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Andre Lamurias
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2020 – today
- 2024
- [c16]Rodrigo Gonçalves, André Lamúrias:
Team NOVA LINCS @ BIOASQ12 MultiCardioNER Track: Entity Recognition with Additional Entity Types. CLEF (Working Notes) 2024: 130-137 - 2023
- [j14]Oliver S. Bak, Marcus D. Jensen, Frederik M. Trudslev
, Andreas Windfeld, Andre Lamurias
:
BinChill: A Metagenomic Binning Ensemble Method. IEEE Access 11: 49561-49577 (2023) - [j13]Muhammad Asif, Hugo F. M. C. Martiniano, Andre Lamurias
, Samina Kausar, Francisco M. Couto
:
DGH-GO: dissecting the genetic heterogeneity of complex diseases using gene ontology. BMC Bioinform. 24(1): 171 (2023) - [j12]Zekeriya Anil Guven
, Andre Lamurias:
Multilingual bi-encoder models for biomedical entity linking. Expert Syst. J. Knowl. Eng. 40(9) (2023) - [c15]Andre Lamurias
, Alessandro Tibo, Katja Hose, Mads Albertsen, Thomas Dyhre Nielsen:
Metagenomic Binning using Connectivity-constrained Variational Autoencoders. ICML 2023: 18471-18481 - 2022
- [j11]Andre Lamurias
, Mantas Sereika
, Mads Albertsen
, Katja Hose
, Thomas Dyhre Nielsen
:
Metagenomic binning with assembly graph embeddings. Bioinform. 38(19): 4481-4487 (2022) - [i6]Andre Lamurias, Alessandro Tibo, Katja Hose, Mads Albertsen, Thomas Dyhre Nielsen:
Graph Neural Networks for Microbial Genome Recovery. CoRR abs/2204.12270 (2022) - 2021
- [j10]Andre Lamurias
, Sofia Jesus, Vanessa Neveu
, Reza M. Salek
, Francisco M. Couto
:
Information Retrieval Using Machine Learning for Biomarker Curation in the Exposome-Explorer. Frontiers Res. Metrics Anal. 6: 689264 (2021) - [p1]Diana F. Sousa
, Andre Lamurias
, Francisco M. Couto
:
Using Neural Networks for Relation Extraction from Biomedical Literature. Artificial Neural Networks, 3rd Edition 2021: 289-305 - [i5]Rúben Cardoso, Afonso Mendes, Andre Lamurias:
Priberam Labs at the NTCIR-15 SHINRA2020-ML: Classification Task. CoRR abs/2105.05605 (2021) - 2020
- [j9]Andre Lamurias
, Diana F. Sousa
, Francisco M. Couto
:
Generating Biomedical Question Answering Corpora From Q&A Forums. IEEE Access 8: 161042-161051 (2020) - [j8]Diana F. Sousa
, Andre Lamurias
, Francisco M. Couto
:
A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing. Database J. Biol. Databases Curation 2020 (2020) - [j7]Pedro Ruas
, Andre Lamurias
, Francisco M. Couto
:
Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature. J. Cheminformatics 12(1): 57 (2020) - [c14]Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto
, Jenny Copara
, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) 2020 - [c13]André Neves, André Lamúrias, Francisco M. Couto
:
Extreme Multi-Label Classification applied to the Biomedical and Multilingual Panorama. CLEF (Working Notes) 2020 - [c12]Pedro Ruas, Andre Lamurias, Francisco M. Couto
:
LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE. CLEF (Working Notes) 2020 - [c11]André Neves, André Lamúrias, Francisco M. Couto
:
Biomedical Question Answering using Extreme Multi-Label Classification and Ontologies in the Multilingual Panorama. SIIRH@ECIR 2020 - [c10]Pedro Ruas, André Lamúrias, Francisco M. Couto
:
Towards a Multilingual Corpus for Named Entity Linking Evaluation in the Clinical Domain. SIIRH@ECIR 2020 - [c9]Márcia Barros
, Andre Lamurias
, Diana F. Sousa
, Pedro Ruas
, Francisco M. Couto:
COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities. NLP4COVID@EMNLP 2020 - [i4]Andre Lamurias, Diana F. Sousa, Francisco M. Couto:
Generating Scientific Question Answering Corpora from Q&A forums. CoRR abs/2002.02375 (2020)
2010 – 2019
- 2019
- [j6]Andre Lamurias
, Diana F. Sousa
, Luka A. Clarke
, Francisco M. Couto:
BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies. BMC Bioinform. 20(1): 10 (2019) - [j5]Andre Lamurias
, Pedro Ruas
, Francisco M. Couto:
PPR-SSM: personalized PageRank and semantic similarity measures for entity linking. BMC Bioinform. 20(1): 534:1-534:12 (2019) - [c8]Andre Lamurias
, Francisco M. Couto:
LasigeBioTM at MEDIQA 2019: Biomedical Question Answering using Bidirectional Transformers and Named Entity Recognition. BioNLP@ACL 2019: 523-527 - [c7]Diana F. Sousa
, Andre Lamurias
, Francisco M. Couto:
A Silver Standard Corpus of Human Phenotype-Gene Relations. NAACL-HLT (1) 2019: 1487-1492 - [r2]Andre Lamurias
, Francisco M. Couto:
Text Mining for Bioinformatics Using Biomedical Literature. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 602-611 - [r1]Francisco M. Couto, Andre Lamurias
:
Semantic Similarity Definition. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 870-876 - [i3]Diana F. Sousa
, Andre Lamurias, Francisco M. Couto:
A Silver Standard Corpus of Human Phenotype-Gene Relations. CoRR abs/1903.10728 (2019) - [i2]Diana F. Sousa, Andre Lamurias, Francisco M. Couto:
Using Neural Networks for Relation Extraction from Biomedical Literature. CoRR abs/1905.11391 (2019) - 2018
- [j4]Francisco M. Couto, Andre Lamurias
:
MER: a shell script and annotation server for minimal named entity recognition and linking. J. Cheminformatics 10(1): 58:1-58:10 (2018) - 2017
- [c6]Andre Lamurias
, Diana F. Sousa
, Sofia Pereira, Luka A. Clarke, Francisco M. Couto:
ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events. SemEval@ACL 2017: 1019-1023 - 2016
- [c5]Andre Lamurias, Miguel J. Rodrigues, Luka A. Clarke, Francisco M. Couto:
Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision. BioNLP (Shared Task) 2016: 88-92 - [c4]Márcia Barros
, Andre Lamurias, Gonçalo Figueiró, Marta Antunes, Joana Teixeira, Alexandre Pinheiro, Francisco M. Couto:
ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt. SemEval@NAACL-HLT 2016: 1263-1267 - [i1]Miguel J. Rodrigues, Miguel Falé, Andre Lamurias, Francisco M. Couto:
WS4A: a Biomedical Question and Answering System based on public Web Services and Ontologies. CoRR abs/1609.08492 (2016) - 2015
- [j3]Andre Lamurias
, João D. Ferreira
, Francisco M. Couto:
Improving chemical entity recognition through h-index based semantic similarity. J. Cheminformatics 7(S-1): S13 (2015) - [j2]Martin Krallinger
, Obdulia Rabal
, Florian Leitner, Miguel Vazquez
, David Salgado
, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M. Lowe, Roger A. Sayle, Riza Theresa Batista-Navarro
, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos
, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V. Ramanan, P. Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A. Akhondi, Jan A. Kors, Shuo Xu
, Xin An, Utpal Kumar Sikdar, Asif Ekbal
, Masaharu Yoshioka
, Thaer M. Dieb, Miji Choi, Karin Verspoor
, Madian Khabsa, C. Lee Giles
, Hongfang Liu, Ravikumar Komandur Elayavilli, Andre Lamurias
, Francisco M. Couto, Hong-Jie Dai, Richard Tzong-Han Tsai
, Caglar Ata, Tolga Can
, Anabel Usie
, Rui Alves
, Isabel Segura-Bedmar
, Paloma Martínez, Julen Oyarzabal
, Alfonso Valencia
:
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics 7(S-1): S2 (2015) - [c3]Andre Lamurias, Vasco Pedro, Luka A. Clarke, Francisco M. Couto:
Annotating biomedical ontology terms in electronic health records using crowd-sourcing. ICBO 2015 - [c2]Andre Lamurias
, Luka A. Clarke
, Francisco M. Couto:
IICE: Web Tool for Automatic Identification of Chemical Entities and Interactions. ECML/PKDD (3) 2015: 285-288 - 2014
- [j1]Andre Lamurias
, João D. Ferreira
, Francisco M. Couto:
Identifying interactions between chemical entities in biomedical text. J. Integr. Bioinform. 11(3) (2014) - [c1]Andre Lamurias
, João D. Ferreira
, Francisco M. Couto:
Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical Features. PACBB 2014: 253-260
Coauthor Index
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last updated on 2024-08-15 23:44 CEST by the dblp team
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