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2020 – today
- 2023
[c3]Sajal Dash, Mohammad Alaul Haque Monil
, Junqi Yin, Ramu Anandakrishnan, Feiyi Wang:
Distributing Simplex-Shaped Nested for-Loops to Identify Carcinogenic Gene Combinations. IPDPS 2023: 974-984- 2021
- [c2]Sajal Dash, Qais Al-Hajri, Wu-chun Feng, Harold R. Garner, Ramu Anandakrishnan:
Scaling Out a Combinatorial Algorithm for Discovering Carcinogenic Gene Combinations to Thousands of GPUs. IPDPS 2021: 837-846
2010 – 2019
- 2019
- [j5]Nicholas Kinney, Kyle Titus-Glover, Jonathan D. Wren, Robin T. Varghese, Pawel Michalak, Han Liao, Ramu Anandakrishnan, Arichanah Pulenthiran, Lin Kang, Harold R. Garner:
CAGm: a repository of germline microsatellite variations in the 1000 genomes project. Nucleic Acids Res. 47(Database-Issue): D39-D45 (2019) - [j4]Ramu Anandakrishnan, Robin T. Varghese, Nicholas Kinney, Harold R. Garner:
Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations. PLoS Comput. Biol. 15(3) (2019) - 2016
- [c1]Ramu Anandakrishnan, Mayank Daga, Alexey Onufriev, Wu-chun Feng:
Multiscale Approximation with Graphical Processing Units for Multiplicative Speedup in Molecular Dynamics. BCB 2016: 453-462 - 2012
- [j3]Ramu Anandakrishnan, Boris Aguilar, Alexey Onufriev:
H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations. Nucleic Acids Res. 40(Web-Server-Issue): 537-541 (2012) - 2010
- [j2]Ramu Anandakrishnan, Alexey Onufriev:
An N log N approximation based on the natural organization of biomolecules for speeding up the computation of long range interactions. J. Comput. Chem. 31(4): 691-706 (2010)
2000 – 2009
- 2008
- [j1]Ramu Anandakrishnan, Alexey Onufriev:
Analysis of Basic Clustering Algorithms for Numerical Estimation of Statistical Averages in Biomolecules. J. Comput. Biol. 15(2): 165-184 (2008)
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