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ORCIDNatalie Stanley
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2020 – today
- 2024
[j7]Jamshaid A. Shahir
, Natalie Stanley, Jeremy E. Purvis:
Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks. BMC Bioinform. 25(1): 25 (2024)- [i9]Chi-Jane Chen, Haidong Yi, Natalie Stanley:
Conditional Similarity Triplets Enable Covariate-Informed Representations of Single-Cell Data. CoRR abs/2406.08638 (2024) - 2023
- [j6]Martin Becker, Huda Nassar, Camilo Espinosa, Ina A. Stelzer, Dorien Feyaerts, Eloïse Berson, Neda Hajiakhoond Bidoki, Alan L. Chang, Geetha Saarunya, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Maric, Samson Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha, Neal G. Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary M. Shaw, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour:
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nat. Comput. Sci. 3(4): 346-359 (2023) - 2022
- [j5]Ivana Maric, Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer, Dorien Feyaerts, Xiaoyuan Han, Andy Tang, Natalie Stanley, Ronald J. Wong, Gavin M. Traber, Mathew Ellenberger, Alan L. Chang, Ramin Fallahzadeh, Huda Nassar, Martin Becker, Maria Xenochristou, Camilo Espinosa, Davide De Francesco, Mohammad S. Ghaemi, Elizabeth K. Costello, Anthony Culos, Xuefeng Bruce Ling, Karl G. Sylvester, Gary L. Darmstadt, Virginia D. Winn, Gary M. Shaw, David A. Relman, Stephen R. Quake, Martin S. Angst, Michael P. Snyder, David K. Stevenson, Brice Gaudilliere, Nima Aghaeepour:
Early prediction and longitudinal modeling of preeclampsia from multiomics. Patterns 3(12): 100655 (2022) - [c6]Siyuan Shan, Vishal Athreya Baskaran, Haidong Yi, Jolene Ranek, Natalie Stanley, Junier B. Oliva:
Transparent single-cell set classification with kernel mean embeddings. BCB 2022: 25:1-25:10 - [c5]Vishal Athreya Baskaran, Jolene Ranek, Siyuan Shan, Natalie Stanley, Junier B. Oliva:
Distribution-based sketching of single-cell samples. BCB 2022: 26:1-26:10 - [c4]Haidong Yi, Natalie Stanley:
CytoEMD: detecting and visualizing between-sample variation in relation to phenotype with earth mover's distance. BCB 2022: 28:1-28:14 - [i8]Siyuan Shan, Vishal Baskaran, Haidong Yi, Jolene Ranek, Natalie Stanley, Junier Oliva:
Interpretable Single-Cell Set Classification with Kernel Mean Embeddings. CoRR abs/2201.07322 (2022) - [i7]Vishal Athreya Baskaran, Jolene Ranek, Siyuan Shan, Natalie Stanley, Junier B. Oliva:
Distribution-based Sketching of Single-Cell Samples. CoRR abs/2207.00584 (2022) - 2021
- [c3]Haidong Yi, Natalie Stanley:
CytoSet: predicting clinical outcomes via set-modeling of cytometry data. BCB 2021: 47:1-47:8 - 2020
- [j4]Anthony Culos, Amy Tsai, Natalie Stanley, Martin Becker, Mohammad Sajjad Ghaemi, David Mcilwain, Ramin Fallahzadeh, Athena Tanada, Huda Nassar, Camilo Espinosa, Maria Xenochristou, Edward Ganio, Laura Peterson, Xiaoyuan Han, Ina A. Stelzer, Kazuo Ando, Dyani Gaudilliere, Thanaphong Phongpreecha, Ivana Maric, Alan L. Chang, Gary M. Shaw, David K. Stevenson, Sean Bendall, Kara L. Davis, Wendy J. Fantl, Garry P. Nolan, Trevor Hastie, Robert Tibshirani, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour:
Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions. Nat. Mach. Intell. 2(10): 619-628 (2020)
2010 – 2019
- 2019
- [j3]Natalie Stanley, Thomas Bonacci, Roland Kwitt, Marc Niethammer, Peter J. Mucha:
Stochastic block models with multiple continuous attributes. Appl. Netw. Sci. 4(1): 54:1-54:22 (2019) - [j2]Mohammad Sajjad Ghaemi, Daniel B. DiGiulio, Kévin Contrepois, Benjamin J. Callahan, Thuy T. M. Ngo, Brittany Lee-McMullen, Benoit Lehallier, Anna Robaczewska, David Mcilwain, Yael Rosenberg-Hasson, Ronald J. Wong, Cecele Quaintance, Anthony Culos, Natalie Stanley, Athena Tanada, Amy Tsai, Dyani Gaudilliere, Edward Ganio, Xiaoyuan Han, Kazuo Ando, Leslie McNeil, Martha Tingle, Paul H. Wise, Ivana Maric, Marina Sirota, Tony Wyss-Coray, Virginia D. Winn, Maurice L. Druzin, Ronald Gibbs, Gary L. Darmstadt, David B. Lewis, Vahid Partovi Nia, Bruno Agard, Robert Tibshirani, Garry P. Nolan, Michael P. Snyder, David A. Relman, Stephen R. Quake, Gary M. Shaw, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour:
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy. Bioinform. 35(1): 95-103 (2019) - 2018
- [b1]Natalie Stanley:
Adapting Community Detection Approaches to Large, Multilayer, and Attributed Networks. University of North Carolina, Chapel Hill, USA, 2018 - [c2]Han Zhang, Natalie Stanley, Peter J. Mucha, Weiyan Yin, Weili Lin, Dinggang Shen:
Multi-layer Large-Scale Functional Connectome Reveals Infant Brain Developmental Patterns. MICCAI (3) 2018: 136-144 - [i6]Natalie Stanley, Thomas Bonacci, Roland Kwitt, Marc Niethammer, Peter J. Mucha:
Stochastic Block Models with Multiple Continuous Attributes. CoRR abs/1803.02726 (2018) - [i5]Natalie Stanley, Marc Niethammer, Peter J. Mucha:
Testing Alignment of Node Attributes with Network Structure Through Label Propagation. CoRR abs/1805.07375 (2018) - 2017
- [c1]Rui Zhang, Natalie Stanley, Christopher Griggs, Andrew Chi, Cynthia Sturton:
Identifying Security Critical Properties for the Dynamic Verification of a Processor. ASPLOS 2017: 541-554 - [i4]Saray Shai, Natalie Stanley, Clara Granell, Dane Taylor, Peter J. Mucha:
Case studies in network community detection. CoRR abs/1705.02305 (2017) - [i3]Natalie Stanley, Roland Kwitt, Marc Niethammer, Peter J. Mucha:
Compressing networks with super nodes. CoRR abs/1706.04110 (2017) - 2016
- [j1]Natalie Stanley, Saray Shai, Dane Taylor, Peter J. Mucha:
Clustering Network Layers with the Strata Multilayer Stochastic Block Model. IEEE Trans. Netw. Sci. Eng. 3(2): 95-105 (2016) - 2015
- [i2]Natalie Stanley, Saray Shai, Dane Taylor, Peter J. Mucha:
Clustering Network Layers With the Strata Multilayer Stochastic Block Model. CoRR abs/1507.01826 (2015) - [i1]Dane Taylor, Saray Shai, Natalie Stanley, Peter J. Mucha:
Enhanced detectability of community structure in multilayer networks through layer aggregation. CoRR abs/1511.05271 (2015)
Coauthor Index
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