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Matej Oresic
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2020 – today
- 2021
- [j16]Partho Sen, Santosh Lamichhane, Vivek Bhakta Mathema, Aidan J. McGlinchey, Alex M. Dickens, Sakda Khoomrung, Matej Oresic:
Deep learning meets metabolomics: a methodological perspective. Briefings Bioinform. 22(2): 1531-1542 (2021)
2010 – 2019
- 2015
- [j15]Tommi Vatanen, Maria Osmala, Tapani Raiko, Krista Lagus, Marko Sysi-Aho, Matej Oresic, Timo Honkela, Harri Lähdesmäki:
Self-organization and missing values in SOM and GTM. Neurocomputing 147: 60-70 (2015) - 2014
- [j14]Erno Lindfors, Paula Jouhten, Merja Oja, Eija Rintala, Matej Oresic, Merja Penttilä:
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae. BMC Syst. Biol. 8: 16 (2014) - 2011
- [j13]Matti Kankainen, Peddinti V. Gopalacharyulu, Liisa Holm, Matej Oresic:
MPEA - metabolite pathway enrichment analysis. Bioinform. 27(13): 1878-1879 (2011) - [j12]Igor Marín de Mas, Vitaly A. Selivanov, Silvia Marin, Josep Roca, Matej Oresic, Loranne Agius, Marta Cascante:
Compartmentation of glycogen metabolism revealed from 13C isotopologue distributions. BMC Syst. Biol. 5: 175 (2011) - [j11]Abhishek Tripathi, Arto Klami, Matej Oresic, Samuel Kaski:
Matching samples of multiple views. Data Min. Knowl. Discov. 23(2): 300-321 (2011) - [j10]Marko Sysi-Aho, Andrey Ermolov, Peddinti V. Gopalacharyulu, Abhishek Tripathi, Tuulikki Seppänen-Laakso, Johanna Maukonen, Ismo Mattila, Suvi T. Ruohonen, Laura Vähätalo, Laxman Yetukuri, Taina Härkönen, Erno Lindfors, Janne Nikkilä, Jorma Ilonen, Olli Simell, Maria Saarela, Mikael Knip, Samuel Kaski, Eriika Savontaus, Matej Oresic:
Metabolic Regulation in Progression to Autoimmune Diabetes. PLoS Comput. Biol. 7(10) (2011) - [c8]Tommi Suvitaival, Ilkka Huopaniemi, Matej Oresic, Samuel Kaski:
Cross-Species Translation of Multi-way Biomarkers. ICANN (1) 2011: 209-216 - 2010
- [j9]Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski:
Multivariate multi-way analysis of multi-source data. Bioinform. 26(12): 391-398 (2010) - [j8]Tomás Pluskal, Sandra Castillo, Alejandro Villar-Briones, Matej Oresic:
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinform. 11: 395 (2010) - [c7]Marko Sysi-Aho, Juha Koikkalainen, Jyrki Lötjönen, Tuulikki Seppänen-Laakso, Hans Söderlund, Tiina Heliö, Matej Oresic:
Searching for Linear Dependencies between Heart Magnetic Resonance Images and Lipid Profiles. Algorithms and Applications 2010: 232-243 - [c6]Jan Budczies, Carsten Denkert, Berit M. Müller, Scarlet F. Brockmöller, Manfred Dietel, Jules L. Griffin, Matej Oresic, Oliver Fiehn:
METAtarget - Extracting Key Enzymes of Metabolic Regulation from Highthroughput Metabolomics Data using KEGG REACTION Information. GCB 2010: 103-112 - [c5]Ilkka Huopaniemi, Tommi Suvitaival, Matej Oresic, Samuel Kaski:
Graphical Multi-way Models. ECML/PKDD (1) 2010: 538-553
2000 – 2009
- 2009
- [j7]Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski:
Two-way analysis of high-dimensional collinear data. Data Min. Knowl. Discov. 19(2): 261-276 (2009) - [c4]Ilkka Huopaniemi, Tommi Suvitaival, Janne Nikkilä, Matej Oresic, Samuel Kaski:
Two-Way Analysis of High-Dimensional Collinear Data. ECML/PKDD (1) 2009: 33 - 2008
- [j6]Peddinti V. Gopalacharyulu, Erno Lindfors, Jarkko Miettinen, Catherine Bounsaythip, Matej Oresic:
An integrative approach for biological data mining and visualisation. Int. J. Data Min. Bioinform. 2(1): 54-77 (2008) - 2007
- [j5]Laura Elo, Henna Järvenpää, Matej Oresic, Riitta Lahesmaa, Tero Aittokallio:
Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. Bioinform. 23(16): 2096-2103 (2007) - [j4]Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic:
Normalization method for metabolomics data using optimal selection of multiple internal standards. BMC Bioinform. 8 (2007) - [j3]Laxman Yetukuri, Mikko Katajamaa, Gema Medina-Gómez, Tuulikki Seppänen-Laakso, Antonio Vidal-Puig, Matej Oresic:
Bioinformatics strategies for lipidomics analysis: characterization of obesity related hepatic steatosis. BMC Syst. Biol. 1: 12 (2007) - [c3]Marko Sysi-Aho, Aki Vehtari, Vidya R. Velagapudi, Jukka Westerbacka, Laxman Yetukuri, Robert Bergholm, Marja-Riitta Taskinen, Hannele Yki-Järvinen, Matej Oresic:
Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles. ISMB/ECCB (Supplement of Bioinformatics) 2007: 519-528 - [i1]Matej Oresic, Jyrki Lötjönen, Catherine Bounsaythip:
megNet®: Visualization and Modelling Environment for Translational Medicine. ERCIM News 2007(69) (2007) - 2006
- [j2]Mikko Katajamaa, Jarkko Miettinen, Matej Oresic:
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinform. 22(5): 634-636 (2006) - 2005
- [j1]Mikko Katajamaa, Matej Oresic:
Processing methods for differential analysis of LC/MS profile data. BMC Bioinform. 6: 179 (2005) - [c2]Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmén, Matej Oresic:
Data integration and visualization system for enabling conceptual biology. ISMB (Supplement of Bioinformatics) 2005: 177-185
1990 – 1999
- 1995
- [c1]Bruce W. Church, Matej Oresic, David Shalloway:
Tracking metastable states to free-energy global minima. Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding 1995: 41-64
Coauthor Index
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