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James Richard Perkins

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2020 – today

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2023
[j6]
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  - journals/jbi/MonterdeRCSPMR23
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Beatriz Monterde, Elena Rojano, José Córdoba-Caballero, Pedro Seoane, James Richard Perkins, Miguel Ángel Medina, Juan A. G. Ranea:
Integrating differential expression, co-expression and gene network analysis for the identification of common genes associated with tumor angiogenesis deregulation. J. Biomed. Informatics 144: 104421 (2023)
2022
[j5]
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  - journals/bmcbi/RojanoJPCGSORS22
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Elena Rojano, Fernando Moreno Jabato, James Richard Perkins, José Córdoba-Caballero, Federico García-Criado, Ian Sillitoe, Christine A. Orengo, Juan A. G. Ranea, Pedro Seoane-Zonjic:
Assigning protein function from domain-function associations using DomFun. BMC Bioinform. 23(1): 43 (2022)
2020
[c6]
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  - conf/iwbbio/JabatoRPGS20
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Fernando Moreno Jabato, Elena Rojano, James Richard Perkins, Juan Antonio Garcia-Ranea, Pedro Seoane-Zonjic:
Kernel Based Approaches to Identify Hidden Connections in Gene Networks Using NetAnalyzer. IWBBIO 2020: 763-774
[c5]
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Elena Rojano, Pedro Seoane-Zonjic, Fernando Moreno Jabato, James Richard Perkins, Juan A. G. Ranea:
Comprehensive Analysis of Patients with Undiagnosed Genetic Diseases Using the Patient Exploration Tools Suite (PETS). IWBBIO 2020: 775-786

2010 – 2019

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2019
[j4]
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Elena Rojano, Pedro Seoane, Juan A. G. Ranea, James Richard Perkins:
Regulatory variants: from detection to predicting impact. Briefings Bioinform. 20(5): 1639-1654 (2019)
[c4]
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Elena Rojano, James Richard Perkins, Ian Sillitoe, Christine A. Orengo, Juan Antonio Garcia-Ranea, Pedro Seoane:
Associating Protein Domains with Biological Functions: A Tripartite Network Approach. IWBBIO (2) 2019: 155-164
2017
[j3]
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  - journals/eaai/UptonBCP17
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Alex Upton, Miguel Blanca, José Antonio Cornejo-García, James Richard Perkins:
Weighted Epistatic Analysis of NSAIDs Hypersensitivity Data. Eng. Appl. Artif. Intell. 62: 312-319 (2017)
[c3]
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Elena Rojano, Pedro Seoane, Anibal Bueno-Amoros, James Richard Perkins, Juan Antonio Garcia-Ranea:
Revealing the Relationship Between Human Genome Regions and Pathological Phenotypes Through Network Analysis. IWBBIO (1) 2017: 197-207
2016
[j2]
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  - journals/bib/UptonTCP16
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Alex Upton, Oswaldo Trelles, José Antonio Cornejo-García, James Richard Perkins:
Review: High-performance computing to detect epistasis in genome scale data sets. Briefings Bioinform. 17(3): 368-379 (2016)
2015
[c2]
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  - conf/iccS/UptonTP15
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Alex Upton, Oswaldo Trelles, James Richard Perkins:
Epistatic Analysis of Clarkson Disease. ICCS 2015: 725-734
2014
[c1]
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  - conf/closer/HeinzlreiterPTKRMBT14
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Paul Heinzlreiter, James Richard Perkins, Óscar Torreño Tirado, Tor Johan Mikael Karlsson, Juan Antonio Ranea, Andreas Mitterecker, Miguel Blanca, Oswaldo Trelles:
A Cloud-based GWAS Analysis Pipeline for Clinical Researchers. CLOSER 2014: 387-394
2012
[j1]
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  - journals/nar/LeesYPSRDO12
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Jonathan G. Lees, Corin Yeats, James Richard Perkins, Ian Sillitoe, Robert Rentzsch, Benoit H. Dessailly, Christine A. Orengo:
Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis. Nucleic Acids Res. 40(Database-Issue): 465-471 (2012)

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