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2020 – today
- 2025
[i2]Jianlin Shi, Qiwei Gan, Elizabeth Hanchrow, Annie E. Bowles, Johnathan C. Stanley, Adam Bress, Jordana B. Cohen, Patrick R. Alba:
Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification. CoRR abs/2504.12494 (2025)- 2024
- [j2]Cynthia Hau
, Patricia A. Woods, Amanda S. Guski, Srihari I. Raju, Liang Zhu, Patrick R. Alba, William C. Cushman, Peter A. Glassman, Areef Ishani, Addison A. Taylor, Ryan E. Ferguson, Sarah Leatherman:
Strategies for secondary use of real-world clinical and administrative data for outcome ascertainment in pragmatic clinical trials. J. Biomed. Informatics 150: 104587 (2024) - 2023
- [j1]Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi:
A deep learning approach for medication disposition and corresponding attributes extraction. J. Biomed. Informatics 143: 104391 (2023) - [c19]Scott L. DuVall, Craig G. Parker, Amanda R. Shields, Patrick R. Alba, Julie A. Lynch, Michael E. Matheny, Aaron W. C. Kamauu:
Toward Real-World Reproducibility: Verifying Value Sets for Clinical Research. MedInfo 2023: 164-168 - [c18]Patrick R. Alba, Qiwei Gan, Mengke Hu, Shu-Hong Zhu, Scott E. Sherman, Scott L. DuVall, Mike Conway:
Development of a Natural Language Processing System to Identify Clinical Documentation of Electronic Cigarette Use. MedInfo 2023: 659-663 - [c17]Annie E. Bowles, Cris Perez, Anil Vachani, Jennifer Steltz, Brent Rose, Alex K. Bryant, Hannah Eyre, Scott L. DuVall, Julie A. Lynch, Patrick R. Alba:
An NLP Framework for the Extraction of Concept Measurements from Radiology and Pathology Notes. MedInfo 2023: 1446-1447 - 2021
- [c16]Mike Conway, Patrick R. Alba, Shu-Hong Zhu, Olga V. Patterson:
Vaping at the VA: Developing an Annotated Corpus of Electronic Cigarette Mentions in Clinical Notes at the Department of Veterans Affairs. AMIA 2021 - [c15]Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson:
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. AMIA 2021 - [i1]Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson:
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python. CoRR abs/2106.07799 (2021) - 2020
- [c14]Patrick R. Alba, Olga V. Patterson, Mike Conway:
A Decade of Vaping: Identifying Shifts in Clinical Documentation and Terminology in the Department of Veterans Affairs (2010-2020). AMIA 2020 - [c13]Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall:
Removing barriers to clinical text processing with MedSpaCy. AMIA 2020
2010 – 2019
- 2019
- [c12]Patrick R. Alba, Olga V. Patterson, Joshua S. Richman, Scott L. DuVall:
Automatic Methods to Extract Prescription Status Quality Measures from Unstructured Health Records. MedInfo 2019: 15-19 - [c11]Kristine E. Lynch, Patrick R. Alba, Benjamin Viernes, Scott L. DuVall:
Using Enriched Samples for Semi-Automated Vocabulary Expansion to Identify Rare Events in Clinical Text: Sexual Orientation as a Use Case. MedInfo 2019: 1532-1533 - 2018
- [c10]Patrick R. Alba, Scott L. DuVall, Daniel Norvell, Kathryn P. Moore, Joseph M. Czerniecki, Olga V. Patterson:
Ankle Brachial Index Extraction System. AMIA 2018 - [c9]Alec B. Chapman, Patrick R. Alba, Brian T. Bucher, Scott L. DuVall, Olga V. Patterson:
A User-Friendly Interface for Concept Dictionary Expansion Using Word Embeddings and SNOMED-CT. AMIA 2018 - [c8]Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson:
Fast and Accurate Adverse Drug Event labeling without a GPU. AMIA 2018 - [c7]Alec B. Chapman, Kelly S. Peterson, Patrick R. Alba, Scott L. DuVall, Olga V. Patterson:
Hybrid system for adverse drug event detection. Medication and Adverse Drug Event Detection 2018: 16-24 - 2017
- [c6]Patrick R. Alba, Scott L. DuVall, Terri Elizabeth Workman, Florian Schroeck, Olga V. Patterson:
Pathology Information Extraction in Bladder Cancer Surveillance. AMIA 2017 - 2016
- [c5]Patrick R. Alba, Olga V. Patterson, Benjamin Viernes, Daniel W. Denhalter, Nicole Bailey, Andrew Wilson, Aaron W. C. Kamauu, Scott L. DuVall:
The Super Annotator: A Method of Semi-Automated Rare Event Identification for Large Clinical Data Sets. AMIA 2016 - [c4]Scott L. DuVall, Patrick R. Alba, Olga V. Patterson:
Large Scale Clinical Text Processing and Process Optimization. AMIA 2016 - [c3]Olga V. Patterson, Patrick R. Alba, Scott L. DuVall:
An Introduction to Natural Language Processing Methods in Clinical Research. AMIA 2016 - 2015
- [c2]Patrick R. Alba, Scott L. DuVall, Joanne LaFleur, Adam Bress, Olga V. Patterson:
Knowledge Base Acquisition For Rare Concepts Using Manual Bootstrapping. AMIA 2015 - [c1]Olga V. Patterson, Makoto Jones, Yiwen Yao, Benjamin Viernes, Patrick R. Alba, Theodore J. Iwashyna, Scott L. DuVall:
Extraction of Vital Signs from Clinical Notes. MedInfo 2015: 1035
Coauthor Index
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