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ORCIDJana Lipková
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2020 – today
- 2024
[i16]Jonas Weidner, Ivan Ezhov, Michal Balcerak, Marie-Christin Metz, Sergey Litvinov, Sebastian Kaltenbach, Leonhard F. Feiner, Laurin Lux, Florian Kofler, Jana Lipková, Jonas Latz, Daniel Rueckert, Bjoern H. Menze, Benedikt Wiestler:
A Learnable Prior Improves Inverse Tumor Growth Modeling. CoRR abs/2403.04500 (2024)- 2023
- [j7]Ivan Ezhov
, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin J. Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze:
Learn-Morph-Infer: A new way of solving the inverse problem for brain tumor modeling. Medical Image Anal. 83: 102672 (2023) - [j6]Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84: 102680 (2023) - 2022
- [j5]Ming Y. Lu, Richard J. Chen, Dehan Kong, Jana Lipková, Rajendra Singh, Drew F. K. Williamson, Tiffany Y. Chen, Faisal Mahmood:
Federated learning for computational pathology on gigapixel whole slide images. Medical Image Anal. 76: 102298 (2022) - [j4]Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Chantal Pellegrini, Marcel Kollovieh, Fernando Navarro, Hongwei Li, Marie Metz, Benedikt Wiestler, Bjoern H. Menze:
Geometry-Aware Neural Solver for Fast Bayesian Calibration of Brain Tumor Models. IEEE Trans. Medical Imaging 41(5): 1269-1278 (2022) - 2021
- [j3]Ming Y. Lu, Tiffany Y. Chen, Drew F. K. Williamson, Melissa Zhao, Maha Shady, Jana Lipková, Faisal Mahmood:
AI-based pathology predicts origins for cancers of unknown primary. Nat. 594(7861): 106-110 (2021) - [i15]Richard J. Chen, Ming Y. Lu, Drew F. K. Williamson, Tiffany Y. Chen, Jana Lipková, Muhammad Shaban, Maha Shady, Mane Williams, Bumjin Joo, Zahra Noor, Faisal Mahmood:
Pan-Cancer Integrative Histology-Genomic Analysis via Interpretable Multimodal Deep Learning. CoRR abs/2108.02278 (2021) - [i14]Suprosanna Shit, Ivan Ezhov, Leon Mächler, Abinav R., Jana Lipková, Johannes C. Paetzold, Florian Kofler, Marie Piraud, Bjoern H. Menze:
Semi-Implicit Neural Solver for Time-dependent Partial Differential Equations. CoRR abs/2109.01467 (2021) - [i13]Richard J. Chen, Tiffany Y. Chen, Jana Lipková, Judy J. Wang, Drew F. K. Williamson, Ming Y. Lu, Sharifa Sahai, Faisal Mahmood:
Algorithm Fairness in AI for Medicine and Healthcare. CoRR abs/2110.00603 (2021) - [i12]Ivan Ezhov, Kevin Scibilia, Katharina Franitza, Felix Steinbauer, Suprosanna Shit, Lucas Zimmer, Jana Lipková, Florian Kofler, Johannes C. Paetzold, Luca Canalini, Diana Waldmannstetter, Martin J. Menten, Marie Metz, Benedikt Wiestler, Bjoern H. Menze:
Learn-Morph-Infer: a new way of solving the inverse problem for brain tumor modeling. CoRR abs/2111.04090 (2021) - 2020
- [c3]Ahmad Bin Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze:
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. MIDL 2020: 655-668 - [i11]Ahmad Bin Qasim, Ivan Ezhov, Suprosanna Shit, Oliver Schoppe, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jana Lipková, Hongwei Li, Bjoern H. Menze:
Red-GAN: Attacking class imbalance via conditioned generation. Yet another medical imaging perspective. CoRR abs/2004.10734 (2020) - [i10]Ming Y. Lu, Melissa Zhao, Maha Shady, Jana Lipková, Tiffany Y. Chen, Drew F. K. Williamson, Faisal Mahmood:
Deep Learning-based Computational Pathology Predicts Origins for Cancers of Unknown Primary. CoRR abs/2006.13932 (2020) - [i9]Ivan Ezhov, Tudor Mot, Suprosanna Shit, Jana Lipková, Johannes C. Paetzold, Florian Kofler, Fernando Navarro, Marie Metz, Benedikt Wiestler, Björn H. Menze:
Real-time Bayesian personalization via a learnable brain tumor growth model. CoRR abs/2009.04240 (2020) - [i8]Ming Y. Lu, Dehan Kong, Jana Lipková, Richard J. Chen, Rajendra Singh, Drew F. K. Williamson, Tiffany Y. Chen, Faisal Mahmood:
Federated Learning for Computational Pathology on Gigapixel Whole Slide Images. CoRR abs/2009.10190 (2020)
2010 – 2019
- 2019
- [j2]Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze:
Personalized Radiotherapy Design for Glioblastoma: Integrating Mathematical Tumor Models, Multimodal Scans, and Bayesian Inference. IEEE Trans. Medical Imaging 38(8): 1875-1884 (2019) - [c2]Ivan Ezhov, Jana Lipková, Suprosanna Shit, Florian Kofler, Nora Collomb, Benjamin Lemasson, Emmanuel Luc Barbier, Bjoern H. Menze:
Neural Parameters Estimation for Brain Tumor Growth Modeling. MICCAI (2) 2019: 787-795 - [i7]Patrick Bilic, Patrick Ferdinand Christ, Eugene Vorontsov, Grzegorz Chlebus, Hao Chen, Qi Dou, Chi-Wing Fu, Xiao Han, Pheng-Ann Heng, Jürgen Hesser, Samuel Kadoury, Tomasz K. Konopczynski, Miao Le, Chunming Li, Xiaomeng Li, Jana Lipková, John S. Lowengrub, Hans Meine, Jan Hendrik Moltz, Chris Pal, Marie Piraud, Xiaojuan Qi, Jin Qi, Markus Rempfler, Karsten Roth, Andrea Schenk, Anjany Sekuboyina, Ping Zhou, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Felix Grün, Georgios Kaissis, Fabian Lohöfer, Rickmer Braren, Julian Holch, Felix Hofmann, Wieland H. Sommer, Volker Heinemann, Colin Jacobs, Gabriel Efrain Humpire Mamani, Bram van Ginneken, Gabriel Chartrand, An Tang, Michal Drozdzal, Avi Ben-Cohen, Eyal Klang, Michal Marianne Amitai, Eli Konen, Hayit Greenspan, Johan Moreau, Alexandre Hostettler, Luc Soler, Refael Vivanti, Adi Szeskin, Naama Lev-Cohain, Jacob Sosna, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). CoRR abs/1901.04056 (2019) - [i6]Ivan Ezhov, Jana Lipková, Suprosanna Shit, Florian Kofler, Nora Collomb, Benjamin Lemasson, Emmanuel Luc Barbier, Bjoern H. Menze:
Neural parameters estimation for brain tumor growth modeling. CoRR abs/1907.00973 (2019) - [i5]Suprosanna Shit, Abinav Ravi Venkatakrishnan, Ivan Ezhov, Jana Lipková, Marie Piraud, Bjoern H. Menze:
Implicit Neural Solver for Time-dependent Linear PDEs with Convergence Guarantee. CoRR abs/1910.03452 (2019) - 2018
- [i4]Jana Lipková, Panagiotis Angelikopoulos, Stephen Wu, Esther Alberts, Benedikt Wiestler, Christian Diehl, Christine Preibisch, Thomas Pyka, Stephanie Combs, Panagiotis E. Hadjidoukas, Koen Van Leemput, Petros Koumoutsakos, John S. Lowengrub, Bjoern H. Menze:
Personalized Radiotherapy Planning for Glioma Using Multimodal Bayesian Model Calibration. CoRR abs/1807.00499 (2018) - [i3]Spyridon Bakas, Mauricio Reyes, András Jakab, Stefan Bauer, Markus Rempfler, Alessandro Crimi, Russell Takeshi Shinohara, Christoph Berger, Sung Min Ha, Martin Rozycki, Marcel Prastawa, Esther Alberts, Jana Lipková, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Benedikt Wiestler, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Ujjwal Baid, Dongjin Kwon, Manu Agarwal, Mahbubul Alam, Alberto Albiol, Antonio Albiol, Alex Varghese, Tran Anh Tuan, Tal Arbel, Aaron Avery, Pranjal B., Subhashis Banerjee, Thomas Batchelder, Kayhan N. Batmanghelich, Enzo Battistella, Martin Bendszus, Eze Benson, José Bernal, George Biros, Mariano Cabezas, Siddhartha Chandra, Yi-Ju Chang, et al.:
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge. CoRR abs/1811.02629 (2018) - 2017
- [c1]Lina Xu, Giles Tetteh, Mona Mustafa, Jana Lipková, Yu Zhao, Marie Bieth, Patrick Ferdinand Christ, Marie Piraud, Bjoern H. Menze, Kuangyu Shi:
W-Net for Whole-Body Bone Lesion Detection on ^68 Ga-Pentixafor PET/CT Imaging of Multiple Myeloma Patients. CMMI/RAMBO/SWITCH@MICCAI 2017: 23-30 - [i2]Patrick Ferdinand Christ, Florian Ettlinger, Felix Grün, Mohamed Ezzeldin A. Elshaer, Jana Lipková, Sebastian Schlecht, Freba Ahmaddy, Sunil Tatavarty, Marc Bickel, Patrick Bilic, Markus Rempfler, Felix Hofmann, Melvin D'Anastasi, Seyed-Ahmad Ahmadi, Georgios Kaissis, Julian Holch, Wieland H. Sommer, Rickmer Braren, Volker Heinemann, Bjoern H. Menze:
Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks. CoRR abs/1702.05970 (2017) - [i1]Jana Lipková, Markus Rempfler, Patrick Ferdinand Christ, John S. Lowengrub, Bjoern H. Menze:
Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation. CoRR abs/1704.02348 (2017) - 2011
- [j1]Jana Lipková, Konstantinos C. Zygalakis, S. Jonathan Chapman, Radek Erban:
Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions. SIAM J. Appl. Math. 71(3): 714-730 (2011)
Coauthor Index
aka: Björn H. Menze
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