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2020 – today
- 2023
[j12]Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li
, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84: 102680 (2023)- [j11]Tobias Roß, Pierangela Bruno, Annika Reinke, Manuel Wiesenfarth, Lisa Koeppel, Peter M. Full, Bünyamin Pekdemir, Patrick Godau, Darya Trofimova, Fabian Isensee, Tim J. Adler, Thuy Nuong Tran, Sara Moccia, Francesco Calimeri, Beat P. Müller-Stich, Annette Kopp-Schneider, Lena Maier-Hein:
Beyond rankings: Learning (more) from algorithm validation. Medical Image Anal. 86: 102765 (2023) - [c26]Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, M. Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, B. Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Q. Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, P. Morais, M. A. Naser, B. Oliveira, D. Owen, S. Pang, J. Park, S. Park, S. Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, N. Saeed, Adam Shephard, P. Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, S. Yang, Y. Yang, Z. Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein:
Why is the Winner the Best? CVPR 2023: 19955-19966 - [i45]Carsten T. Lüth, David Zimmerer, Gregor Köhler, Paul F. Jaeger, Fabian Isensee, Jens Petersen, Klaus H. Maier-Hein:
CRADL: Contrastive Representations for Unsupervised Anomaly Detection and Localization. CoRR abs/2301.02126 (2023) - [i44]Karol Gotkowski, Shuvam Gupta, Jose R. A. Godinho, Camila G. S. Tochtrop, Klaus H. Maier-Hein, Fabian Isensee:
[Work in progress] Scalable, out-of-the box segmentation of individual particles from mineral samples acquired with micro CT. CoRR abs/2301.13319 (2023) - [i43]Annika Reinke, Minu Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Carole H. Sudre, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Arriel Benis, Matthew B. Blaschko, Florian Büttner, M. Jorge Cardoso, Veronika Cheplygina, Jianxu Chen, Evangelia Christodoulou, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Luciana Ferrer, Adrian Galdran, Bram van Ginneken, Ben Glocker, Patrick Godau, Robert Haase, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Dagmar Kainmueller, Bernhard Kainz, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Jens Kleesiek, Florian Kofler, Thijs Kooi, Annette Kopp-Schneider, Michal Kozubek, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, Karel G. M. Moons, Henning Müller, Brennan Nichyporuk, Felix Nickel, Jens Petersen, Susanne M. Rafelski, Nasir M. Rajpoot, Mauricio Reyes, Michael A. Riegler, Nicola Rieke, Julio Saez-Rodriguez, Clara I. Sánchez, Shravya Shetty, Maarten van Smeden, Ronald M. Summers, Abdel A. Taha, Aleksei Tiulpin, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Manuel Wiesenfarth, Ziv R. Yaniv, Paul F. Jäger, Lena Maier-Hein:
Understanding metric-related pitfalls in image analysis validation. CoRR abs/2302.01790 (2023) - [i42]Saikat Roy, Gregor Köhler, Constantin Ulrich, Michael Baumgartner, Jens Petersen, Fabian Isensee, Paul F. Jaeger, Klaus H. Maier-Hein:
MedNeXt: Transformer-driven Scaling of ConvNets for Medical Image Segmentation. CoRR abs/2303.09975 (2023) - [i41]Constantin Ulrich, Fabian Isensee, Tassilo Wald, Maximilian Zenk, Michael Baumgartner, Klaus H. Maier-Hein:
MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation. CoRR abs/2303.14444 (2023) - [i40]Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, Ali Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, et al.:
Why is the winner the best? CoRR abs/2303.17719 (2023) - [i39]Saikat Roy, Gregor Köhler, Michael Baumgartner, Constantin Ulrich, Jens Petersen, Fabian Isensee, Klaus H. Maier-Hein:
Transformer Utilization in Medical Image Segmentation Networks. CoRR abs/2304.04225 (2023) - [i38]Nicholas Heller, Fabian Isensee, Dasha Trofimova, Resha Tejpaul, Zhongchen Zhao, Huai Chen, Lisheng Wang, Alex Golts, Daniel Khapun, Daniel Shats, Yoel Shoshan, Flora Gilboa-Solomon, Yasmeen George, Xi Yang, Jianpeng Zhang, Jing Zhang, Yong Xia, Mengran Wu, Zhiyang Liu, Edward Walczak, Seán McSweeney, Ranveer Vasdev, Chris Hornung, Rafat Solaiman, Jamee Schoephoerster, Bailey Abernathy, David Wu, Safa Abdulkadir, Ben Byun, Justice Spriggs, Griffin Struyk, Alexandra Austin, Ben Simpson, Michael Hagström, Sierra Virnig, John French, Nitin Venkatesh, Sarah Chan, Keenan Moore, Anna Jacobsen, Susan Austin, Mark Austin, Subodh Regmi, Nikolaos Papanikolopoulos, Christopher Weight:
The KiTS21 Challenge: Automatic segmentation of kidneys, renal tumors, and renal cysts in corticomedullary-phase CT. CoRR abs/2307.01984 (2023) - [i37]Tassilo Wald, Constantin Ulrich, Fabian Isensee, David Zimmerer, Gregor Köhler, Michael Baumgartner, Klaus H. Maier-Hein:
Exploring new ways: Enforcing representational dissimilarity to learn new features and reduce error consistency. CoRR abs/2307.02516 (2023) - [i36]Balint Kovacs, Nils Netzer, Michael Baumgartner, Carolin Eith, Dimitrios Bounias, Clara Meinzer, Paul F. Jaeger, Kevin S. Zhang, Ralf Floca, Adrian Schrader, Fabian Isensee, Regula Gnirs, Magdalena Goertz, Viktoria Schuetz, Albrecht Stenzinger, Markus Hohenfellner, Heinz-Peter Schlemmer, Ivo Wolf, David Bonekamp, Klaus H. Maier-Hein:
Anatomy-informed Data Augmentation for Enhanced Prostate Cancer Detection. CoRR abs/2309.03652 (2023) - [i35]Gregor Köhler, Tassilo Wald, Constantin Ulrich, David Zimmerer, Paul F. Jaeger, Jörg K. H. Franke, Simon Kohl, Fabian Isensee, Klaus H. Maier-Hein:
RecycleNet: Latent Feature Recycling Leads to Iterative Decision Refinement. CoRR abs/2309.07513 (2023) - 2022
- [j10]Holger R. Roth, Ziyue Xu, Carlos Tor-Díez, Ramon Sanchez-Jacob, Jonathan Zember, Jose Molto, Wenqi Li, Sheng Xu, Baris Turkbey, Evrim Turkbey, Dong Yang, Ahmed Harouni, Nicola Rieke, Shishuai Hu, Fabian Isensee, Claire Tang, Qinji Yu, Jan Sölter, Tong Zheng, Vitali Liauchuk, Ziqi Zhou, Jan Hendrik Moltz, Bruno Oliveira, Yong Xia, Klaus H. Maier-Hein, Qikai Li, Andreas Husch, Luyang Zhang, Vassili Kovalev, Li Kang, Alessa Hering, João L. Vilaça, Mona Flores, Daguang Xu, Bradford J. Wood, Marius George Linguraru:
Rapid artificial intelligence solutions in a pandemic - The COVID-19-20 Lung CT Lesion Segmentation Challenge. Medical Image Anal. 82: 102605 (2022) - [j9]David Zimmerer, Peter M. Full, Fabian Isensee, Paul Jäger, Tim Adler, Jens Petersen, Gregor Köhler, Tobias Roß, Annika Reinke, Antanas Kascenas, Bjørn Sand Jensen, Alison Q. O'Neil, Jeremy Tan, Benjamin Hou, James Batten, Huaqi Qiu, Bernhard Kainz, Nina Shvetsova, Irina Fedulova, Dmitry V. Dylov, Baolun Yu, Jianyang Zhai, Jingtao Hu, Runxuan Si, Sihang Zhou, Siqi Wang, Xinyang Li, Xuerun Chen, Yang Zhao, Sergio Naval Marimont, Giacomo Tarroni, Victor Saase, Lena Maier-Hein, Klaus H. Maier-Hein:
MOOD 2020: A Public Benchmark for Out-of-Distribution Detection and Localization on Medical Images. IEEE Trans. Medical Imaging 41(10): 2728-2738 (2022) - [c25]Michael Baumgartner, Paul F. Jäger, Fabian Isensee, Klaus H. Maier-Hein:
Abstract: nnDetection - A Self-configuring Method for Medical Object Detection. Bildverarbeitung für die Medizin 2022: 50 - [c24]Maximilian Zenk, David Zimmerer, Fabian Isensee, Paul F. Jäger, Jakob Wasserthal, Klaus H. Maier-Hein:
Realistic Evaluation of FixMatch on Imbalanced Medical Image Classification Tasks. Bildverarbeitung für die Medizin 2022: 291-296 - [c23]Thuy Nuong Tran, Fabian Isensee, Lars Kra mer, Amine Yamlahi, Tim Adler, Patrick Godau, Minu Tizabi, Lena Maier-Hein:
Heterogeneous Model Ensemble For Automatic Polyp Segmentation In Endoscopic Video Sequences. EndoCV@ISBI 2022: 20-24 - [c22]Gregor Köhler, Fabian Isensee, Klaus H. Maier-Hein:
A Noisy nnU-Net Student for Semi-supervised Abdominal Organ Segmentation. FLARE@MICCAI 2022: 128-138 - [c21]René Caspart, Sebastian Ziegler, Arvid Weyrauch, Holger Obermaier, Simon Raffeiner, Leon Pascal Schuhmacher, Jan Scholtyssek, Darya Trofimova, Marco Nolden, Ines Reinartz, Fabian Isensee, Markus Götz, Charlotte Debus:
Precise Energy Consumption Measurements of Heterogeneous Artificial Intelligence Workloads. ISC Workshops 2022: 108-121 - [e1]Nicholas Heller, Fabian Isensee, Darya Trofimova, Resha Tejpaul, Nikolaos Papanikolopoulos, Christopher Weight:
Kidney and Kidney Tumor Segmentation - MICCAI 2021 Challenge, KiTS 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Proceedings. Lecture Notes in Computer Science 13168, Springer 2022, ISBN 978-3-030-98384-0 [contents] - [i34]Lena Maier-Hein, Annika Reinke, Evangelia Christodoulou, Ben Glocker, Patrick Godau, Fabian Isensee, Jens Kleesiek, Michal Kozubek, Mauricio Reyes, Michael A. Riegler, Manuel Wiesenfarth, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, A. Emre Kavur, Tim Rädsch, Minu Dietlinde Tizabi, Laura Ación, Michela Antonelli, Tal Arbel, Spyridon Bakas, Peter Bankhead, Arriel Benis, M. Jorge Cardoso, Veronika Cheplygina, Beth A. Cimini, Gary S. Collins, Keyvan Farahani, Bram van Ginneken, Daniel A. Hashimoto, Michael M. Hoffman, Merel Huisman, Pierre Jannin, Charles E. Kahn, Alexandros Karargyris, Alan Karthikesalingam, Hannes Kenngott, Annette Kopp-Schneider, Anna Kreshuk, Tahsin M. Kurç, Bennett A. Landman, Geert Litjens, Amin Madani, Klaus H. Maier-Hein, Anne L. Martel, Peter Mattson, Erik Meijering, Bjoern H. Menze, David Moher, Karel G. M. Moons, Henning Müller, Felix Nickel, Brennan Nichyporuk, Jens Petersen, Nasir M. Rajpoot, Nicola Rieke, Julio Saez-Rodriguez, Clarisa Sánchez Gutiérrez, Shravya Shetty, Maarten van Smeden, Carole H. Sudre, Ronald M. Summers, Abdel A. Taha, Sotirios A. Tsaftaris, Ben Van Calster, Gaël Varoquaux, Paul F. Jäger:
Metrics reloaded: Pitfalls and recommendations for image analysis validation. CoRR abs/2206.01653 (2022) - [i33]Fabian Isensee, Constantin Ulrich, Tassilo Wald, Klaus H. Maier-Hein:
Extending nnU-Net is all you need. CoRR abs/2208.10791 (2022) - [i32]Sophie Ostmeier, Brian Axelrod, Jeroen Bertels, Fabian Isensee, Maarten G. Lansberg, Soren Christensen, Gregory W. Albers, Li-Jia Li, Jeremy J. Heit:
Evaluation of Medical Image Segmentation Models for Uncertain, Small or Empty Reference Annotations. CoRR abs/2209.13008 (2022) - [i31]René Caspart, Sebastian Ziegler, Arvid Weyrauch, Holger Obermaier, Simon Raffeiner, Leon Pascal Schuhmacher, Jan Scholtyssek, Darya Trofimova, Marco Nolden, Ines Reinartz, Fabian Isensee, Markus Götz, Charlotte Debus:
Precise Energy Consumption Measurements of Heterogeneous Artificial Intelligence Workloads. CoRR abs/2212.01698 (2022) - [i30]Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, Anubha Gupta, Jan Kybic, J. Alison Noble, Carlos Ortiz-de-Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett A. Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne L. Martel, et al.:
Biomedical image analysis competitions: The state of current participation practice. CoRR abs/2212.08568 (2022) - 2021
- [j8]Bjoern H. Menze, Fabian Isensee, Roland Wiest, Benedikt Wiestler, Klaus H. Maier-Hein, Mauricio Reyes, Spyridon Bakas:
Analyzing magnetic resonance imaging data from glioma patients using deep learning. Comput. Medical Imaging Graph. 88: 101828 (2021) - [j7]Nicholas Heller, Fabian Isensee, Klaus H. Maier-Hein, Xiaoshuai Hou, Chunmei Xie, Fengyi Li, Yang Nan, Guangrui Mu, Zhiyong Lin, Miofei Han, Guang Yao, Yaozong Gao, Yao Zhang, Yixin Wang, Feng Hou, Jiawei Yang, Guangwei Xiong, Jiang Tian, Christopher Weight:
The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 challenge. Medical Image Anal. 67: 101821 (2021) - [j6]A. Emre Kavur, Naciye Sinem Gezer, Mustafa Baris, Sinem Aslan, Pierre-Henri Conze, Vladimir Groza, Duc Duy Pham, Soumick Chatterjee, Philipp Ernst, Savas Özkan, Bora Baydar, Dmitry A. Lachinov, Shuo Han, Josef Pauli, Fabian Isensee, Matthias Perkonigg, Rachana Sathish, Ronnie Rajan, Debdoot Sheet, Gurbandurdy Dovletov, Oliver Speck, Andreas Nürnberger, Klaus H. Maier-Hein, Gözde B. Akar, Gözde B. Ünal, Oguz Dicle, M. Alper Selver:
CHAOS Challenge - combined (CT-MR) healthy abdominal organ segmentation. Medical Image Anal. 69: 101950 (2021) - [j5]Tobias Roß, Annika Reinke, Peter M. Full, Martin Wagner, Hannes Kenngott, Martin Apitz, Hellena Hempe, Diana Mîndroc-Filimon, Patrick Scholz, Thuy Nuong Tran, Pierangela Bruno, Pablo Arbeláez, Gui-Bin Bian, Sebastian Bodenstedt, Jon Lindström Bolmgren, Laura Bravo Sánchez, Hua-Bin Chen, Cristina González, Dong Guo, Pål Halvorsen, Pheng-Ann Heng, Enes Hosgor, Zeng-Guang Hou, Fabian Isensee, Debesh Jha, Tingting Jiang, Yueming Jin, Kadir Kirtaç, Sabrina Kletz, Stefan Leger, Zhixuan Li, Klaus H. Maier-Hein, Zhen-Liang Ni, Michael A. Riegler, Klaus Schoeffmann, Ruohua Shi, Stefanie Speidel, Michael Stenzel, Isabell Twick, Guotai Wang, Jiacheng Wang, Liansheng Wang, Lu Wang, Yujie Zhang, Yan-Jie Zhou, Lei Zhu, Manuel Wiesenfarth, Annette Kopp-Schneider, Beat P. Müller-Stich, Lena Maier-Hein:
Comparative validation of multi-instance instrument segmentation in endoscopy: Results of the ROBUST-MIS 2019 challenge. Medical Image Anal. 70: 101920 (2021) - [c20]Peter M. Full, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
Abstract: Studying Robustness of Semantic Segmentation under Domain Shift in Cardiac MRI. Bildverarbeitung für die Medizin 2021: 269 - [c19]Jens Petersen, Fabian Isensee, Gregor Köhler, Paul F. Jäger, David Zimmerer, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Vollmuth, Klaus H. Maier-Hein:
Continuous-Time Deep Glioma Growth Models. MICCAI (3) 2021: 83-92 - [c18]Michael Baumgartner, Paul F. Jäger, Fabian Isensee, Klaus H. Maier-Hein:
nnDetection: A Self-configuring Method for Medical Object Detection. MICCAI (5) 2021: 530-539 - [c17]Jens Petersen, Gregor Köhler, David Zimmerer, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
GP-ConvCNP: Better generalization for conditional convolutional Neural Processes on time series data. UAI 2021: 939-949 - [i29]Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes C. Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna P. Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze:
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient. CoRR abs/2103.06205 (2021) - [i28]Annika Reinke, Matthias Eisenmann, Minu Dietlinde Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin M. Kurç, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein:
Common Limitations of Image Processing Metrics: A Picture Story. CoRR abs/2104.05642 (2021) - [i27]Michael Baumgartner, Paul F. Jaeger, Fabian Isensee, Klaus H. Maier-Hein:
nnDetection: A Self-configuring Method for Medical Object Detection. CoRR abs/2106.00817 (2021) - [i26]Jens Petersen, Gregor Köhler, David Zimmerer, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
GP-ConvCNP: Better Generalization for Convolutional Conditional Neural Processes on Time Series Data. CoRR abs/2106.04967 (2021) - [i25]Michela Antonelli, Annika Reinke, Spyridon Bakas, Keyvan Farahani, Annette Kopp-Schneider, Bennett A. Landman, Geert Litjens, Bjoern H. Menze, Olaf Ronneberger, Ronald M. Summers, Bram van Ginneken, Michel Bilello, Patrick Bilic, Patrick Ferdinand Christ, Richard K. G. Do, Marc Gollub, Stephan Heckers, Henkjan J. Huisman, William R. Jarnagin, Maureen McHugo, Sandy Napel, Jennifer Goli-Pernicka, Kawal S. Rhode, Catalina Tobon-Gomez, Eugene Vorontsov, James A. Meakin, Sébastien Ourselin, Manuel Wiesenfarth, Pablo Arbelaez, Byeonguk Bae, Sihong Chen, Laura Alexandra Daza, Jianjiang Feng, Baochun He, Fabian Isensee, Yuanfeng Ji, Fucang Jia, Namkug Kim, Ildoo Kim, Dorit Merhof, Akshay Pai, BeomHee Park, Mathias Perslev, Ramin Rezaiifar, Oliver Rippel, Ignacio Sarasua, Wei Shen, Jaemin Son, Christian Wachinger, Liansheng Wang, Yan Wang, Yingda Xia, Daguang Xu, Zhanwei Xu, Yefeng Zheng, Amber L. Simpson, Lena Maier-Hein, M. Jorge Cardoso:
The Medical Segmentation Decathlon. CoRR abs/2106.05735 (2021) - [i24]Tobias Roß, Pierangela Bruno, Annika Reinke, Manuel Wiesenfarth, Lisa Koeppel, Peter M. Full, Bünyamin Pekdemir, Patrick Godau, Darya Trofimova, Fabian Isensee, Sara Moccia, Francesco Calimeri, Beat P. Müller-Stich, Annette Kopp-Schneider, Lena Maier-Hein:
How can we learn (more) from challenges? A statistical approach to driving future algorithm development. CoRR abs/2106.09302 (2021) - [i23]Jens Petersen, Fabian Isensee, Gregor Köhler, Paul F. Jäger, David Zimmerer, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Vollmuth, Klaus H. Maier-Hein:
Continuous-Time Deep Glioma Growth Models. CoRR abs/2106.12917 (2021) - [i22]Dameli Assalauova, Alexandr Ignatenko, Fabian Isensee, Sergey A. Bobkov, Darya Trofimova, Ivan A. Vartanyants:
Classification of diffraction patterns using a convolutional neural network in single particle imaging experiments performed at X-ray free-electron lasers. CoRR abs/2112.09020 (2021) - 2020
- [c16]David Zimmerer, Fabian Isensee, Jens Petersen, Simon Kohl, Klaus H. Maier-Hein:
Abstract: Unsupervised Anomaly Localization Using Variational Auto-Encoders. Bildverarbeitung für die Medizin 2020: 199 - [c15]Jens Petersen, Paul F. Jäger, Fabian Isensee, Simon A. A. Kohl, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Kickingereder, Klaus H. Maier-Hein:
Abstract: Deep Probabilistic Modeling of Glioma Growth. Bildverarbeitung für die Medizin 2020: 215 - [c14]Fabian Isensee, Paul F. Jäger, Peter M. Full, Philipp Vollmuth, Klaus H. Maier-Hein:
nnU-Net for Brain Tumor Segmentation. BrainLes@MICCAI (2) 2020: 118-132 - [c13]Peter M. Full, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
Studying Robustness of Semantic Segmentation Under Domain Shift in Cardiac MRI. M&Ms and EMIDEC/STACOM@MICCAI 2020: 238-249 - [i21]A. Emre Kavur, Naciye Sinem Gezer, Mustafa Baris, Pierre-Henri Conze, Vladimir Groza, Duc Duy Pham, Soumick Chatterjee, Philipp Ernst, Savas Özkan, Bora Baydar, Dmitry A. Lachinov, Shuo Han, Josef Pauli, Fabian Isensee, Matthias Perkonigg, Rachana Sathish, Ronnie Rajan, Sinem Aslan, Debdoot Sheet, Gurbandurdy Dovletov, Oliver Speck, Andreas Nürnberger, Klaus H. Maier-Hein, Gözde B. Akar, Gözde B. Ünal, Oguz Dicle, M. Alper Selver:
CHAOS Challenge - Combined (CT-MR) Healthy Abdominal Organ Segmentation. CoRR abs/2001.06535 (2020) - [i20]Tobias Roß, Annika Reinke, Peter M. Full, Martin Wagner, Hannes Kenngott, Martin Apitz, Hellena Hempe, Diana Mîndroc-Filimon, Patrick Scholz, Thuy Nuong Tran, Pierangela Bruno, Pablo Arbeláez, Gui-Bin Bian, Sebastian Bodenstedt, Jon Lindström Bolmgren, Laura Bravo Sánchez, Hua-Bin Chen, Cristina González, Dong Guo, Pål Halvorsen, Pheng-Ann Heng, Enes Hosgor, Zeng-Guang Hou, Fabian Isensee, Debesh Jha, Tingting Jiang, Yueming Jin, Kadir Kirtaç, Sabrina Kletz, Stefan Leger, Zhixuan Li, Klaus H. Maier-Hein, Zhen-Liang Ni, Michael A. Riegler, Klaus Schoeffmann, Ruohua Shi, Stefanie Speidel, Michael Stenzel, Isabell Twick, Guotai Wang, Jiacheng Wang, Liansheng Wang, Lu Wang, Yujie Zhang, Yan-Jie Zhou, Lei Zhu, Manuel Wiesenfarth, Annette Kopp-Schneider, Beat Peter Müller-Stich, Lena Maier-Hein:
Robust Medical Instrument Segmentation Challenge 2019. CoRR abs/2003.10299 (2020) - [i19]Fabian Isensee, Klaus H. Maier-Hein:
OR-UNet: an Optimized Robust Residual U-Net for Instrument Segmentation in Endoscopic Images. CoRR abs/2004.12668 (2020) - [i18]Fabian Isensee, Paul F. Jaeger, Peter M. Full, Philipp Vollmuth, Klaus H. Maier-Hein:
nnU-Net for Brain Tumor Segmentation. CoRR abs/2011.00848 (2020) - [i17]Peter M. Full, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
Studying Robustness of Semantic Segmentation under Domain Shift in cardiac MRI. CoRR abs/2011.07592 (2020)
2010 – 2019
- 2019
- [j4]Sarina Thomas, Fabian Isensee, Simon Kohl, Maxim Privalov, Nils Beisemann, Benedict Swartman, Holger Keil, Sven Yves Vetter, Jochen Franke, Paul Alfred Grützner, Lena Maier-Hein, Marco Nolden, Klaus H. Maier-Hein:
Computer-assisted intra-operative verification of surgical outcome for the treatment of syndesmotic injuries through contralateral side comparison. Int. J. Comput. Assist. Radiol. Surg. 14(12): 2211-2220 (2019) - [c12]Fabian Isensee, Jens Petersen, André Klein, David Zimmerer, Paul F. Jaeger, Simon Kohl, Jakob Wasserthal, Gregor Köhler, Tobias Norajitra, Sebastian J. Wirkert, Klaus H. Maier-Hein:
Abstract: nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation. Bildverarbeitung für die Medizin 2019: 22 - [c11]Tobias Stein, Jasmin Metzger, Jonas Scherer, Fabian Isensee, Tobias Norajitra, Jens Kleesiek, Klaus H. Maier-Hein, Marco Nolden:
Efficient Web-Based Review for Automatic Segmentation of Volumetric DICOM Images. Bildverarbeitung für die Medizin 2019: 158-163 - [c10]David Zimmerer, Fabian Isensee, Jens Petersen, Simon Kohl, Klaus H. Maier-Hein:
Unsupervised Anomaly Localization Using Variational Auto-Encoders. MICCAI (4) 2019: 289-297 - [c9]Jens Petersen, Paul F. Jäger, Fabian Isensee, Simon A. A. Kohl, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Kickingereder, Klaus H. Maier-Hein:
Deep Probabilistic Modeling of Glioma Growth. MICCAI (2) 2019: 806-814 - [c8]Paul F. Jaeger, Simon A. A. Kohl, Sebastian Bickelhaupt, Fabian Isensee, Tristan Anselm Kuder, Heinz-Peter Schlemmer, Klaus H. Maier-Hein:
Retina U-Net: Embarrassingly Simple Exploitation of Segmentation Supervision for Medical Object Detection. ML4H@NeurIPS 2019: 171-183 - [i16]Fabian Isensee, Marianne Schell, Irada Tursunova, Gianluca Brugnara, David Bonekamp, Ulf Neuberger, Antje Wick, Heinz-Peter Schlemmer, Sabine Heiland, Wolfgang Wick, Martin Bendszus, Klaus Hermann Maier-Hein, Philipp Kickingereder:
Automated brain extraction of multi-sequence MRI using artificial neural networks. CoRR abs/1901.11341 (2019) - [i15]Fabian Isensee, Jens Petersen, Simon A. A. Kohl, Paul F. Jäger, Klaus H. Maier-Hein:
nnU-Net: Breaking the Spell on Successful Medical Image Segmentation. CoRR abs/1904.08128 (2019) - [i14]David Zimmerer, Fabian Isensee, Jens Petersen, Simon Kohl, Klaus H. Maier-Hein:
Unsupervised Anomaly Localization using Variational Auto-Encoders. CoRR abs/1907.02796 (2019) - [i13]Jens Petersen, Paul F. Jäger, Fabian Isensee, Simon A. A. Kohl, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Kickingereder, Klaus H. Maier-Hein:
Deep Probabilistic Modeling of Glioma Growth. CoRR abs/1907.04064 (2019) - [i12]Fabian Isensee, Klaus H. Maier-Hein:
An attempt at beating the 3D U-Net. CoRR abs/1908.02182 (2019) - [i11]Ahmed Hosny, Michael Schwier, Christoph Berger, Evin Pinar Örnek, Mehmet Turan, Phi V. Tran, Leon Weninger, Fabian Isensee, Klaus H. Maier-Hein, Richard McKinley, Michael T. Lu, Udo Hoffmann, Bjoern H. Menze, Spyridon Bakas, Andriy Fedorov, Hugo J. W. L. Aerts:
ModelHub.AI: Dissemination Platform for Deep Learning Models. CoRR abs/1911.13218 (2019) - [i10]Nicholas Heller, Fabian Isensee, Klaus H. Maier-Hein, Xiaoshuai Hou, Chunmei Xie, Fengyi Li, Yang Nan, Guangrui Mu, Zhiyong Lin, Miofei Han, Guang Yao, Yaozong Gao, Yao Zhang, Yixin Wang, Feng Hou, Jiawei Yang, Guangwei Xiong, Jiang Tian, Cheng Zhong, Jun Ma, Jack Rickman, Joshua Dean, Bethany Stai, Resha Tejpaul, Makinna Oestreich, Paul Blake, Heather Kaluzniak, Shaneabbas Raza, Joel Rosenberg, Keenan Moore, Edward Walczak, Zachary Rengel, Zachary Edgerton, Ranveer Vasdev, Matthew Peterson, Seán McSweeney, Sarah Peterson, Arveen Kalapara, Niranjan Sathianathen, Christopher Weight, Nikolaos Papanikolopoulos:
The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 Challenge. CoRR abs/1912.01054 (2019) - 2018
- [j3]Tobias Roß, David Zimmerer, Anant Suraj Vemuri, Fabian Isensee, Manuel Wiesenfarth, Sebastian Bodenstedt, Fabian Both, Philip Kessler, Martin Wagner, Beat Müller, Hannes Kenngott, Stefanie Speidel, Annette Kopp-Schneider, Klaus H. Maier-Hein, Lena Maier-Hein:
Exploiting the potential of unlabeled endoscopic video data with self-supervised learning. Int. J. Comput. Assist. Radiol. Surg. 13(6): 925-933 (2018) - [j2]Eric Heim, Alexander Seitel, Jonas Andrulis, Fabian Isensee, Christian Stock, Tobias Roß, Lena Maier-Hein:
Clickstream Analysis for Crowd-Based Object Segmentation with Confidence. IEEE Trans. Pattern Anal. Mach. Intell. 40(12): 2814-2826 (2018) - [j1]Olivier Bernard, Alain Lalande, Clément Zotti, Frederic Cervenansky, Xin Yang, Pheng-Ann Heng, Irem Cetin, Karim Lekadir, Oscar Camara, Miguel Ángel González Ballester, Gerard Sanroma, Sandy Napel, Steffen E. Petersen, Georgios Tziritas, Elias Grinias, Mahendra Khened, Alex Varghese, Ganapathy Krishnamurthi, Marc-Michel Rohé, Xavier Pennec, Maxime Sermesant, Fabian Isensee, Paul Jaeger, Klaus H. Maier-Hein, Peter M. Full, Ivo Wolf, Sandy Engelhardt, Christian F. Baumgartner, Lisa M. Koch, Jelmer M. Wolterink, Ivana Isgum, Yeonggul Jang, Yoonmi Hong, Jay Patravali, Shubham Jain, Olivier Humbert, Pierre-Marc Jodoin:
Deep Learning Techniques for Automatic MRI Cardiac Multi-Structures Segmentation and Diagnosis: Is the Problem Solved? IEEE Trans. Medical Imaging 37(11): 2514-2525 (2018) - [c7]Paul Jäger, Fabian Isensee, Jens Petersen, David Zimmerer, Jakob Wasserthal, Klaus Hermann Maier-Hein:
Advanced Deep Learning Methods. Bildverarbeitung für die Medizin 2018: 6 - [c6]Dominik Waibel, Janek Gröhl, Fabian Isensee, Klaus Hermann Maier-Hein, Lena Maier-Hein:
Abstract: Rekonstruktion der initialen Druckverteilung photoakustischer Bilder mit limitiertem Blickwinkel durch maschinelle Lernverfahren. Bildverarbeitung für die Medizin 2018: 201 - [c5]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
No New-Net. BrainLes@MICCAI (2) 2018: 234-244 - [i9]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge. CoRR abs/1802.10508 (2018) - [i8]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
No New-Net. CoRR abs/1809.10483 (2018) - [i7]Fabian Isensee, Jens Petersen, André Klein, David Zimmerer, Paul F. Jaeger, Simon Kohl, Jakob Wasserthal, Gregor Köhler, Tobias Norajitra, Sebastian J. Wirkert, Klaus H. Maier-Hein:
nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation. CoRR abs/1809.10486 (2018) - [i6]Paul F. Jaeger, Simon A. A. Kohl, Sebastian Bickelhaupt, Fabian Isensee, Tristan Anselm Kuder, Heinz-Peter Schlemmer, Klaus H. Maier-Hein:
Retina U-Net: Embarrassingly Simple Exploitation of Segmentation Supervision for Medical Object Detection. CoRR abs/1811.08661 (2018) - [i5]David Zimmerer, Simon A. A. Kohl, Jens Petersen, Fabian Isensee, Klaus H. Maier-Hein:
Context-encoding Variational Autoencoder for Unsupervised Anomaly Detection. CoRR abs/1812.05941 (2018) - 2017
- [c4]Vincent Christlein, Florin C. Ghesu, Tobias Würfl, Andreas K. Maier, Fabian Isensee, Peter F. Neher, Klaus H. Maier-Hein:
Tutorial: Deep Learning Advancing the State-of-the-Art in Medical Image Analysis. Bildverarbeitung für die Medizin 2017: 6-7 - [c3]Fabian Isensee, Philipp Kickingereder, David Bonekamp, Martin Bendszus, Wolfgang Wick, Heinz-Peter Schlemmer, Klaus H. Maier-Hein:
Brain Tumor Segmentation Using Large Receptive Field Deep Convolutional Neural Networks. Bildverarbeitung für die Medizin 2017: 86-91 - [c2]Fabian Isensee, Paul F. Jaeger, Peter M. Full, Ivo Wolf, Sandy Engelhardt, Klaus H. Maier-Hein:
Automatic Cardiac Disease Assessment on cine-MRI via Time-Series Segmentation and Domain Specific Features. STACOM@MICCAI 2017: 120-129 - [c1]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge. BrainLes@MICCAI 2017: 287-297 - [i4]Jakob Wasserthal, Peter F. Neher, Fabian Isensee, Klaus H. Maier-Hein:
Direct White Matter Bundle Segmentation using Stacked U-Nets. CoRR abs/1703.02036 (2017) - [i3]Fabian Isensee, Paul Jaeger, Peter M. Full, Ivo Wolf, Sandy Engelhardt, Klaus H. Maier-Hein:
Automatic Cardiac Disease Assessment on cine-MRI via Time-Series Segmentation and Domain Specific Features. CoRR abs/1707.00587 (2017) - [i2]Tobias Roß, David Zimmerer, Anant Suraj Vemuri, Fabian Isensee, Sebastian Bodenstedt, Fabian Both, Philip Kessler, Martin Wagner, Beat Müller, Hannes Kenngott, Stefanie Speidel, Klaus H. Maier-Hein, Lena Maier-Hein:
Exploiting the potential of unlabeled endoscopic video data with self-supervised learning. CoRR abs/1711.09726 (2017) - 2016
- [i1]Eric Heim, Alexander Seitel, Christian Stock, Fabian Isensee, Lena Maier-Hein:
Clickstream analysis for crowd-based object segmentation with confidence. CoRR abs/1611.08527 (2016)