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ORCIDFabian Isensee
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2020 – today
- 2021
[j8]Bjoern H. Menze, Fabian Isensee, Roland Wiest, Benedikt Wiestler, Klaus H. Maier-Hein, Mauricio Reyes, Spyridon Bakas:
Analyzing magnetic resonance imaging data from glioma patients using deep learning. Comput. Medical Imaging Graph. 88: 101828 (2021)- [j7]Nicholas Heller, Fabian Isensee, Klaus H. Maier-Hein, Xiaoshuai Hou, Chunmei Xie, Fengyi Li, Yang Nan, Guangrui Mu, Zhiyong Lin, Miofei Han, Guang Yao, Yaozong Gao
, Yao Zhang, Yixin Wang, Feng Hou, Jiawei Yang, Guangwei Xiong, Jiang Tian, Christopher Weight:
The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 challenge. Medical Image Anal. 67: 101821 (2021) - [j6]A. Emre Kavur, Naciye Sinem Gezer, Mustafa Baris, Sinem Aslan, Pierre-Henri Conze, Vladimir Groza, Duc Duy Pham, Soumick Chatterjee, Philipp Ernst, Savas Özkan, Bora Baydar, Dmitry Lachinov, Shuo Han, Josef Pauli, Fabian Isensee, Matthias Perkonigg, Rachana Sathish, Ronnie Rajan, M. Alper Selver:
CHAOS Challenge - combined (CT-MR) healthy abdominal organ segmentation. Medical Image Anal. 69: 101950 (2021) - [j5]Tobias Roß, Annika Reinke, Peter M. Full, Martin Wagner, Hannes Kenngott, Martin Apitz, Hellena Hempe, Diana Mindroc Filimon, Patrick Scholz, Thuy Nuong Tran, Pierangela Bruno, Pablo Arbeláez, Gui-Bin Bian, Sebastian Bodenstedt, Jon Lindström Bolmgren, Laura Bravo Sánchez, Hua-Bin Chen, Cristina González, Dong Guo, Pål Halvorsen, Pheng-Ann Heng, Enes Hosgor, Zeng-Guang Hou, Fabian Isensee, Debesh Jha, Tingting Jiang, Yueming Jin, Kadir Kirtaç, Sabrina Kletz, Stefan Leger, Zhixuan Li, Klaus H. Maier-Hein, Zhen-Liang Ni, Michael A. Riegler, Klaus Schoeffmann, Ruohua Shi, Stefanie Speidel, Michael Stenzel, Isabell Twick, Guotai Wang, Jiacheng Wang, Liansheng Wang, Lu Wang, Yujie Zhang, Yan-Jie Zhou, Lei Zhu, Manuel Wiesenfarth, Annette Kopp-Schneider, Beat P. Müller-Stich, Lena Maier-Hein:
Comparative validation of multi-instance instrument segmentation in endoscopy: Results of the ROBUST-MIS 2019 challenge. Medical Image Anal. 70: 101920 (2021) - [c17]Peter M. Full, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
Abstract: Studying Robustness of Semantic Segmentation under Domain Shift in Cardiac MRI. Bildverarbeitung für die Medizin 2021: 269 - [i24]Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes C. Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze:
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient. CoRR abs/2103.06205 (2021) - [i23]Annika Reinke, Matthias Eisenmann, Minu Dietlinde Tizabi, Carole H. Sudre, Tim Rädsch, Michela Antonelli, Tal Arbel, Spyridon Bakas, M. Jorge Cardoso, Veronika Cheplygina, Keyvan Farahani, Ben Glocker, Doreen Heckmann-Nötzel, Fabian Isensee, Pierre Jannin, Charles E. Kahn, Jens Kleesiek, Tahsin M. Kurç, Michal Kozubek, Bennett A. Landman, Geert Litjens, Klaus H. Maier-Hein, Bjoern H. Menze, Henning Müller, Jens Petersen, Mauricio Reyes, Nicola Rieke, Bram Stieltjes, Ronald M. Summers, Sotirios A. Tsaftaris, Bram van Ginneken, Annette Kopp-Schneider, Paul Jäger, Lena Maier-Hein:
Common Limitations of Image Processing Metrics: A Picture Story. CoRR abs/2104.05642 (2021) - [i22]Michael Baumgartner, Paul F. Jaeger, Fabian Isensee, Klaus H. Maier-Hein:
nnDetection: A Self-configuring Method for Medical Object Detection. CoRR abs/2106.00817 (2021) - 2020
- [c16]David Zimmerer, Fabian Isensee, Jens Petersen, Simon Kohl, Klaus H. Maier-Hein:
Abstract: Unsupervised Anomaly Localization Using Variational Auto-Encoders. Bildverarbeitung für die Medizin 2020: 199 - [c15]Jens Petersen, Paul F. Jäger, Fabian Isensee, Simon A. A. Kohl, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Kickingereder, Klaus H. Maier-Hein:
Abstract: Deep Probabilistic Modeling of Glioma Growth. Bildverarbeitung für die Medizin 2020: 215 - [c14]Fabian Isensee, Paul F. Jäger, Peter M. Full, Philipp Vollmuth, Klaus H. Maier-Hein:
nnU-Net for Brain Tumor Segmentation. BrainLes@MICCAI (2) 2020: 118-132 - [c13]Peter M. Full, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
Studying Robustness of Semantic Segmentation Under Domain Shift in Cardiac MRI. M&Ms and EMIDEC/STACOM@MICCAI 2020: 238-249 - [i21]A. Emre Kavur, Naciye Sinem Gezer, Mustafa Baris, Pierre-Henri Conze, Vladimir Groza, Duc Duy Pham, Soumick Chatterjee, Philipp Ernst, Savas Özkan, Bora Baydar, Dmitry Lachinov, Shuo Han, Josef Pauli, Fabian Isensee, Matthias Perkonigg, Rachana Sathish, Ronnie Rajan, Sinem Aslan, Debdoot Sheet, Gurbandurdy Dovletov, Oliver Speck, Andreas Nürnberger, Klaus H. Maier-Hein, Gözde B. Akar, Gözde B. Ünal, Oguz Dicle, M. Alper Selver:
CHAOS Challenge - Combined (CT-MR) Healthy Abdominal Organ Segmentation. CoRR abs/2001.06535 (2020) - [i20]Tobias Roß, Annika Reinke, Peter M. Full, Martin Wagner, Hannes Kenngott, Martin Apitz, Hellena Hempe, Diana Mindroc Filimon, Patrick Scholz, Thuy Nuong Tran, Pierangela Bruno, Pablo Arbeláez, Gui-Bin Bian, Sebastian Bodenstedt, Jon Lindström Bolmgren, Laura Bravo Sánchez, Hua-Bin Chen, Cristina González, Dong Guo, Pål Halvorsen, Pheng-Ann Heng, Enes Hosgor, Zeng-Guang Hou, Fabian Isensee, Debesh Jha, Tingting Jiang, Yueming Jin, Kadir Kirtaç, Sabrina Kletz, Stefan Leger, Zhixuan Li, Klaus H. Maier-Hein, Zhen-Liang Ni, Michael A. Riegler, Klaus Schoeffmann, Ruohua Shi, Stefanie Speidel, Michael Stenzel, Isabell Twick, Guotai Wang, Jiacheng Wang, Liansheng Wang, Lu Wang, Yujie Zhang, Yan-Jie Zhou, Lei Zhu, Manuel Wiesenfarth, Annette Kopp-Schneider, Beat Peter Müller-Stich, Lena Maier-Hein:
Robust Medical Instrument Segmentation Challenge 2019. CoRR abs/2003.10299 (2020) - [i19]Fabian Isensee, Klaus H. Maier-Hein:
OR-UNet: an Optimized Robust Residual U-Net for Instrument Segmentation in Endoscopic Images. CoRR abs/2004.12668 (2020) - [i18]Fabian Isensee, Paul F. Jaeger, Peter M. Full, Philipp Vollmuth, Klaus H. Maier-Hein:
nnU-Net for Brain Tumor Segmentation. CoRR abs/2011.00848 (2020) - [i17]Peter M. Full, Fabian Isensee, Paul F. Jäger, Klaus H. Maier-Hein:
Studying Robustness of Semantic Segmentation under Domain Shift in cardiac MRI. CoRR abs/2011.07592 (2020)
2010 – 2019
- 2019
- [j4]Sarina Thomas, Fabian Isensee, Simon Kohl, Maxim Privalov, Nils Beisemann, Benedict Swartman, Holger Keil, Sven Yves Vetter, Jochen Franke, Paul Alfred Grützner, Lena Maier-Hein, Marco Nolden, Klaus H. Maier-Hein:
Computer-assisted intra-operative verification of surgical outcome for the treatment of syndesmotic injuries through contralateral side comparison. Int. J. Comput. Assist. Radiol. Surg. 14(12): 2211-2220 (2019) - [c12]Fabian Isensee, Jens Petersen, André Klein, David Zimmerer, Paul F. Jaeger, Simon Kohl, Jakob Wasserthal, Gregor Koehler, Tobias Norajitra, Sebastian J. Wirkert, Klaus H. Maier-Hein:
Abstract: nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation. Bildverarbeitung für die Medizin 2019: 22 - [c11]Tobias Stein, Jasmin Metzger, Jonas Scherer, Fabian Isensee, Tobias Norajitra, Jens Kleesiek, Klaus H. Maier-Hein, Marco Nolden:
Efficient Web-Based Review for Automatic Segmentation of Volumetric DICOM Images. Bildverarbeitung für die Medizin 2019: 158-163 - [c10]David Zimmerer, Fabian Isensee, Jens Petersen, Simon Kohl, Klaus H. Maier-Hein:
Unsupervised Anomaly Localization Using Variational Auto-Encoders. MICCAI (4) 2019: 289-297 - [c9]Jens Petersen, Paul F. Jäger, Fabian Isensee, Simon A. A. Kohl, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Kickingereder, Klaus H. Maier-Hein:
Deep Probabilistic Modeling of Glioma Growth. MICCAI (2) 2019: 806-814 - [c8]Paul F. Jaeger, Simon A. A. Kohl, Sebastian Bickelhaupt, Fabian Isensee, Tristan Anselm Kuder, Heinz-Peter Schlemmer, Klaus H. Maier-Hein:
Retina U-Net: Embarrassingly Simple Exploitation of Segmentation Supervision for Medical Object Detection. ML4H@NeurIPS 2019: 171-183 - [i16]Fabian Isensee, Marianne Schell, Irada Tursunova, Gianluca Brugnara, David Bonekamp, Ulf Neuberger, Antje Wick, Heinz-Peter Schlemmer, Sabine Heiland, Wolfgang Wick, Martin Bendszus, Klaus Hermann Maier-Hein, Philipp Kickingereder:
Automated brain extraction of multi-sequence MRI using artificial neural networks. CoRR abs/1901.11341 (2019) - [i15]Fabian Isensee, Jens Petersen, Simon A. A. Kohl, Paul F. Jäger, Klaus H. Maier-Hein:
nnU-Net: Breaking the Spell on Successful Medical Image Segmentation. CoRR abs/1904.08128 (2019) - [i14]David Zimmerer, Fabian Isensee, Jens Petersen, Simon Kohl, Klaus H. Maier-Hein:
Unsupervised Anomaly Localization using Variational Auto-Encoders. CoRR abs/1907.02796 (2019) - [i13]Jens Petersen, Paul F. Jäger, Fabian Isensee, Simon A. A. Kohl, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Kickingereder, Klaus H. Maier-Hein:
Deep Probabilistic Modeling of Glioma Growth. CoRR abs/1907.04064 (2019) - [i12]Fabian Isensee, Klaus H. Maier-Hein:
An attempt at beating the 3D U-Net. CoRR abs/1908.02182 (2019) - [i11]Ahmed Hosny, Michael Schwier, Christoph Berger, Evin Pinar Örnek, Mehmet Turan, Phi V. Tran, Leon Weninger, Fabian Isensee, Klaus H. Maier-Hein, Richard McKinley, Michael T. Lu, Udo Hoffmann, Bjoern H. Menze, Spyridon Bakas, Andriy Fedorov, Hugo J. W. L. Aerts:
ModelHub.AI: Dissemination Platform for Deep Learning Models. CoRR abs/1911.13218 (2019) - [i10]Nicholas Heller, Fabian Isensee, Klaus H. Maier-Hein, Xiaoshuai Hou, Chunmei Xie, Fengyi Li, Yang Nan, Guangrui Mu, Zhiyong Lin, Miofei Han, Guang Yao, Yaozong Gao, Yao Zhang, Yixin Wang, Feng Hou, Jiawei Yang, Guangwei Xiong, Jiang Tian, Cheng Zhong, Jun Ma, Jack Rickman, Joshua Dean, Bethany Stai, Resha Tejpaul, Makinna Oestreich, Paul Blake, Heather Kaluzniak, Shaneabbas Raza, Joel Rosenberg, Keenan Moore, Edward Walczak, Zachary Rengel, Zachary Edgerton, Ranveer Vasdev, Matthew Peterson, Seán McSweeney, Sarah Peterson, Arveen Kalapara, Niranjan Sathianathen, Christopher Weight, Nikolaos Papanikolopoulos:
The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 Challenge. CoRR abs/1912.01054 (2019) - 2018
- [j3]Tobias Roß, David Zimmerer, Anant Suraj Vemuri, Fabian Isensee, Manuel Wiesenfarth, Sebastian Bodenstedt, Fabian Both, Philip Kessler, Martin Wagner, Beat Müller, Hannes Kenngott, Stefanie Speidel, Annette Kopp-Schneider, Klaus H. Maier-Hein, Lena Maier-Hein:
Exploiting the potential of unlabeled endoscopic video data with self-supervised learning. Int. J. Comput. Assist. Radiol. Surg. 13(6): 925-933 (2018) - [j2]Eric Heim, Alexander Seitel, Jonas Andrulis, Fabian Isensee, Christian Stock, Tobias Roß, Lena Maier-Hein:
Clickstream Analysis for Crowd-Based Object Segmentation with Confidence. IEEE Trans. Pattern Anal. Mach. Intell. 40(12): 2814-2826 (2018) - [j1]Olivier Bernard, Alain Lalande, Clément Zotti, Frederic Cervenansky, Xin Yang, Pheng-Ann Heng, Irem Cetin, Karim Lekadir, Oscar Camara, Miguel Ángel González Ballester, Gerard Sanroma, Sandy Napel, Steffen E. Petersen, Georgios Tziritas, Elias Grinias, Mahendra Khened, Alex Varghese, Ganapathy Krishnamurthi, Marc-Michel Rohé, Xavier Pennec, Maxime Sermesant, Fabian Isensee, Paul Jaeger, Klaus H. Maier-Hein, Peter M. Full, Ivo Wolf, Sandy Engelhardt, Christian F. Baumgartner, Lisa M. Koch, Jelmer M. Wolterink, Ivana Isgum, Yeonggul Jang, Yoonmi Hong, Jay Patravali, Shubham Jain, Olivier Humbert, Pierre-Marc Jodoin:
Deep Learning Techniques for Automatic MRI Cardiac Multi-Structures Segmentation and Diagnosis: Is the Problem Solved? IEEE Trans. Medical Imaging 37(11): 2514-2525 (2018) - [c7]Paul Jäger, Fabian Isensee, Jens Petersen, David Zimmerer, Jakob Wasserthal, Klaus Hermann Maier-Hein:
Advanced Deep Learning Methods. Bildverarbeitung für die Medizin 2018: 6 - [c6]Dominik Waibel, Janek Gröhl, Fabian Isensee, Klaus Hermann Maier-Hein, Lena Maier-Hein:
Abstract: Rekonstruktion der initialen Druckverteilung photoakustischer Bilder mit limitiertem Blickwinkel durch maschinelle Lernverfahren. Bildverarbeitung für die Medizin 2018: 201 - [c5]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
No New-Net. BrainLes@MICCAI (2) 2018: 234-244 - [i9]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge. CoRR abs/1802.10508 (2018) - [i8]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
No New-Net. CoRR abs/1809.10483 (2018) - [i7]Fabian Isensee, Jens Petersen, André Klein, David Zimmerer, Paul F. Jaeger, Simon Kohl, Jakob Wasserthal, Gregor Koehler, Tobias Norajitra, Sebastian J. Wirkert, Klaus H. Maier-Hein:
nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation. CoRR abs/1809.10486 (2018) - [i6]Paul F. Jaeger, Simon A. A. Kohl, Sebastian Bickelhaupt, Fabian Isensee, Tristan Anselm Kuder, Heinz-Peter Schlemmer, Klaus H. Maier-Hein:
Retina U-Net: Embarrassingly Simple Exploitation of Segmentation Supervision for Medical Object Detection. CoRR abs/1811.08661 (2018) - [i5]David Zimmerer, Simon A. A. Kohl, Jens Petersen, Fabian Isensee, Klaus H. Maier-Hein:
Context-encoding Variational Autoencoder for Unsupervised Anomaly Detection. CoRR abs/1812.05941 (2018) - 2017
- [c4]Vincent Christlein, Florin C. Ghesu, Tobias Würfl, Andreas K. Maier, Fabian Isensee, Peter F. Neher, Klaus H. Maier-Hein:
Tutorial: Deep Learning Advancing the State-of-the-Art in Medical Image Analysis. Bildverarbeitung für die Medizin 2017: 6-7 - [c3]Fabian Isensee, Philipp Kickingereder, David Bonekamp, Martin Bendszus, Wolfgang Wick, Heinz-Peter Schlemmer, Klaus H. Maier-Hein:
Brain Tumor Segmentation Using Large Receptive Field Deep Convolutional Neural Networks. Bildverarbeitung für die Medizin 2017: 86-91 - [c2]Fabian Isensee, Paul F. Jaeger, Peter M. Full, Ivo Wolf, Sandy Engelhardt, Klaus H. Maier-Hein:
Automatic Cardiac Disease Assessment on cine-MRI via Time-Series Segmentation and Domain Specific Features. STACOM@MICCAI 2017: 120-129 - [c1]Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein:
Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge. BrainLes@MICCAI 2017: 287-297 - [i4]Jakob Wasserthal, Peter F. Neher, Fabian Isensee, Klaus H. Maier-Hein:
Direct White Matter Bundle Segmentation using Stacked U-Nets. CoRR abs/1703.02036 (2017) - [i3]Fabian Isensee, Paul Jaeger, Peter M. Full, Ivo Wolf, Sandy Engelhardt, Klaus H. Maier-Hein:
Automatic Cardiac Disease Assessment on cine-MRI via Time-Series Segmentation and Domain Specific Features. CoRR abs/1707.00587 (2017) - [i2]Tobias Roß, David Zimmerer, Anant Suraj Vemuri, Fabian Isensee, Sebastian Bodenstedt, Fabian Both, Philip Kessler, Martin Wagner, Beat Müller, Hannes Kenngott, Stefanie Speidel, Klaus H. Maier-Hein, Lena Maier-Hein:
Exploiting the potential of unlabeled endoscopic video data with self-supervised learning. CoRR abs/1711.09726 (2017) - 2016
- [i1]Eric Heim, Alexander Seitel, Christian Stock, Fabian Isensee, Lena Maier-Hein:
Clickstream analysis for crowd-based object segmentation with confidence. CoRR abs/1611.08527 (2016)
Coauthor Index
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