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2020 – today
- 2021
[j6]Jieming Chen, Shravan Madireddi
, Deepti Nagarkar, Maciej Migdal, Jason A. Vander Heiden, Diana Chang, Kiran Mukhyala, Suresh Selvaraj, Edward E. Kadel, Matthew J. Brauer, Sanjeev Mariathasan, Julie Hunkapiller, Suchit Jhunjhunwala, Matthew L. Albert, Christian Hammer:
In silico tools for accurate HLA and KIR inference from clinical sequencing data empower immunogenetics on individual-patient and population scales. Briefings Bioinform. 22(3) (2021)- 2020
- [j5]Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell:
The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons. Frontiers Big Data 3: 22 (2020)
2010 – 2019
- 2017
- [j4]Christopher R. Bolen, Florian Rubelt, Jason A. Vander Heiden, Mark M. Davis:
The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires. BMC Bioinform. 18(1): 155:1-155:8 (2017) - 2016
- [j3]Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John M. Fonner, Namita T. Gupta, Uri Hershberg, Nishanth Marthandan, Aaron M. Rosenfeld, William Rounds, Florian Rubelt, Walter Scarborough, Jamie K. Scott, Mohamed Uduman, Jason A. Vander Heiden, Richard H. Scheuermann, Nancy Monson, Steven H. Kleinstein, Lindsay G. Cowell:
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements. BMC Bioinform. 17(S-13): 333 (2016) - [c1]Trevor Cohen, Dominic Widdows, Jason A. Vander Heiden, Namita T. Gupta, Steven H. Kleinstein:
Graded Vector Representations of Immunoglobulins Produced in Response to West Nile Virus. QI 2016: 135-148 - 2015
- [j2]Namita T. Gupta, Jason A. Vander Heiden, Mohamed Uduman, Daniel Gadala-Maria, Gur Yaari, Steven H. Kleinstein:
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data. Bioinform. 31(20): 3356-3358 (2015) - 2014
- [j1]Jason A. Vander Heiden, Gur Yaari, Mohamed Uduman, Joel N. H. Stern, Kevin C. O'Connor, David A. Hafler, Francois Vigneault, Steven H. Kleinstein:
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires. Bioinform. 30(13): 1930-1932 (2014)
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