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2020 – today
- 2023
[j9]Adrien Rougny
, Irina Balaur, Augustin Luna, Alexander Mazein:
StonPy: a tool to parse and query collections of SBGN maps in a graph database. Bioinform. 39(3) (2023)- [j8]Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski:
A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance. Frontiers Bioinform. 3 (2023) - 2021
- [j7]Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider:
Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling. Briefings Bioinform. 22(5) (2021) - [j6]Adrien Rougny, Vasundra Touré, John Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly A. Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein:
SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks. Briefings Bioinform. 22(5) (2021) - [j5]Adrien Rougny, Loïc Paulevé, Michèle Teboul, Franck Delaunay:
A detailed map of coupled circadian clock and cell cycle with qualitative dynamics validation. BMC Bioinform. 22(1): 240 (2021) - 2020
- [j4]Frank T. Bergmann, Tobias Czauderna, Ugur Dogrusoz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov, Augustin Luna:
Systems biology graphical notation markup language (SBGNML) version 0.3. J. Integr. Bioinform. 17(2-3) (2020)
2010 – 2019
- 2019
- [j3]Adrien Rougny:
sbgntikz - a TikZ library to draw SBGN maps. Bioinform. 35(21): 4499-4500 (2019) - [j2]Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019) - 2016
- [b1]Adrien Rougny:
Méthodes qualitatives pour la construction et l'analyse des réseaux moléculaires SBGN. (Qualitative methods for the construction and the analysis of SBGN molecular networks). University of Paris-Saclay, France, 2016 - [j1]Adrien Rougny, Christine Froidevaux, Laurence Calzone, Loïc Paulevé:
Qualitative dynamics semantics for SBGN process description. BMC Syst. Biol. 10: 42 (2016) - 2015
- [c2]Adrien Rougny, Yoshitaka Yamamoto, Hidetomo Nabeshima, Gauvain Bourgne, Anne Poupon, Katsumi Inoue, Christine Froidevaux:
Completing signaling networks by abductive reasoning with perturbation experiments. ILP (Late Breaking Papers) 2015: 95-100 - 2014
- [c1]Yoshitaka Yamamoto, Adrien Rougny, Hidetomo Nabeshima, Katsumi Inoue, Hisao Moriya, Christine Froidevaux, Koji Iwanuma:
Completing SBGN-AF Networks by Logic-Based Hypothesis Finding. FMMB 2014: 165-179
Coauthor Index
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