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2020 – today
- 2025
[c4]Junwen Wang, Oscar MacCormac, William Rochford, Aaron Kujawa, Jonathan Shapey, Tom Vercauteren:
Tree-Based Semantic Losses: Application to Sparsely-Supervised Large Multi-class Hyperspectral Segmentation. MICCAI (8) 2025: 584-594- [i11]Lorena Garcia-Foncillas Macias, Aaron Kujawa, Aya Elshalakany, Jonathan Shapey, Tom Vercauteren:
A generalisable head MRI defacing pipeline: Evaluation on 2,566 meningioma scans. CoRR abs/2505.12999 (2025) - [i10]Navodini Wijethilake, Reuben Dorent, Marina Ivory, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Mohamed Okasha, Anna Oviedova, Hexin Dong, Bogyeong Kang, Guillaume Sallé, Luyi Han, Ziyuan Zhao, Han Liu, Tao Yang, Shahad Hardan, Hussain Alasmawi, Santosh Sanjeev, Yuzhou Zhuang, Satoshi Kondo, Maria G. Baldeon Calisto, Shaikh Muhammad Uzair Noman, Cancan Chen, Ipek Oguz, Rongguo Zhang, Mina Rezaei, Susana K. Lai-Yuen, Satoshi Kasai, Chih-Cheng Hung, Mohammad Yaqub, Lisheng Wang, Benoit M. Dawant, Cuntai Guan, Ritse Mann, Vincent Jaouen, Ji-Wung Han, Li Zhang, Jonathan Shapey, Tom Vercauteren:
crossMoDA Challenge: Evolution of Cross-Modality Domain Adaptation Techniques for Vestibular Schwannoma and Cochlea Segmentation from 2021 to 2023. CoRR abs/2506.12006 (2025) - [i9]Junwen Wang, Oscar MacCormac, William Rochford, Aaron Kujawa, Jonathan Shapey, Tom Vercauteren:
Tree-based Semantic Losses: Application to Sparsely-supervised Large Multi-class Hyperspectral Segmentation. CoRR abs/2506.21150 (2025) - [i8]Junwen Wang, Oscar MacCormac, William Rochford, Aaron Kujawa, Jonathan Shapey, Tom Vercauteren:
Label tree semantic losses for rich multi-class medical image segmentation. CoRR abs/2507.15777 (2025) - [i7]Aaron Kujawa, Thomas C. Booth, Tom Vercauteren:
Beyond one-hot encoding? Journey into compact encoding for large multi-class segmentation. CoRR abs/2510.00667 (2025) - [i6]Navodini Wijethilake, Marina Ivory, Oscar MacCormac, Siddhant Kumar, Aaron Kujawa, Lorena Garcia-Foncillas Macias, Rebecca Burger, Amanda Hitchings, Suki Thomson, Sinan Barazi, Eleni Maratos, Rupert Obholzer, Dan Jiang, Fiona McClenaghan, Kazumi Chia, Omar Al-Salihi, Nick Thomas, Steve Connor, Tom Vercauteren, Jonathan Shapey:
Longitudinal Vestibular Schwannoma Dataset with Consensus-based Human-in-the-loop Annotations. CoRR abs/2511.00472 (2025) - 2024
- [j3]Aaron Kujawa, Reuben Dorent, Steve Connor, Suki Thomson, Marina Ivory, Ali Vahedi, Emily Guilhem, Navodini Wijethilake
, Robert Bradford, Neil Kitchen, Sotirios Bisdas, Sébastien Ourselin, Tom Vercauteren, Jonathan Shapey:
Deep learning for automatic segmentation of vestibular schwannoma: a retrospective study from multi-center routine MRI. Frontiers Comput. Neurosci. 18 (2024) - [c3]Aaron Kujawa, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren:
Label Merge-and-Split: A Graph-Colouring Approach for Memory-Efficient Brain Parcellation. MICCAI (9) 2024: 350-360 - [i5]Aaron Kujawa, Reuben Dorent, Sébastien Ourselin, Tom Vercauteren:
Label merge-and-split: A graph-colouring approach for memory-efficient brain parcellation. CoRR abs/2404.10572 (2024) - 2023
- [j2]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, M. Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Medical Image Anal. 83: 102628 (2023) - [i4]Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, et al.:
MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. CoRR abs/2308.16139 (2023) - 2022
- [c2]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. MLCN@MICCAI 2022: 73-82 - [i3]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR abs/2201.02831 (2022) - [i2]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. CoRR abs/2208.04680 (2022) - 2021
- [c1]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. MICCAI (2) 2021: 615-624 - [i1]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for Weakly Supervised Segmentation. CoRR abs/2107.00583 (2021)
2010 – 2019
- 2015
- [j1]Sebastian C. Niesporek, Stefan H. Hoffmann, Moritz C. Berger, Nadia Benkhedah, Aaron Kujawa, Peter Bachert, Armin M. Nagel:
Partial volume correction for in vivo 23Na-MRI data of the human brain. NeuroImage 112: 353-363 (2015)
Coauthor Index
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