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ORCIDMaciej Rybinski
Person information
- affiliation: CSIRO/Data61, Sydney, NSW, Australia
- affiliation (PhD 2017): University of Málaga, Spain
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Journal Articles
- 2024
[j11]Necva Bölücü
, Maciej Rybinski, Xiang Dai, Stephen Wan:
An adaptive approach to noisy annotations in scientific information extraction. Inf. Process. Manag. 61(6): 103857 (2024)- [j10]Maciej Rybinski, Wojciech Kusa, Sarvnaz Karimi, Allan Hanbury:
Learning to match patients to clinical trials using large language models. J. Biomed. Informatics 159: 104734 (2024) - 2023
- [j9]Jorge Rodríguez-Revello, Cristóbal Barba-González, Maciej Rybinski, Ismael Navas-Delgado:
KNIT: Ontology reusability through knowledge graph exploration. Expert Syst. Appl. 228: 120239 (2023) - 2022
- [j8]Vincent Nguyen, Maciej Rybinski, Sarvnaz Karimi, Zhenchang Xing:
Search like an expert: Reducing expertise disparity using a hybrid neural index for COVID-19 queries. J. Biomed. Informatics 127: 104005 (2022) - 2020
- [j7]Maciej Rybinski, Sarvnaz Karimi, Vincent Nguyen, Cécile Paris:
A2A: a platform for research in biomedical literature search. BMC Bioinform. 21-S(19): 572 (2020) - [j6]Maciej Rybinski, Jerry Xu, Sarvnaz Karimi:
Clinical trial search: Using biomedical language understanding models for re-ranking. J. Biomed. Informatics 109: 103530 (2020) - 2019
- [j5]Ismael Navas-Delgado, José García-Nieto, Esteban López-Camacho, Maciej Rybinski, Rocio Lavado-Valenzuela, Miguel Ángel Berciano Guerrero, José Francisco Aldana-Montes:
VIGLA-M: visual gene expression data analytics. BMC Bioinform. 20-S(4): 150:1-150:11 (2019) - 2017
- [j4]Maciej Rybinski, José Francisco Aldana-Montes:
DomESA: a novel approach for extending domain-oriented lexical relatedness calculations with domain-specific semantics. J. Intell. Inf. Syst. 49(3): 315-331 (2017) - 2016
- [j3]Maciej Rybinski, José Francisco Aldana-Montes:
tESA: a distributional measure for calculating semantic relatedness. J. Biomed. Semant. 7: 67:1-67:14 (2016) - 2015
- [j2]Ismael Navas-Delgado, María Jesús García-Godoy, Esteban López-Camacho, Maciej Rybinski, Armando Reyes-Palomares, Miguel Angel Medina, José Francisco Aldana-Montes:
kpath: integration of metabolic pathway linked data. Database J. Biol. Databases Curation 2015 (2015) - 2014
- [j1]Maciej Rybinski, José Francisco Aldana-Montes:
Calculating semantic relatedness for biomedical use in a knowledge-poor environment. BMC Bioinform. 15(S-14): S2 (2014)
Conference and Workshop Papers
- 2025
- [c24]Yidong Gan, Maciej Rybinski, Ben Hachey, Jonathan K. Kummerfeld:
Aligning AI Research with the Needs of Clinical Coding Workflows: Eight Recommendations Based on US Data Analysis and Critical Review. ACL (1) 2025: 909-922 - 2024
- [c23]Jorge Rodríguez-Revello, Cristóbal Barba-González, Maciej Rybinski, Ismael Navas-Delgado:
YOKO ONtO: You only KNIT One Ontology. KGSWC 2024: 199-211 - 2023
- [c22]Mong Yuan Sim, Xiang Dai, Maciej Rybinski, Sarvnaz Karimi:
CSIRO Data61 Team at BioLaySumm Task 1: Lay Summarisation of Biomedical Research Articles Using Generative Models. BioNLP@ACL 2023: 629-635 - [c21]Maciej Rybinski, Vincent Nguyen, Sarvnaz Karimi:
A Self-Learning Resource-Efficient Re-Ranking Method for Clinical Trials Search. CIKM 2023: 4249-4253 - [c20]Necva Bölücü, Maciej Rybinski, Stephen Wan:
impact of sample selection on in-context learning for entity extraction from scientific writing. EMNLP (Findings) 2023: 5090-5107 - [c19]Vincent Nguyen, Sarvnaz Karimi, Maciej Rybinski, Zhenchang Xing:
MedRedQA for Medical Consumer Question Answering: Dataset, Tasks, and Neural Baselines. IJCNLP (1) 2023: 629-648 - [c18]Maciej Rybinski, Stephen Wan, Sarvnaz Karimi, Cécile Paris, Brian Jin, Neil I. Huth, Peter J. Thorburn, Dean P. Holzworth:
SciHarvester: Searching Scientific Documents for Numerical Values. SIGIR 2023: 3135-3139 - [c17]Maciej Rybinski, Sarvnaz Karimi:
Matching of Patient Questionnaires to Clinical Trials with Large Language Models. TREC 2023 - 2022
- [c16]Aleney Khoo, Maciej Rybinski, Sarvnaz Karimi, Adam G. Dunn:
The Role of Context in Vaccine Stance Prediction for Twitter Users. ALTA 2022: 16-21 - [c15]Maciej Rybinski, Liam Watts, Sarvnaz Karimi:
A2A-API: A Prototype for Biomedical Information Retrieval Research and Benchmarking. SIGIR 2022: 3318-3322 - [c14]Vincent Nguyen, Maciej Rybinski, Sarvnaz Karimi:
Matching a Patient from An Admission Note to Clinical Trials: Experiments with Query Generation and Neural-Ranking. TREC 2022 - 2021
- [c13]Rhys Biddle, Maciek Rybinski, Qian Li, Cécile Paris, Guandong Xu:
Harnessing Privileged Information for Hyperbole Detection. ALTA 2021: 58-67 - [c12]Vincent Nguyen, Sarvnaz Karimi, Maciej Rybinski, Zhenchang Xing:
Cross-Domain Language Modeling: An Empirical Investigation. ALTA 2021: 192-200 - [c11]Maciej Rybinski, Sarvnaz Karimi:
Will Sorafenib Help?: Treatment-aware Reranking in Precision Medicine Search. CIKM 2021: 3403-3407 - [c10]Xiang Dai, Maciej Rybinski, Sarvnaz Karimi:
SearchEHR: A Family History Search System for Clinical Decision Support. CIKM 2021: 4701-4705 - [c9]Diego Mollá, Urvashi Khanna, Dima Galat, Vincent Nguyen, Maciej Rybinski:
Query-Focused Extractive Summarisation for Finding Ideal Answers to Biomedical and COVID-19 Questions. CLEF (Working Notes) 2021: 274-285 - [c8]Maciej Rybinski, Sarvnaz Karimi, Aleney Khoo:
Science2Cure: A Clinical Trial Search Prototype. SIGIR 2021: 2620-2624 - [c7]Maciej Rybinski, Vincent Nguyen, Sarvnaz Karimi:
CSIROmed Team Report of TREC 2021 Clinical Trials track: Experiments with BERT Reranking Methods. TREC 2021 - 2020
- [c6]Vincent Nguyen, Maciek Rybinski, Sarvnaz Karimi, Zhenchang Xing:
Pandemic Literature Search: Finding Information on COVID-19. ALTA 2020: 92-97 - [c5]Maciej Rybinski, Sarvnaz Karimi:
CSIROmed at TREC Precision Medicine 2020. TREC 2020 - 2019
- [c4]Maciej Rybinski, Sarvnaz Karimi, Cécile Paris:
CSIRO at 2019 TREC Precision Medicine Track. TREC 2019 - 2018
- [c3]Maciej Rybinski, William Miller, Javier Del Ser, Miren Nekane Bilbao, José Francisco Aldana-Montes:
On the Design and Tuning of Machine Learning Models for Language Toxicity Classification in Online Platforms. IDC 2018: 329-343 - [c2]Ernesto Jiménez-Ruiz, Tzanina Saveta, Ondrej Zamazal, Sven Hertling, Michael Röder, Irini Fundulaki, Axel-Cyrille Ngonga Ngomo, Mohamed Ahmed Sherif, Amina Annane, Zohra Bellahsene, Sadok Ben Yahia, Gayo Diallo, Daniel Faria, Marouen Kachroudi, Abderrahmane Khiat, Patrick Lambrix, Huanyu Li, Maximilian Mackeprang, Majid Mohammadi, Maciej Rybinski, Booma Sowkarthiga Balasubramani, Cássia Trojahn:
Introducing the HOBBIT platform into the ontology alignment evaluation campaign. OM@ISWC 2018: 49-60 - 2016
- [c1]Maciej Rybinski, María del Mar Roldán-García, José García-Nieto, José Francisco Aldana-Montes:
DisMatch results for OAEI 2016. OM@ISWC 2016: 161-165
Editorship
- 2022
- [e1]Jia Tina Du, Joel Mackenzie, Mehwish Nasim, Maciek Rybinski:
Proceedings of the 26th Australasian Document Computing Symposium, ADCS 2022, Adelaide, SA, Australia, December 15-16, 2022. ACM 2022 [contents]
Informal and Other Publications
- 2024
- [i3]Yidong Gan, Maciej Rybinski, Ben Hachey, Jonathan K. Kummerfeld:
Aligning AI Research with the Needs of Clinical Coding Workflows: Eight Recommendations Based on US Data Analysis and Critical Review. CoRR abs/2412.18043 (2024) - 2021
- [i2]Diego Mollá, Urvashi Khanna, Dima Galat, Vincent Nguyen, Maciej Rybinski:
Query-Focused Extractive Summarisation for Finding Ideal Answers to Biomedical and COVID-19 Questions. CoRR abs/2108.12189 (2021) - 2020
- [i1]Vincent Nguyen, Maciej Rybinski, Sarvnaz Karimi, Zhenchang Xing:
Searching Scientific Literature for Answers on COVID-19 Questions. CoRR abs/2007.02492 (2020)
Coauthor Index
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