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ORCIDVasilis J. Promponas
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- affiliation: University of Cyprus, Nicosia, Cyprus
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2020 – today
- 2023
[j27]Dimitrios Vasileiou, Christos Karapiperis, Ismini Baltsavia, Anastasia Chasapi, Dag G. Ahrén, Paul J. Janssen
, Ioannis Iliopoulos, Vasilis J. Promponas, Anton J. Enright, Christos A. Ouzounis:
CGG toolkit: Software components for computational genomics. PLoS Comput. Biol. 19(11) (2023)- 2022
- [j26]Konstantinos Charalampous, Michalis Agathocleous, Chris Christodoulou, Vasilis J. Promponas:
Solving the Protein Secondary Structure Prediction Problem With the Hessian Free Optimization Algorithm. IEEE Access 10: 27759-27770 (2022) - [j25]Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50(D1): 480-487 (2022) - 2020
- [j24]Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro:
Disentangling the complexity of low complexity proteins. Briefings Bioinform. 21(2): 458-472 (2020) - [j23]Anastasia Chasapi, Vasilis J. Promponas, Christos A. Ouzounis:
The bioinformatics wealth of nations. Bioinform. 36(9): 2963-2965 (2020) - [j22]András Hatos, Borbála Hajdu-Soltész, Alexander Miguel Monzon, Nicolas Palopoli, Lucía Álvarez, Burcu Aykaç Fas, Claudio Bassot, Guillermo I. Benítez, Martina Bevilacqua, Anastasia Chasapi, Lucía B. Chemes, Norman E. Davey, Radoslav Davidovic, A. Keith Dunker, Arne Elofsson, Julien Gobeill, Nicolás S. González Foutel, Govindarajan Sudha, Mainak Guharoy, Tamás Horváth, Valentin Iglesias, Andrey V. Kajava, Orsolya P. Kovács, John Lamb, Matteo Lambrughi, Tamas Lazar, Jeremy Y. Leclercq, Emanuela Leonardi, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Emiliano Maiani, José A. Manso, Cristina Marino Buslje, Elizabeth Martínez-Pérez, Bálint Mészáros, Ivan Micetic, Giovanni Minervini, Nikoletta Murvai, Marco Necci, Christos A. Ouzounis, Mátyás Pajkos, Lisanna Paladin, Rita Pancsa, Elena Papaleo, Gustavo D. Parisi, Emilie Pasche, Pedro J. Barbosa Pereira, Vasilis J. Promponas, Jordi Pujols, Federica Quaglia, Patrick Ruch, Marco Salvatore, Éva Schád, Beáta Szabó, Tamás Szaniszló, Stella Tamana, Ágnes Tantos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan:
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020) - [j21]Patryk Jarnot, Joanna Ziemska-Legiecka, Laszlo Dobson, Matthew Merski, Pablo Mier, Miguel A. Andrade-Navarro, John M. Hancock, Zsuzsanna Dosztányi, Lisanna Paladin, Marco Necci, Damiano Piovesan, Silvio C. E. Tosatto, Vasilis J. Promponas, Marcin Grynberg, Aleksandra Gruca:
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins. Nucleic Acids Res. 48(Webserver-Issue): W77-W84 (2020)
2010 – 2019
- 2019
- [j20]Anastasia Chasapi, Michalis Aivaliotis, Lefteris Angelis, Anastasios Chanalaris, Ioannis Iliopoulos, Ilias Kappas, Christos Karapiperis, Nikos Kyrpides, Evangelos Pafilis, Eleftherios Panteris, Pantelis Topalis, George Tsiamis, Ioannis S. Vizirianakis, Metaxia Vlassi, Vasilis J. Promponas, Christos A. Ouzounis:
Establishment of computational biology in Greece and Cyprus: Past, present, and future. PLoS Comput. Biol. 15(12) (2019) - 2018
- [c9]Antreas Dionysiou, Michalis Agathocleous, Chris Christodoulou, Vasilis J. Promponas:
Convolutional Neural Networks in Combination with Support Vector Machines for Complex Sequential Data Classification. ICANN (2) 2018: 444-455 - 2016
- [c8]Michalis Agathocleous, Chris Christodoulou, Vasilis J. Promponas, Petros Kountouris, Vassilis Vassiliades:
Training Bidirectional Recurrent Neural Network Architectures with the Scaled Conjugate Gradient Algorithm. ICANN (1) 2016: 123-131 - 2015
- [j19]Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31(6): 979 (2015) - [j18]Ioannis Kirmitzoglou, Vasilis J. Promponas:
LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences. Bioinform. 31(13): 2208-2210 (2015) - 2014
- [j17]Vasilis J. Promponas, Christos A. Ouzounis, Ioannis Iliopoulos:
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. Briefings Bioinform. 15(3): 443-454 (2014) - [j16]Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos:
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30(22): 3249-3256 (2014) - [j15]Grigorios Chrysos, Euripides Sotiriades, Christos Rousopoulos, K. Pramataris, Ioannis Papaefstathiou, Apostolos Dollas, Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theo Theocharides, George Petihakis, Jacques Lagnel:
Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms. IEEE Des. Test 31(1): 62-73 (2014) - [j14]Efthyvoulos C. Kyriacou, Vasilis J. Promponas, Ilias Maglogiannis, Christos N. Schizas, Constantinos S. Pattichis:
Editorial: Intelligent Biomedical Systems. Int. J. Artif. Intell. Tools 23(3) (2014) - [j13]Manolis Tsiknakis, Vasilis J. Promponas, Norbert M. Graf, May D. Wang, Stephen T. C. Wong, Nikolaos G. Bourbakis, Constantinos S. Pattichis:
Guest Editorial: Computational Solutions to Large-Scale Data Management and Analysis in Translational and Personalized Medicine. IEEE J. Biomed. Health Informatics 18(3): 720-721 (2014) - 2013
- [j12]Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theocharis Theocharides:
FPGA-based hardware acceleration for local complexity analysis of massive genomic data. Integr. 46(3): 230-239 (2013) - [c7]Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theocharis Theocharides:
GPU technology as a platform for accelerating local complexity analysis of protein sequences. EMBC 2013: 2684-2687 - 2012
- [j11]Athina Theodosiou, Vasilis J. Promponas:
LaTcOm: a web server for visualizing rare codon clusters in coding sequences. Bioinform. 28(4): 591-592 (2012) - [j10]Petros Kountouris, Michalis Agathocleous, Vasilis J. Promponas, Georgia Christodoulou, Simos Hadjicostas, Vassilis Vassiliades, Chris Christodoulou:
A Comparative Study on Filtering Protein Secondary Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 731-739 (2012) - [c6]Stella Tamana, Ioannis Kirmitzoglou, Vasilis J. Promponas:
Sequence features of Compositionally Biased regions in three dimensional protein structures. BIBE 2012: 270-275 - [c5]Christos C. Kannas, Kleo G. Achilleos, Zinonas C. Antoniou, Christos A. Nicolaou, Constantinos S. Pattichis, Ioanna Kalvari, Ioannis Kirmitzoglou, Vasilis J. Promponas:
A workflow system for virtual screening in cancer chemoprevention. BIBE 2012: 439-446 - [c4]Kleo G. Achilleos, Christos C. Kannas, Christos A. Nicolaou, Constantinos S. Pattichis, Vasilis J. Promponas:
Open source workflow systems in life sciences informatics. BIBE 2012: 552-558 - [c3]Grigorios Chrysos, Euripides Sotiriades, Christos Rousopoulos, Apostolos Dollas, Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theocharis Theocharides, George Petihakis, Jacques Lagnel, Panagiotis Vavylis, George Kotoulas:
Opportunities from the use of FPGAs as platforms for bioinformatics algorithms. BIBE 2012: 559-565 - [c2]Agathoklis Papadopoulos, Vasilis J. Promponas, Theocharis Theocharides:
Towards systolic hardware acceleration for local complexity analysis of massive genomic data. ACM Great Lakes Symposium on VLSI 2012: 339-344 - 2011
- [j9]Nikolas Papanikolaou, Evangelos Pafilis, Stavros Nikolaou, Christos A. Ouzounis, Ioannis Iliopoulos, Vasilis J. Promponas:
BioTextQuest: a web-based biomedical text mining suite for concept discovery. Bioinform. 27(23): 3327-3328 (2011) - 2010
- [j8]Alexis Ioannou, Konstantinos Fokianos, Vasilis J. Promponas:
Spectral density ratio based clustering methods for the binary segmentation of protein sequences: A comparative study. Biosyst. 100(2): 132-143 (2010) - [c1]Michalis Agathocleous, Georgia Christodoulou, Vasilis J. Promponas, Chris Christodoulou, Vassilis Vassiliades, Antonis Antoniou:
Protein Secondary Structure Prediction with Bidirectional Recurrent Neural Nets: Can Weight Updating for Each Residue Enhance Performance? AIAI 2010: 128-137
2000 – 2009
- 2008
- [j7]Alexios Savvides, Vasilis J. Promponas, Konstantinos Fokianos:
Clustering of biological time series by cepstral coefficients based distances. Pattern Recognit. 41(7): 2398-2412 (2008) - 2004
- [j6]Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vasilis J. Promponas, Stavros J. Hamodrakas:
PRED-GPCR: GPCR recognition and family classification server. Nucleic Acids Res. 32(Web-Server-Issue): 380-382 (2004) - 2003
- [j5]Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vasilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David M. A. Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis:
Evaluation of annotation strategies using an entire genome sequence. Bioinform. 19(6): 717-726 (2003) - [j4]Georgios S. Vernikos, Christos G. Gkogkas, Vasilis J. Promponas, Stavros J. Hamodrakas:
GeneViTo: Visualizing gene-product functional and structural features in genomic datasets. BMC Bioinform. 4: 53 (2003) - 2000
- [j3]Vasilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis:
CAST: an iterative algorithm for the complexity analysis of sequence tracts. Bioinform. 16(10): 915-922 (2000)
1990 – 1999
- 1998
- [j2]C. M. Pasquier, Vasilis J. Promponas, N. J. Varvayannis, Stavros J. Hamodrakas:
A web server to locate periodicities in a sequence. Bioinform. 14(8): 749-750 (1998) - [j1]Vasilis J. Promponas, G. A. Palaios, C. M. Pasquier, J. S. Hamodrakas, Stavros J. Hamodrakas:
CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods. Silico Biol. 1(3): 159-162 (1998)
Coauthor Index
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