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Stephen H. Bryant
Person information
- affiliation: National Center for Biotechnology Information, Bethesda, USA
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2020 – today
- 2020
- [j76]Jiyao Wang, Philippe Youkharibache, Dachuan Zhang, Christopher J. Lanczycki, Renata C. Geer, Thomas Madej, Lon Phan, Minghong Ward, Shennan Lu, Gabriele H. Marchler, Yanli Wang, Stephen H. Bryant, Lewis Y. Geer
, Aron Marchler-Bauer:
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures. Bioinform. 36(1): 131-135 (2020)
2010 – 2019
- 2019
- [j75]Ming Hao, Stephen H. Bryant, Yanli Wang:
Open-source chemogenomic data-driven algorithms for predicting drug-target interactions. Briefings Bioinform. 20(4): 1465-1474 (2019) - 2018
- [j74]Ming Hao
, Stephen H. Bryant, Yanli Wang:
A new chemoinformatics approach with improved strategies for effective predictions of potential drugs. J. Cheminformatics 10(1): 50:1-50:9 (2018) - 2017
- [j73]Amrita Roy Choudhury, Tiejun Cheng, Lon Phan, Stephen H. Bryant, Yanli Wang:
Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites. Bioinform. 33(11): 1621-1629 (2017) - [j72]Takako Takeda, Ming Hao
, Tiejun Cheng, Stephen H. Bryant, Yanli Wang:
Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge. J. Cheminformatics 9(1): 16:1-16:9 (2017) - [j71]Aron Marchler-Bauer
, Bo Yu, Lianyi Han
, Jane He, Christopher J. Lanczycki, Shennan Lu, Farideh Chitsaz, Myra K. Derbyshire, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Lewis Y. Geer
, Stephen H. Bryant:
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res. 45(Database-Issue): D200-D203 (2017) - [j70]Yanli Wang, Stephen H. Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A. Shoemaker, Paul A. Thiessen, Siqian He, Jian Zhang:
PubChem BioAssay: 2017 update. Nucleic Acids Res. 45(Database-Issue): D955-D963 (2017) - 2016
- [j69]Takako Takeda, Yanli Wang, Stephen H. Bryant:
Structural insights of a PI3K/mTOR dual inhibitor with the morpholino-triazine scaffold. J. Comput. Aided Mol. Des. 30(4): 323-330 (2016) - [j68]Sunghwan Kim
, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton
, Yanli Wang, Stephen H. Bryant:
Literature information in PubChem: associations between PubChem records and scientific articles. J. Cheminformatics 8(1): 32:1-32:15 (2016) - [j67]Ming Hao
, Stephen H. Bryant, Yanli Wang:
Cheminformatics analysis of the AR agonist and antagonist datasets in PubChem. J. Cheminformatics 8(1): 37:1-37:13 (2016) - [j66]Sunghwan Kim
, Evan Bolton, Stephen H. Bryant:
Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets. J. Cheminformatics 8(1): 62:1-62:17 (2016) - [j65]Sunghwan Kim
, Paul A. Thiessen, Evan Bolton
, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han
, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang
, Stephen H. Bryant:
PubChem Substance and Compound databases. Nucleic Acids Res. 44(Database-Issue): 1202-1213 (2016) - 2015
- [j64]Sunghwan Kim
, Lianyi Han
, Bo Yu, Volker Hähnke
, Evan Bolton
, Stephen H. Bryant:
PubChem structure-activity relationship (SAR) clusters. J. Cheminformatics 7: 33:1-33:22 (2015) - [j63]Volker Hähnke, Evan Bolton
, Stephen H. Bryant:
PubChem atom environments. J. Cheminformatics 7: 41:1-41:37 (2015) - [j62]Xiang Yu, Lewis Y. Geer
, Lianyi Han
, Stephen H. Bryant:
Target enhanced 2D similarity search by using explicit biological activity annotations and profiles. J. Cheminformatics 7: 55:1-55:12 (2015) - [j61]Aron Marchler-Bauer
, Myra K. Derbyshire, Noreen R. Gonzales, Shennan Lu, Farideh Chitsaz, Lewis Y. Geer
, Renata C. Geer, Jane He, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Zhouxi Wang, Roxanne A. Yamashita, Dachuan Zhang, Chanjuan Zheng, Stephen H. Bryant:
CDD: NCBI's conserved domain database. Nucleic Acids Res. 43(Database-Issue): 222-226 (2015) - [j60]Sunghwan Kim
, Paul A. Thiessen, Evan Bolton
, Stephen H. Bryant:
PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem. Nucleic Acids Res. 43(Webserver-Issue): W605-W611 (2015) - 2014
- [j59]Yongmei Pan, Tiejun Cheng
, Yanli Wang, Stephen H. Bryant:
Pathway Analysis for Drug Repositioning Based on Public Database Mining. J. Chem. Inf. Model. 54(2): 407-418 (2014) - [j58]Thomas Madej, Christopher J. Lanczycki, Dachuan Zhang, Paul A. Thiessen, Renata C. Geer, Aron Marchler-Bauer
, Stephen H. Bryant:
MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 42(Database-Issue): 297-303 (2014) - [j57]Yanli Wang, Tugba O. Suzek
, Jian Zhang, Jiyao Wang, Siqian He, Tiejun Cheng
, Benjamin A. Shoemaker, Asta Gindulyte, Stephen H. Bryant:
PubChem BioAssay: 2014 update. Nucleic Acids Res. 42(Database-Issue): 1075-1082 (2014) - 2013
- [j56]Sunghwan Kim
, Evan Bolton
, Stephen H. Bryant:
PubChem3D: conformer ensemble accuracy. J. Cheminformatics 5: 1 (2013) - [j55]Volker Hähnke, Evan Bolton
, Stephen H. Bryant:
PubChem: atom environments for molecule standardization. J. Cheminformatics 5(S-1): 38 (2013) - [j54]Yongmei Pan, Yanli Wang, Stephen H. Bryant:
Pharmacophore and 3D-QSAR Characterization of 6-Arylquinazolin-4-amines as Cdc2-like Kinase 4 (Clk4) and Dual Specificity Tyrosine-phosphorylation-regulated Kinase 1A (Dyrk1A) Inhibitors. J. Chem. Inf. Model. 53(4): 938-947 (2013) - [j53]Aron Marchler-Bauer
, Chanjuan Zheng, Farideh Chitsaz, Myra K. Derbyshire, Lewis Y. Geer
, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, Christopher J. Lanczycki, Fu Lu, Shennan Lu, Gabriele H. Marchler, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Stephen H. Bryant:
CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Res. 41(Database-Issue): 348-352 (2013) - 2012
- [j52]Myra K. Derbyshire, Christopher J. Lanczycki, Stephen H. Bryant, Aron Marchler-Bauer
:
Annotation of functional sites with the Conserved Domain Database. Database J. Biol. Databases Curation 2012 (2012) - [j51]Tiejun Cheng
, Yanli Wang, Stephen H. Bryant:
FSelector: a Ruby gem for feature selection. Bioinform. 28(21): 2851-2852 (2012) - [j50]Sunghwan Kim
, Evan Bolton
, Stephen H. Bryant:
Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis. J. Cheminformatics 4: 28 (2012) - [j49]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton
, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer
, Wolfgang Helmberg, Yuri Kapustin, Sergey Krasnov, David Landsman
, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer
, Vadim Miller, Ilene Karsch-Mizrachi
, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt
, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry
, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 40(Database-Issue): 13-25 (2012) - [j48]Yanli Wang, Jewen Xiao, Tugba O. Suzek
, Jian Zhang, Jiyao Wang, Zhigang Zhou, Lianyi Han
, Karen Karapetyan
, Svetlana Dracheva, Benjamin A. Shoemaker, Evan Bolton
, Asta Gindulyte, Stephen H. Bryant:
PubChem's BioAssay Database. Nucleic Acids Res. 40(Database-Issue): 400-412 (2012) - [j47]Thomas Madej, Kenneth J. Addess, Jessica H. Fong, Lewis Y. Geer
, Renata C. Geer, Christopher J. Lanczycki, Chunlei Liu, Shennan Lu, Aron Marchler-Bauer
, Anna R. Panchenko, Jie Chen, Paul A. Thiessen, Yanli Wang, Dachuan Zhang, Stephen H. Bryant:
MMDB: 3D structures and macromolecular interactions. Nucleic Acids Res. 40(Database-Issue): 461-464 (2012) - [j46]Benjamin A. Shoemaker, Dachuan Zhang, Manoj Tyagi, Ratna R. Thangudu, Jessica H. Fong, Aron Marchler-Bauer
, Stephen H. Bryant, Thomas Madej, Anna R. Panchenko:
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. Nucleic Acids Res. 40(Database-Issue): 834-840 (2012) - 2011
- [j45]Viswanadham Sridhara
, Aron Marchler-Bauer
, Stephen H. Bryant, Lewis Y. Geer
:
Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes. Database J. Biol. Databases Curation 2011 (2011) - [j44]Evan Bolton
, Sunghwan Kim
, Stephen H. Bryant:
PubChem3D: Conformer generation. J. Cheminformatics 3: 4 (2011) - [j43]Evan Bolton
, Sunghwan Kim
, Stephen H. Bryant:
PubChem3D: Diversity of shape. J. Cheminformatics 3: 9 (2011) - [j42]Evan Bolton
, Sunghwan Kim
, Stephen H. Bryant:
PubChem3D: Similar conformers. J. Cheminformatics 3: 13 (2011) - [j41]Sunghwan Kim
, Evan Bolton
, Stephen H. Bryant:
PubChem3D: Shape compatibility filtering using molecular shape quadrupoles. J. Cheminformatics 3: 25 (2011) - [j40]Sunghwan Kim
, Evan Bolton
, Stephen H. Bryant:
PubChem3D: Biologically relevant 3-D similarity. J. Cheminformatics 3: 26 (2011) - [j39]Evan Bolton
, Jie Chen, Sunghwan Kim
, Lianyi Han
, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang
, Stephen H. Bryant:
PubChem3D: a new resource for scientists. J. Cheminformatics 3: 32 (2011) - [j38]Jun D. Zhang, Lewis Y. Geer
, Evan Bolton
, Stephen H. Bryant:
Automated annotation of chemical names in the literature with tunable accuracy. J. Cheminformatics 3: 52 (2011) - [j37]Tiejun Cheng
, Qingliang Li
, Yanli Wang, Stephen H. Bryant:
Binary Classification of Aqueous Solubility Using Support Vector Machines with Reduction and Recombination Feature Selection. J. Chem. Inf. Model. 51(2): 229-236 (2011) - [j36]Tiejun Cheng
, Qingliang Li, Yanli Wang, Stephen H. Bryant:
Identifying Compound-Target Associations by Combining Bioactivity Profile Similarity Search and Public Databases Mining. J. Chem. Inf. Model. 51(9): 2440-2448 (2011) - [j35]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Ian M. Fingerman, Lewis Y. Geer
, Wolfgang Helmberg, Yuri Kapustin, David Landsman
, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer
, Vadim Miller, Ilene Mizrachi
, James Ostell, Anna R. Panchenko, Lon Phan, Kim D. Pruitt
, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry
, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 39(Database-Issue): 38-51 (2011) - [j34]Aron Marchler-Bauer
, Shennan Lu, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer
, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Marina V. Omelchenko, Cynthia L. Robertson, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Chanjuan Zheng, Stephen H. Bryant:
CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39(Database-Issue): 225-229 (2011) - 2010
- [j33]Tiejun Cheng
, Yanli Wang, Stephen H. Bryant:
Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules. Bioinform. 26(22): 2881-2888 (2010) - [j32]Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka
, Paul A. Thiessen, Stephen H. Bryant:
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 11: 3 (2010) - [j31]Ratna R. Thangudu, Manoj Tyagi, Benjamin A. Shoemaker, Stephen H. Bryant, Anna R. Panchenko, Thomas Madej:
Knowledge-based annotation of small molecule binding sites in proteins. BMC Bioinform. 11: 365 (2010) - [j30]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Evan Bolton
, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David Landsman
, David J. Lipman, Zhiyong Lu, Thomas L. Madden, Tom Madej, Donna R. Maglott, Aron Marchler-Bauer
, Vadim Miller, Ilene Mizrachi
, James Ostell, Anna R. Panchenko, Kim D. Pruitt
, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry
, Martin Shumway, Karl Sirotkin, Douglas J. Slotta, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Yanli Wang, W. John Wilbur, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 38(Database-Issue): 5-16 (2010) - [j29]Yanli Wang, Evan Bolton
, Svetlana Dracheva, Karen Karapetyan
, Benjamin A. Shoemaker, Tugba O. Suzek
, Jiyao Wang, Jewen Xiao, Jian Zhang
, Stephen H. Bryant:
An overview of the PubChem BioAssay resource. Nucleic Acids Res. 38(Database-Issue): 255-266 (2010) - [j28]Lewis Y. Geer
, Aron Marchler-Bauer
, Renata C. Geer, Lianyi Han
, Jane He, Siqian He, Chunlei Liu, Wenyao Shi, Stephen H. Bryant:
The NCBI BioSystems database. Nucleic Acids Res. 38(Database-Issue): 492-496 (2010) - [j27]Benjamin A. Shoemaker, Dachuan Zhang, Ratna R. Thangudu, Manoj Tyagi, Jessica H. Fong, Aron Marchler-Bauer
, Stephen H. Bryant, Tom Madej, Anna R. Panchenko:
Inferred Biomolecular Interaction Server - a web server to analyze and predict protein interacting partners and binding sites. Nucleic Acids Res. 38(Database-Issue): 518-524 (2010)
2000 – 2009
- 2009
- [j26]Lianyi Han
, Yanli Wang, Stephen H. Bryant:
A survey of across-target bioactivity results of small molecules in PubChem. Bioinform. 25(17): 2251-2255 (2009) - [j25]Qingliang Li
, Yanli Wang, Stephen H. Bryant:
A novel method for mining highly imbalanced high-throughput screening data in PubChem. Bioinform. 25(24): 3310-3316 (2009) - [j24]Zhigang Zhou, Yanli Wang, Stephen H. Bryant:
Computational analysis of the cathepsin B inhibitors activities through LR-MMPBSA binding affinity calculation based on docked complex. J. Comput. Chem. 30(14): 2165-2175 (2009) - [j23]Wolf-Dietrich Ihlenfeldt, Evan Bolton
, Stephen H. Bryant:
The PubChem chemical structure sketcher. J. Cheminformatics 1: 20 (2009) - [j22]Eric W. Sayers, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar
, Scott Federhen, Michael Feolo, Lewis Y. Geer
, Wolfgang Helmberg, Yuri Kapustin, David Landsman
, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, Ilene Karsch-Mizrachi
, James Ostell, Kim D. Pruitt
, Gregory D. Schuler, Edwin Sequeira, Stephen T. Sherry
, Martin Shumway, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko, Jian Ye:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 37(Database-Issue): 5-15 (2009) - [j21]Aron Marchler-Bauer
, John B. Anderson, Farideh Chitsaz, Myra K. Derbyshire, Carol DeWeese-Scott, Jessica H. Fong, Lewis Y. Geer
, Renata C. Geer, Noreen R. Gonzales, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Asba Tasneem, Narmada Thanki, Roxanne A. Yamashita, Dachuan Zhang, Naigong Zhang, Stephen H. Bryant:
CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res. 37(Database-Issue): 205-210 (2009) - [j20]Yanli Wang, Jewen Xiao, Tugba O. Suzek
, Jian Zhang, Jiyao Wang, Stephen H. Bryant:
PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 37(Web-Server-Issue): 623-633 (2009) - [c2]Yanli Wang, Stephen H. Bryant:
PubChem: The NIH Public Repository for Small Molecules and Biological Screening Results. BIOCOMP 2009: 726-728 - 2008
- [j19]Lianyi Han
, Yanli Wang, Stephen H. Bryant:
Developing and validating predictive decision tree models from mining chemical structural fingerprints and high-throughput screening data in PubChem. BMC Bioinform. 9 (2008) - [j18]David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar
, Scott Federhen, Michael Feolo, Lewis Y. Geer
, Wolfgang Helmberg, Yuri Kapustin, Oleg Khovayko
, David Landsman
, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, James Ostell, Kim D. Pruitt
, Gregory D. Schuler, Martin Shumway, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 36(Database-Issue): 13-21 (2008) - 2007
- [j17]Yulia V. Borodina
, Evan Bolton
, Fabien Fontaine, Stephen H. Bryant:
Assessment of Conformational Ensemble Sizes Necessary for Specific Resolutions of Coverage of Conformational Space. J. Chem. Inf. Model. 47(4): 1428-1437 (2007) - [j16]David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar
, Scott Federhen, Lewis Y. Geer
, Yuri Kapustin, Oleg Khovayko
, David Landsman
, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt
, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 35(Database-Issue): 5-12 (2007) - [j15]Aron Marchler-Bauer
, John B. Anderson, Myra K. Derbyshire, Carol DeWeese-Scott, Noreen R. Gonzales, Marc Gwadz, Luning Hao, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Dmitri M. Krylov, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Shennan Lu, Gabriele H. Marchler, Mikhail Mullokandov, James S. Song, Narmada Thanki, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant:
CDD: a conserved domain database for interactive domain family analysis. Nucleic Acids Res. 35(Database-Issue): 237-240 (2007) - [j14]Yanli Wang, Kenneth J. Addess, Jie Chen, Lewis Y. Geer
, Jane He, Siqian He, Shennan Lu, Thomas Madej, Aron Marchler-Bauer
, Paul A. Thiessen, Naigong Zhang, Stephen H. Bryant:
MMDB: annotating protein sequences with Entrez's 3D-structure database. Nucleic Acids Res. 35(Database-Issue): 298-300 (2007) - 2006
- [j13]Saikat Chakrabarti, Christopher J. Lanczycki, Anna R. Panchenko, Teresa M. Przytycka
, Paul A. Thiessen, Stephen H. Bryant:
State of the art: refinement of multiple sequence alignments. BMC Bioinform. 7: 499 (2006) - [j12]David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David L. Kenton, Oleg Khovayko
, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Kim D. Pruitt
, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Stephen T. Sherry
, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tugba O. Suzek
, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 34(Database-Issue): 173-180 (2006) - 2005
- [j11]Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant:
A structure-based method for protein sequence alignment. Bioinform. 21(8): 1451-1456 (2005) - [j10]David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Deanna M. Church, Michael DiCuccio, Ron Edgar
, Scott Federhen, Wolfgang Helmberg, David L. Kenton, Oleg Khovayko
, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Joan U. Pontius, Kim D. Pruitt
, Gregory D. Schuler, Lynn M. Schriml
, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Grigory Starchenko, Tugba O. Suzek
, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 33(Database-Issue): 39-45 (2005) - [j9]Aron Marchler-Bauer
, John B. Anderson, Praveen F. Cherukuri, Carol DeWeese-Scott, Lewis Y. Geer
, Marc Gwadz, Siqian He, David I. Hurwitz, John D. Jackson, Zhaoxi Ke, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Fu Lu, Gabriele H. Marchler, Mikhail Mullokandov, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Jodie J. Yin, Dachuan Zhang, Stephen H. Bryant:
CDD: a Conserved Domain Database for protein classification. Nucleic Acids Res. 33(Database-Issue): 192-196 (2005) - 2004
- [j8]Aron Marchler-Bauer
, Stephen H. Bryant:
CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32(Web-Server-Issue): 327-331 (2004) - 2003
- [j7]Aron Marchler-Bauer
, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer
, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder
, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant:
CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31(1): 383-387 (2003) - [j6]Jie Chen, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer
, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Aron Marchler-Bauer
, Gabriele H. Marchler, Raja Mazumder
, Anastasia N. Nikolskaya, Bachoti S. Rao, Anna R. Panchenko, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant:
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 31(1): 474-477 (2003) - 2002
- [j5]Yanli Wang, John B. Anderson, Jie Chen, Lewis Y. Geer, Siqian He, David I. Hurwitz, Cynthia A. Liebert, Thomas Madej, Gabriele H. Marchler, Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, James S. Song, Paul A. Thiessen, Roxanne A. Yamashita, Stephen H. Bryant:
MMDB: Entrez's 3D-structure database. Nucleic Acids Res. 30(1): 249-252 (2002) - [j4]Aron Marchler-Bauer, Anna R. Panchenko, Benjamin A. Shoemaker, Paul A. Thiessen, Lewis Y. Geer
, Stephen H. Bryant:
CDD: a database of conserved domain alignments with links to domain three-dimensional structure. Nucleic Acids Res. 30(1): 281-283 (2002) - 2000
- [j3]Sarah J. Wheelan, Aron Marchler-Bauer, Stephen H. Bryant:
Domain size distributions can predict domain boundaries. Bioinform. 16(7): 613-618 (2000) - [j2]Yanli Wang, Kenneth J. Addess, Lewis Y. Geer, Thomas Madej, Aron Marchler-Bauer, Diane Zimmerman, Stephen H. Bryant:
MMDB: 3D structure data in Entrez. Nucleic Acids Res. 28(1): 243-245 (2000)
1990 – 1999
- 1999
- [j1]Aron Marchler-Bauer
, Kenneth J. Addess, Colombe Chappey, Lewis Y. Geer
, Thomas Madej, Yo Matsuo, Yanli Wang, Stephen H. Bryant:
MMDB: Entrez's 3D structure database. Nucleic Acids Res. 27(1): 240-243 (1999) - 1995
- [c1]Hitomi Ohkawa, James Ostell, Stephen H. Bryant:
MMDB: An ASN.1 Specification for Macromolecular Structure. ISMB 1995: 259-267
Coauthor Index
![](https://dblp.dagstuhl.de/img/cog.dark.24x24.png)
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