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Adam K. Sieradzan
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2020 – today
- 2024
- [j10]Krzysztof M. Ocetkiewicz, Cezary Czaplewski, Henryk Krawczyk, Agnieszka G. Lipska, Adam Liwo, Jerzy Proficz, Adam K. Sieradzan, Pawel Czarnul
:
Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems. Comput. Phys. Commun. 298: 109112 (2024) - 2023
- [j9]Adam K. Sieradzan
, Jordi Sans-Duñó
, Emilia A. Lubecka
, Cezary Czaplewski
, Agnieszka G. Lipska
, Henryk Leszczynski, Krzysztof M. Ocetkiewicz, Jerzy Proficz
, Pawel Czarnul
, Henryk Krawczyk
, Adam Liwo
:
Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins. J. Comput. Chem. 44(4): 602-625 (2023) - [j8]Agnieszka G. Lipska
, Adam K. Sieradzan
, Cezary Czaplewski
, Andrea D. Lipinska
, Krzysztof M. Ocetkiewicz
, Jerzy Proficz
, Pawel Czarnul
, Henryk Krawczyk
, Adam Liwo
:
Long-time scale simulations of virus-like particles from three human-norovirus strains. J. Comput. Chem. 44(16): 1470-1483 (2023) - 2020
- [j7]Agnieszka S. Karczynska
, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa
, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska
, Sergey A. Samsonov
, Adam K. Sieradzan
, Artur Gieldon
, Adam Liwo
, Rafal Slusarz
, Magdalena Slusarz
, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski
:
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. J. Chem. Inf. Model. 60(3): 1844-1864 (2020)
2010 – 2019
- 2018
- [j6]Adam K. Sieradzan
, Artur Gieldon
, Yanping Yin, Yi He, Harold A. Scheraga, Adam Liwo
:
A new protein nucleic-acid coarse-grained force field based on the UNRES and NARES-2P force fields. J. Comput. Chem. 39(28): 2360-2370 (2018) - [j5]Cezary Czaplewski
, Agnieszka S. Karczynska
, Adam K. Sieradzan
, Adam Liwo
:
UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics. Nucleic Acids Res. 46(Webserver-Issue): W304-W309 (2018) - [j4]Emilia A. Lubecka
, Adam K. Sieradzan
, Cezary Czaplewski
, Pawel Krupa, Adam Liwo
:
High Performance Computing with Coarse Grained Model of Biological Macromolecules. Supercomput. Front. Innov. 5(2): 63-75 (2018) - 2017
- [j3]Adam K. Sieradzan
, Rafal Jakubowski
:
Introduction of steered molecular dynamics into UNRES coarse-grained simulations package. J. Comput. Chem. 38(8): 553-562 (2017) - 2016
- [j2]Pawel Krupa
, Magdalena A. Mozolewska, Marta Wisniewska, Yanping Yin, Yi He, Adam K. Sieradzan, Robert Ganzynkowicz, Agnieszka G. Lipska, Agnieszka S. Karczynska
, Magdalena Slusarz
, Rafal Slusarz
, Artur Gieldon
, Cezary Czaplewski
, Dawid Jagiela, Bartlomiej Zaborowski, Harold A. Scheraga, Adam Liwo
:
Performance of protein-structure predictions with the physics-based UNRES force field in CASP11. Bioinform. 32(21): 3270-3278 (2016) - 2015
- [j1]Adam K. Sieradzan
:
Introduction of periodic boundary conditions into UNRES force field. J. Comput. Chem. 36(12): 940-946 (2015)
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last updated on 2024-06-10 20:30 CEST by the dblp team
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