multispectral images of breast cancer tissue. IEEE Trans. Image Process. 15(8): 2259-2268 (2006) - [c2]Ignacio Arganda-Carreras
, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic:
Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. CVAMIA 2006: 85-95 - 2005
- [j2]Rodrigo Fernandez-Gonzalez
, Mary Helen Barcellos-Hoff, Carlos Ortiz-de-Solorzano
:
A Tool for the Quantitative Spatial Analysis of Complex Cellular Systems. IEEE Trans. Image Process. 14(9): 1300-1313 (2005) - 2000
- [j1]Alessandro Sarti, Carlos Ortiz-de-Solorzano
, Stephen J. Lockett, Ravi Malladi:
A geometric model for 3-D confocal image analysis. IEEE Trans. Biomed. Eng. 47(12): 1600-1609 (2000)
1990 – 1999
- 1998
- [c1]Alessandro Sarti, Carlos Ortiz-de-Solorzano, Stephen J. Lockett, Ravi Malladi:
A unified geometric model for 3D confocal image analysis in cytology. SIBGRAPI 1998: 69-76
Coauthor Index
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