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ORCIDYukiko Matsuoka
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2010 – 2019
- 2016
[j13]Kun-Yi Hsin, Yukiko Matsuoka, Yoshiyuki Asai, Kyota Kamiyoshi, Tokiko Watanabe, Yoshihiro Kawaoka, Hiroaki Kitano:
systemsDock: a web server for network pharmacology-based prediction and analysis. Nucleic Acids Res. 44(Webserver-Issue): W507-W513 (2016)- 2013
- [j12]Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld
, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka:
A comprehensive map of the influenza A virus replication cycle. BMC Syst. Biol. 7: 97 (2013) - [j11]Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro:
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. PLoS Comput. Biol. 9(1) (2013) - [c3]Yoshiyuki Asai, Takeshi Abe, Hideki Oka, Masao Okita, Tomohiro Okuyama, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano:
A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation. EMBC 2013: 5529-5532 - 2012
- [j10]Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber:
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28(15): 2016-2021 (2012) - [j9]Satoshi Mizuno, Risa Iijima, Soichi Ogishima, Masataka Kikuchi, Yukiko Matsuoka, Samik Ghosh, Tadashi Miyamoto, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka:
AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. BMC Syst. Biol. 6: 52 (2012) - [j8]Jason E. Shoemaker, Satoshi Fukuyama, Amie J. Eisfeld, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Yukiko Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka:
Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs. BMC Syst. Biol. 6: 117 (2012) - 2011
- [j7]Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano:
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases. Bioinform. 27(17): 2414-2421 (2011) - [j6]Huaiyu Mi, Anushya Muruganujan, Emek Demir, Yukiko Matsuoka, Akira Funahashi, Hiroaki Kitano, Paul D. Thomas:
BioPAX support in CellDesigner. Bioinform. 27(24): 3437-3438 (2011) - 2010
- [j5]Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano:
Payao: a community platform for SBML pathway model curation. Bioinform. 26(10): 1381-1383 (2010) - [j4]Brian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun'ichi Tsujii:
PathText: a text mining integrator for biological pathway visualizations. Bioinform. 26(12): 374-381 (2010)
2000 – 2009
- 2008
- [j3]Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Mineo Morohashi, Norihiro Kikuchi, Hiroaki Kitano:
CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks. Proc. IEEE 96(8): 1254-1265 (2008) - [c2]Rune Sætre, Brian Kemper, Kanae Oda, Naoaki Okazaki, Yukiko Matsuoka, Norihiro Kikuchi, Hiroaki Kitano, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun'ichi Tsujii:
Connecting Text Mining and Pathways using the PathText Resource. LREC 2008 - 2007
- [j2]Akira Funahashi, Akiya Jouraku, Yukiko Matsuoka, Hiroaki Kitano:
Integration of CellDesigner and SABIO-RK. Silico Biol. 7(6): 81-90 (2007) - 2006
- [c1]Akira Funahashi, Yukiko Matsuoka, Akiya Jouraku, Hiroaki Kitano, Norihiro Kikuchi:
CellDesigner: a modeling tool for biochemical networks. WSC 2006: 1707-1712 - 2004
- [j1]Hiroaki Kitano, Fuminori Yamasaki, Tatsuya Matsui, Ken Endo, Yukiko Matsuoka, Hiroshi Kaminaga, Yuichiro Kato:
The Story of Pino. Int. J. Humanoid Robotics 1(3): 449-463 (2004)
Coauthor Index
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