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ORCIDXu Shi 0003
Person information
- affiliation: Yale University, Department of Molecular Biophysics and BioChemistry, New Haven, CT, US
- affiliation: Virginia Polytechnic Institute and State University, Bradley Department of Electrical and Computer Engineering, Arlington, VA, USA
Other persons with the same name
- Xu Shi — disambiguation page
- Xu Shi 0001 — NTT Software Innovation Center, Tokyo, Japan
- Xu Shi 0002
![[0000-0002-1449-1846]](https://dblp.dagstuhl.de/img/orcid-mark.12x12.png "0000-0002-1449-1846")
— Tsinghua University, Department of Electronic Engineering, Beijing National Research Center for Information Science and Technology, Beijing, China (and 1 more)
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Journal Articles
- 2025
[j7]Xu Shi, Xiao Wang, Lu Jin, Leena Halakivi-Clarke, Robert Clarke, Andrew F. Neuwald, Jianhua Xuan:
Bayesian identification of differentially expressed isoforms using a novel joint model of RNA-seq data. PLoS Comput. Biol. 21(1): 1012750 (2025)- 2021
- [j6]Xu Shi, Andrew F. Neuwald, Xiao Wang, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles. Bioinform. 37(5): 650-658 (2021) - [j5]Xi Chen, Xu Shi, Andrew F. Neuwald, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach. BMC Bioinform. 22(1): 193 (2021) - 2018
- [j4]Xu Shi, Xiao Wang, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data. Bioinform. 34(1): 56-63 (2018) - 2017
- [j3]Xi Chen, Xu Shi, Leena Hilakivi-Clarke, Ayesha N. Shajahan-Haq, Robert Clarke, Jianhua Xuan:
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification. Bioinform. 33(2): 177-183 (2017) - 2015
- [j2]Xu Shi, Robert O. Barnes, Li Chen, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke, Yue Joseph Wang, Jianhua Xuan:
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method. Bioinform. 31(14): 2412-2414 (2015) - 2013
- [j1]Xu Shi, Jinghua Gu, Xi Chen, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks. BMC Syst. Biol. 7(S-5): S4 (2013)
Conference and Workshop Papers
- 2014
- [c3]Xi Chen, Xu Shi, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
Statistical Identification of Co-regulatory Gene Modules using Multiple ChIP-Seq Experiments. BIOINFORMATICS 2014: 109-116 - [c2]Xi Chen, Xu Shi, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan:
BSSV: Bayesian based somatic structural variation identification with whole genome DNA-seq data. EMBC 2014: 3937-3940 - 2013
- [c1]Xi Chen, Jianhua Xuan, Xu Shi, Ayesha N. Shajahan-Haq, Leena Hilakivi-Clarke, Robert Clarke:
A novel statistical approach to identify co-regulatory gene modules. BIBM 2013: 16-18
Coauthor Index
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