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Shinichi Sunagawa
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2020 – today
- 2024
- [j11]Anna Sintsova, Hans-Joachim Ruscheweyh, Christopher M. Field, Lilith Feer, Bidong D. Nguyen, Benjamin Daniel, Wolf-Dietrich Hardt, Julia A. Vorholt, Shinichi Sunagawa
:
mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations. Bioinform. 40(2) (2024) - 2023
- [j10]Anthony Fullam
, Ivica Letunic
, Thomas S. B. Schmidt
, Quinten R. Ducarmon
, Nicolai Karcher
, Supriya Khedkar
, Michael Kuhn
, Martin Larralde
, Oleksandr M. Maistrenko
, Lukas Malfertheiner
, Alessio Milanese
, João F. Matias Rodrigues, Claudia Sanchis-López
, Christian Schudoma
, Damian Szklarczyk
, Shinichi Sunagawa
, Georg Zeller
, Jaime Huerta-Cepas
, Christian von Mering
, Peer Bork
, Daniel R. Mende
:
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic Acids Res. 51(D1): 760-766 (2023) - 2022
- [j9]Thea Van Rossum
, Paul I. Costea, Lucas Paoli, Renato Alves, Roman Thielemann
, Shinichi Sunagawa
, Peer Bork:
metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes. Bioinform. 38(4): 1162-1164 (2022) - [j8]Caroline Vernette
, Julien Lecubin
, Pablo Sánchez
, Silvia G. Acinas
, Marcel Babin
, Peer Bork, Emmanuel Boss, Chris Bowler, Guy Cochrane
, Colomban de Vargas, Gabriel Gorsky, Lionel Guidi, Nigel Grimsley, Pascal Hingamp
, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels-Lewis, Lee Karp-Boss, Eric Karsenti, Fabrice Not, Hiroyuki Ogata, Nicole Poulton, Stephane Pesant, Christian Sardet, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa
, Patrick Wincker, Tom O. Delmont
, Eric Pelletier
, Magali Lescot
:
The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes. Nucleic Acids Res. 50(W1): 516-526 (2022) - 2021
- [j7]Guillem Salazar
, Hans-Joachim Ruscheweyh, Falk Hildebrand
, Silvia G. Acinas
, Shinichi Sunagawa
:
mTAGs: taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA genes. Bioinform. 38(1): 270-272 (2021) - 2020
- [j6]Daniel R. Mende
, Ivica Letunic, Oleksandr M. Maistrenko
, Thomas S. B. Schmidt
, Alessio Milanese
, Lucas Paoli, Ana Hernández-Plaza, Askarbek N. Orakov, Sofia K. Forslund
, Shinichi Sunagawa
, Georg Zeller
, Jaime Huerta-Cepas
, Luís Pedro Coelho
, Peer Bork:
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. Nucleic Acids Res. 48(Database-Issue): D621-D625 (2020)
2010 – 2019
- 2018
- [j5]Emilie Villar
, Thomas Vannier
, Caroline Vernette
, Magali Lescot
, Miguelangel Cuenca
, Aurélien Alexandre, Paul Bachelerie, Thomas Rosnet
, Eric Pelletier
, Shinichi Sunagawa
, Pascal Hingamp
:
The Ocean Gene Atlas: exploring the biogeography of plankton genes online. Nucleic Acids Res. 46(Webserver-Issue): W289-W295 (2018) - 2017
- [j4]Daniel R. Mende
, Ivica Letunic
, Jaime Huerta-Cepas
, Simone S. Li
, Kristoffer Forslund
, Shinichi Sunagawa
, Peer Bork:
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomes. Nucleic Acids Res. 45(Database-Issue): D529-D534 (2017) - 2016
- [j3]Jens Roat Kultima, Luís Pedro Coelho
, Kristoffer Forslund
, Jaime Huerta-Cepas
, Simone S. Li
, Marja Driessen, Anita Yvonne Voigt
, Georg Zeller
, Shinichi Sunagawa
, Peer Bork:
MOCAT2: a metagenomic assembly, annotation and profiling framework. Bioinform. 32(16): 2520-2523 (2016) - [j2]Jaime Huerta-Cepas
, Damian Szklarczyk, Kristoffer Forslund
, Helen Cook
, Davide Heller, Mathias C. Walter
, Thomas Rattei
, Daniel R. Mende
, Shinichi Sunagawa
, Michael Kuhn
, Lars Juhl Jensen
, Christian von Mering
, Peer Bork
:
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Res. 44(Database-Issue): 286-293 (2016) - 2015
- [j1]Kristoffer Forslund
, Falk Hildebrand
, Trine Nielsen
, Gwen Falony
, Emmanuelle Le Chatelier, Shinichi Sunagawa
, Edi Prifti
, Sara Vieira-Silva
, Valborg Gudmundsdottir
, Helle Krogh Pedersen
, Manimozhiyan Arumugam
, Karsten Kristiansen, Anita Yvonne Voigt
, Henrik Vestergaard
, Rajna Hercog, Paul I. Costea
, Jens Roat Kultima, Junhua Li
, Torben Jørgensen
, Florence Levenez, Joël Dore
, Henrik Bjørn Nielsen, Søren Brunak
, Jeroen Raes
, Torben Hansen
, Jun Wang, S. Dusko Ehrlich, Peer Bork
, Oluf Pedersen
:
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nat. 528(7582): 262-266 (2015)
Coauthor Index
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last updated on 2024-05-16 22:10 CEST by the dblp team
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