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Martin Steinegger
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2020 – today
- 2023
- [j16]Hyunbin Kim
, Milot Mirdita
, Martin Steinegger
:
Foldcomp: a library and format for compressing and indexing large protein structure sets. Bioinform. 39(4) (2023) - [j15]Daniel Liu
, Martin Steinegger
:
Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices. Bioinform. 39(8) (2023) - [j14]Dongwook Kim
, Cameron L. M. Gilchrist
, Jongsik Chun
, Martin Steinegger
:
UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi. Nucleic Acids Res. 51(D1): 777-784 (2023) - 2022
- [j13]Christopher Pockrandt
, Martin Steinegger
, Steven L. Salzberg
:
PhyloCSF++: a fast and user-friendly implementation of PhyloCSF with annotation tools. Bioinform. 38(5): 1440-1442 (2022) - [j12]Konstantin Schütze, Michael Heinzinger, Martin Steinegger, Burkhard Rost:
Nearest neighbor search on embeddings rapidly identifies distant protein relations. Frontiers Bioinform. 2 (2022) - [j11]Ahmed Elnaggar
, Michael Heinzinger
, Christian Dallago
, Ghalia Rehawi
, Yu Wang
, Llion Jones, Tom Gibbs
, Tamas Feher
, Christoph Angerer, Martin Steinegger
, Debsindhu Bhowmik
, Burkhard Rost
:
ProtTrans: Toward Understanding the Language of Life Through Self-Supervised Learning. IEEE Trans. Pattern Anal. Mach. Intell. 44(10): 7112-7127 (2022) - 2021
- [j10]Milot Mirdita
, Martin Steinegger
, Florian P. Breitwieser
, Johannes Söding
, Eli Levy Karin
:
Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinform. 37(18): 3029-3031 (2021) - [j9]Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita
, Zoran Obradovic, Johannes Söding
, Martin Steinegger
, Yaoqi Zhou
, Lukasz A. Kurgan
:
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49(Database-Issue): D298-D308 (2021) - [j8]Michael Bernhofer
, Christian Dallago
, Timothy Karl, Venkata P. Satagopam
, Michael Heinzinger, Maria Littmann, Tobias Olenyi
, Jiajun Qiu
, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy
, Nir Ben-Tal
, Yana Bromberg
, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita
, Piotr Gawron, Wei Gu
, Yohan Jarosz, Christophe Trefois
, Martin Steinegger
, Reinhard Schneider
, Burkhard Rost
:
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021) - 2020
- [i1]Ahmed Elnaggar, Michael Heinzinger, Christian Dallago, Ghalia Rehawi
, Yu Wang, Llion Jones, Tom Gibbs, Tamas Feher, Christoph Angerer, Martin Steinegger
, Debsindhu Bhowmik, Burkhard Rost:
ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised Deep Learning and High Performance Computing. CoRR abs/2007.06225 (2020)
2010 – 2019
- 2019
- [j7]Milot Mirdita
, Martin Steinegger
, Johannes Söding:
MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinform. 35(16): 2856-2858 (2019) - [j6]Martin Steinegger
, Markus Meier, Milot Mirdita
, Harald Vöhringer
, Stephan J. Haunsberger, Johannes Söding
:
HH-suite3 for fast remote homology detection and deep protein annotation. BMC Bioinform. 20(1): 473:1-473:15 (2019) - 2018
- [j5]Yannick Mahlich, Martin Steinegger
, Burkhard Rost
, Yana Bromberg
:
HFSP: high speed homology-driven function annotation of proteins. Bioinform. 34(13): i304-i312 (2018) - 2017
- [j4]Milot Mirdita
, Lars von den Driesch, Clovis Galiez, Maria Jesus Martin, Johannes Söding, Martin Steinegger
:
Uniclust databases of clustered and deeply annotated protein sequences and alignments. Nucleic Acids Res. 45(Database-Issue): D170-D176 (2017) - [c1]Janik Deutscher
, Klaus Granica, Martin Steinegger, Manuela Hirschmugl, Roland Perko, Mathias Schardt:
Updating lidar-derived crown cover density products with sentinel-2. IGARSS 2017: 2867-2874 - 2016
- [j3]Maria Hauser, Martin Steinegger
, Johannes Söding
:
MMseqs software suite for fast and deep clustering and searching of large protein sequence sets. Bioinform. 32(9): 1323-1330 (2016) - 2015
- [j2]Heinz Gallaun
, Martin Steinegger, Roland Wack, Mathias Schardt, Birgit Kornberger, Ursula Schmitt:
Remote Sensing Based Two-Stage Sampling for Accuracy Assessment and Area Estimation of Land Cover Changes. Remote. Sens. 7(9): 11992-12008 (2015) - 2014
- [j1]Manuela Hirschmugl
, Martin Steinegger, Heinz Gallaun
, Mathias Schardt:
Mapping Forest Degradation due to Selective Logging by Means of Time Series Analysis: Case Studies in Central Africa. Remote. Sens. 6(1): 756-775 (2014)
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