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Paola Paci
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2020 – today
- 2023
- [c5]Martina Brunetti, Paola Paci, Giulia Fiscon:
A network-based bioinformatic analysis for identifying potential repurposable active molecules in different types of human cancers. BIBM 2023: 3626-3631 - [c4]Alessio Funari, Paola Paci, Federica Conte:
Network-based analysis to uncover drug-induced adverse side-effects. BIBM 2023: 3632-3637 - [c3]Pasquale Sibilio, Stefano Di Giulio, Alessio Funari, Paola Paci, Veronica Veschi, Giuseppe Giannini:
A single-cell transcriptomic analysis of Neuroblastomas revealed a selective cGAS-STING pathway suppression in malignant cells. BIBM 2023: 3654-3661 - [c2]Verdiana Zulian, Anna Rosa Garbuglia, Giulia Fiscon, Paola Paci:
Overview of bioinformatic tools to study viral infections. BIBM 2023: 3669-3675 - 2022
- [j18]Paola Paci, Giulia Fiscon:
SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks. Bioinform. 38(2): 586-588 (2022) - [j17]Paola Paci, Giulia Fiscon:
SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks. BMC Bioinform. 23(1): 166 (2022) - [j16]Federica Conte, Federico Papa, Paola Paci, Lorenzo Farina:
StaRTrEK: in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition. BMC Bioinform. 23(1): 190 (2022) - [j15]Fabrizio Angiulli, Teresa Colombo, Fabio Fassetti, Angelo Furfaro, Paola Paci:
Mining sponge phenomena in RNA expression data. J. Bioinform. Comput. Biol. 20(1): 2150022:1-2150022:27 (2022) - [j14]Federica Conte, Pasquale Sibilio, Giulia Fiscon, Paola Paci:
A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes. Symmetry 14(11): 2230 (2022) - 2021
- [j13]Giulia Fiscon, Paola Paci:
SAveRUNNER: an R-based tool for drug repurposing. BMC Bioinform. 22(1): 150 (2021) - [j12]Manuela Petti, Antonella Verrienti, Paola Paci, Lorenzo Farina:
SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups. Comput. Biol. Medicine 135: 104567 (2021) - [j11]Giulia Fiscon, Francesco Salvadore, Valerio Guarrasi, Anna Rosa Garbuglia, Paola Paci:
Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19. Comput. Biol. Medicine 135: 104657 (2021) - [j10]Francesco Salvadore, Giulia Fiscon, Paola Paci:
Integro-differential approach for modeling the COVID-19 dynamics - Impact of confinement measures in Italy. Comput. Biol. Medicine 139: 105013 (2021) - [j9]Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci:
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19. PLoS Comput. Biol. 17(2) (2021)
2010 – 2019
- 2019
- [j8]Valerio Licursi, Federica Conte, Giulia Fiscon, Paola Paci:
MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis. BMC Bioinform. 20(1): 545:1-545:10 (2019) - [r1]Paolo Tieri, Lorenzo Farina, Manuela Petti, Laura Astolfi, Paola Paci, Filippo Castiglione:
Network Inference and Reconstruction in Bioinformatics. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 805-813 - 2014
- [j7]Paola Paci, Teresa Colombo, Lorenzo Farina:
Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer. BMC Syst. Biol. 8: 83 (2014) - [j6]Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani:
Modules Identification in Protein Structures: The Topological and Geometrical Solutions. J. Chem. Inf. Model. 54(1): 159-168 (2014) - [j5]Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani:
Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions. J. Chem. Inf. Model. 54(3): 1010 (2014) - 2012
- [j4]Luisa Di Paola, Paola Paci, Daniele Santoni, Micol De Ruvo, Alessandro Giuliani:
Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles. J. Chem. Inf. Model. 52(2): 474-482 (2012) - [j3]Filippo Cacace, Paola Paci, Valerio Cusimano, Alfredo Germani, Lorenzo Farina:
Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay. PLoS Comput. Biol. 8(11) (2012)
2000 – 2009
- 2009
- [j2]Francesco Pappalardo, Mark D. Halling-Brown, Nicolas Rapin, Ping Zhang, Davide Alemani, Andrew P. J. Emerson, Paola Paci, Patrice Duroux, Marzio Pennisi, Arianna Palladini, Olivo Miotto, Daniel Churchill, Elda Rossi, Adrian J. Shepherd, David S. Moss, Filippo Castiglione, Massimo Bernaschi, Marie-Paule Lefranc, Søren Brunak, Santo Motta, Pierluigi Lollini, Kaye E. Basford, Vladimir Brusic:
ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings Bioinform. 10(3): 330-340 (2009) - [j1]Valentina Baldazzi, Paola Paci, Massimo Bernaschi, Filippo Castiglione:
Modeling lymphocyte homing and encounters in lymph nodes. BMC Bioinform. 10: 387 (2009) - 2008
- [c1]Paola Paci, Filippo Castiglione, Massimo Bernaschi, Valentina Baldazzi:
A Discrete/Continuous Model of Anti-HIV Response and Therapy. UKSim 2008: 481-486
Coauthor Index
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