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2020 – today
- 2023
[j9]Mercedeh Movassagh
, Steven J. Schiff, Joseph N. Paulson:
mbQTL: an R/Bioconductor package for microbial quantitative trait loci (QTL) estimation. Bioinform. 39(9) (2023)- 2022
- [j8]Carsten Henneges, Joseph N. Paulson:
GameRank: R package for feature selection and construction. Bioinform. 38(20): 4840-4842 (2022) - 2021
- [j7]Janina Reeder, Mo Huang, Joshua S. Kaminker, Joseph N. Paulson:
MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities. Bioinform. 37(9): 1317-1318 (2021) - [j6]Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower:
Multivariable association discovery in population-scale meta-omics studies. PLoS Comput. Biol. 17(11) (2021) - 2020
- [j5]Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood:
A reference map of the human binary protein interactome. Nat. 580(7803): 402-408 (2020)
2010 – 2019
- 2019
- [j4]Nathan D. Olson, Nidhi Shah, Jayaram Kancherla, Justin Wagner, Joseph N. Paulson, Héctor Corrada Bravo:
metagenomeFeatures: an R package for working with 16S rRNA reference databases and marker-gene survey feature data. Bioinform. 35(19): 3870-3872 (2019) - [i1]Justin Williams, Héctor Corrada Bravo, Jennifer Tom, Joseph N. Paulson:
microbiomeDASim: Simulating longitudinal differential abundance for microbiome data. F1000Research 8: 1769 (2019) - 2017
- [j3]Daniel Schlauch, Joseph N. Paulson, Albert Young, Kimberly Glass, John Quackenbush:
Estimating gene regulatory networks with pandaR. Bioinform. 33(14): 2232-2234 (2017) - [j2]Joseph N. Paulson, Cho-Yi Chen, Camila Miranda Lopes-Ramos, Marieke L. Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush:
Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data. BMC Bioinform. 18(1): 437:1-437:10 (2017) - 2016
- [j1]Justin Wagner, Joseph N. Paulson, Xiao Wang, Bobby Bhattacharjee, Héctor Corrada Bravo:
Privacy-preserving microbiome analysis using secure computation. Bioinform. 32(12): 1873-1879 (2016)
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