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Benli Chai
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2010 – 2019
- 2018
- [j7]Xiaole Yin
, Xiaotao Jiang
, Benli Chai, Liguan Li, Ying Yang, James R. Cole, James M. Tiedje, Tong Zhang:
ARGs-OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes. Bioinform. 34(13): 2263-2270 (2018) - 2016
- [j6]Ying Yang, Xiaotao Jiang
, Benli Chai, Liping Ma, Bing Li
, Anni Zhang, James R. Cole, James M. Tiedje, Tong Zhang:
ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database. Bioinform. 32(15): 2346-2351 (2016) - 2014
- [j5]James R. Cole, Qiong Wang, Jordan A. Fish, Benli Chai, Donna M. McGarrell, Yanni Sun
, C. Titus Brown
, Andrea Porras-Alfaro
, Cheryl R. Kuske, James M. Tiedje:
Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. 42(Database-Issue): 633-642 (2014)
2000 – 2009
- 2009
- [j4]James R. Cole, Qiong Wang, E. Cardenas, Jordan A. Fish, Benli Chai, Ryan J. Farris, A. S. Kulam-Syed-Mohideen, Donna M. McGarrell, Terry L. Marsh
, George M. Garrity
, James M. Tiedje:
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37(Database-Issue): 141-145 (2009) - 2007
- [j3]James R. Cole, Benli Chai, Ryan J. Farris, Qiong Wang, A. S. Kulam-Syed-Mohideen, Donna M. McGarrell, A. M. Bandela, E. Cardenas, George M. Garrity
, James M. Tiedje:
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res. 35(Database-Issue): 169-172 (2007) - 2005
- [j2]James R. Cole, Benli Chai, Ryan J. Farris, Qiong Wang, S. A. Kulam, Donna M. McGarrell, George M. Garrity
, James M. Tiedje:
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res. 33(Database-Issue): 294-296 (2005) - 2003
- [j1]James R. Cole, Benli Chai, Terry L. Marsh
, Ryan J. Farris, Qiong Wang, S. A. Kulam, S. Chandra, Donna M. McGarrell, Thomas M. Schmidt
, George M. Garrity
, James M. Tiedje:
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31(1): 442-443 (2003)
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