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Norio Kobayashi
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2020 – today
- 2024
- [i3]Julio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Ana Claudia Sima, Norio Kobayashi:
SPARQL Generation: an analysis on fine-tuning OpenLLaMA for Question Answering over a Life Science Knowledge Graph. CoRR abs/2402.04627 (2024) - 2023
- [c30]Julio Cesar Rangel Reyes, Norio Kobayashi:
Developing a semantic event search engine for biomedical events. SWAT4HCLS 2023: 128-129 - 2021
- [j10]Imad Abugessaisa
, Jordan A. Ramilowski
, Marina Lizio, Jesicca Severin
, Akira Hasegawa, Jayson Harshbarger, Atsushi Kondo, Shuhei Noguchi, Chi Wai Yip, Jasmine Li Ching Ooi, Michihira Tagami, Fumi Hori, Saumya Agrawal
, Chung-Chau Hon
, Mélissa Cardon, Shuya Ikeda, Hiromasa Ono, Hidemasa Bono
, Masaki Kato, Kosuke Hashimoto, Alessandro Bonetti, Norio Kobayashi, Jay W. Shin, Michiel J. L. de Hoon
, Yoshihide Hayashizaki, Piero Carninci
, Hideya Kawaji, Takeya Kasukawa
:
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. Nucleic Acids Res. 49(Database-Issue): D892-D898 (2021) - [i2]Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi:
Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data. CoRR abs/2110.10407 (2021) - [i1]Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi:
Development of Semantic Web-based Imaging Database for Biological Morphome. CoRR abs/2110.12058 (2021)
2010 – 2019
- 2019
- [j9]Masahiko Morita, Kazuro Shimokawa, Masaomi Nishimura, Sakiko Nakamura, Yuki Tsujimura, Satoko Takemoto
, Takehiro Tawara, Hideo Yokota, Shuhei Wemler, Daisuke Miyamoto, Hidetoshi Ikeno
, Akira Sato, Teiichi Furuichi
, Norio Kobayashi, Yoshihiro Okumura
, Yoko Shiraishi-Yamaguchi, Yuko Okamura-Oho
:
ViBrism DB: an interactive search and viewer platform for 2D/3D anatomical images of gene expression and co-expression networks. Nucleic Acids Res. 47(Database-Issue): D859-D866 (2019) - [c29]Josh Moore, Norio Kobayashi, Susanne Kunis, Shuichi Onami, Jason R. Swedlow:
On Bringing Bioimaging Data into the Open (World). SWAT4HCLS 2019: 44-53 - [c28]Norio Kobayashi, Josh Moore, Shuichi Onami, Jason R. Swedlow:
OME Core Ontology: An OWL-based Life Science Imaging Data Model. SWAT4HCLS 2019: 149-150 - [c27]Norio Kobayashi, Yasunori Yamamoto, Atsuko Yamaguchi:
UmakaData Extension: Toward Realization of a Practical SPARQL Endpoint Discovery Service for Life Sciences. SWAT4HCLS 2019: 151-152 - 2018
- [j8]Norio Kobayashi, Satoshi Kume, Kai Lenz, Hiroshi Masuya:
RIKEN MetaDatabase: A Database Platform for Health Care and Life Sciences as a Microcosm of Linked Open Data Cloud. Int. J. Semantic Web Inf. Syst. 14(1): 140-164 (2018) - 2017
- [c26]Atsuko Yamaguchi
, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
Semantic Graph Analysis for Federated LOD Surfing in Life Sciences. JIST 2017: 268-276 - [c25]Satoshi Kume, Hiroshi Masuya, Mitsuyo Maeda, Mitsuo Suga, Yosky Kataoka, Norio Kobayashi:
Development of Semantic Web-Based Imaging Database for Biological Morphome. JIST 2017: 277-285 - [c24]Norio Kobayashi, Satoshi Kume, Hiroshi Masuya:
Metadata-driven Interdisciplinary Research Projects Using RIKEN MetaDatabase. SWAT4LS 2017 - [c23]Atsuko Yamaguchi, Kouji Kozaki, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
LOD Surfer API: Web API for LOD Surfing Using Class-Class Relationships in Life Sciences. SWAT4LS 2017 - 2016
- [c22]Norio Kobayashi, Kai Lenz, Hiroshi Masuya:
RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences. JIST (Workshops & Posters) 2016: 46-49 - [c21]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
SPARQL Builder: Constructing SPARQL Query by Traversing Class-Class Relationships for Life Science Databases. JIST (Workshops & Posters) 2016: 58-61 - [c20]Norio Kobayashi, Kai Lenz, Hiroshi Masuya:
RIKEN MetaDatabase: A Database Platform as a Microcosm of Linked Open Data Cloud in the Life Sciences. JIST 2016: 99-115 - [c19]Atsuko Yamaguchi
, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
Semantic Data Acquisition by Traversing Class-Class Relationships Over Linked Open Data. JIST 2016: 136-151 - [c18]Satoshi Kume, Hiroshi Masuya, Yosky Kataoka, Norio Kobayashi:
Development of an Ontology for an Integrated Image Analysis Platform to enable Global Sharing of Microscopy Imaging Data. ISWC (Posters & Demos) 2016 - [c17]Kai Lenz, Hiroshi Masuya, Norio Kobayashi:
RIKEN MetaDatabase: a Database Publication Platform for RIKENs Life-science Researchers that Promotes Research Collaborations over Different Research Area. ISWC (Posters & Demos) 2016 - [c16]Terue Takatsuki, Mikako Saito, Sadahiro Kumagai, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Norio Kobayashi, Hiroshi Masuya:
A RDF based Portal of Biological Phenotype Data produced in Japan. ISWC (Posters & Demos) 2016 - [c15]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Yasunori Yamamoto, Hiroshi Masuya, Norio Kobayashi:
Data Acquisition by Traversing Class-Class Relationships over the Linked Open Data. ISWC (Posters & Demos) 2016 - [c14]Atsuko Yamaguchi, Yasunori Yamamoto, Kouji Kozaki, Kai Lenz, Hiroshi Masuya, Norio Kobayashi:
SPARQL Query Construction with Monitoring Service for Endpoints. SWAT4LS 2016 - 2015
- [c13]Atsuko Yamaguchi
, Kouji Kozaki, Kai Lenz, Hongyan Wu, Yasunori Yamamoto, Norio Kobayashi:
Efficiently Finding Paths Between Classes to Build a SPARQL Query for Life-Science Databases. JIST 2015: 321-330 - [c12]Atsuko Yamaguchi, Katsuhiko Okubo, Norio Kobayashi, Kouji Kozaki, Sadahiro Kumagai, Kai Lenz, Tomoe Nobusada, Hongyan Wu, Yasunori Yamamoto, Hideki Hatanaka:
RDF-Based Integration with SPARQL Building System for Life Science Database Archive. SWAT4LS 2015: 195-196 - [c11]Hiroshi Masuya, Terue Takatsuki, Mikako Saito, Eiki Takayama, Kazuya Ohshima, Nozomu Ohshiro, Kai Lenz, Nobuhiko Tanaka, Hiroshi Mori, Shuichi Kawashima, Norio Kobayashi:
RDF-based Data Sharing of Bio-resource Related Information. SWAT4LS 2015: 210-211 - [c10]Norio Kobayashi, Kai Lenz, Hiroshi Masuya:
RIKEN Meta Database: A Life-science Metadata Database Based on the Semantic Web. SWAT4LS 2015: 222-223 - 2014
- [c9]Atsuko Yamaguchi, Kouji Kozaki, Kai Lenz, Hongyan Wu, Norio Kobayashi:
An Intelligent SPARQL Query Builder for Exploration of Various Life-science Databases. IESD@ISWC 2014 - [c8]Norio Kobayashi, Kai Lenz, Hongyan Wu, Kouji Kozaki, Atsuko Yamaguchi:
Prototype Implementation of SPARQL Builder for Life-science Databases by Intelligent Schema Analysis on RDF datasets. SWAT4LS 2014 - 2013
- [j7]Yuko Makita
, Norio Kobayashi, Yuko Yoshida, Koji Doi, Yoshiki Mochizuki, Koro Nishikata, Akihiro Matsushima, Satoshi Takahashi, Manabu Ishii, Terue Takatsuki, Rinki Bhatia, Zolzaya Khadbaatar, Hajime Watabe, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: ranking genes and bioresources based on Semantic Web Association Study. Nucleic Acids Res. 41(Webserver-Issue): 109-114 (2013) - [c7]Norio Kobayashi, Yuko Makita, Manabu Ishii, Akihiro Matsushima, Yoshiki Mochizuki, Koji Doi, Koro Nishikata, David Gifford, Terue Takatsuki, Hiroshi Masuya, Tetsuro Toyoda:
PosMed: A Biomedical Entity Prioritisation Tool Based on Statistical Inference over Literature and the Semantic Web. SWAT4LS 2013 - 2012
- [c6]Hiroshi Masuya, Terue Takatsuki, Yuko Makita, Yuko Yoshida, Yoshiki Mochizuki, Norio Kobayashi, Atsushi Yoshiki, Yukio Nakamura, Tetsuro Toyoda, Yuichi Obata:
Development of Linked Open Data for Bioresources. JIST 2012: 350-355 - 2011
- [j6]Hiroshi Masuya, Yuko Makita
, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki
, Nobuhiko Tanaka
, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata
, Kouji Kozaki, Teiichi Furuichi
, Hideya Kawaji
, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki
, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara
, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda:
The RIKEN integrated database of mammals. Nucleic Acids Res. 39(Database-Issue): 861-870 (2011) - [j5]Norio Kobayashi, Manabu Ishii, Satoshi Takahashi, Yoshiki Mochizuki, Akihiro Matsushima, Tetsuro Toyoda:
Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases. Nucleic Acids Res. 39(Web-Server-Issue): 533-540 (2011) - [c5]Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi:
An Advanced Strategy for Integration of Biological Measurement Data. ICBO 2011 - [c4]Norio Kobayashi, Tetsuro Toyoda:
BioSPARQL: ontology-based smart building of SPARQL queries for biological linked open data. SWAT4LS 2011: 47-49
2000 – 2009
- 2009
- [j4]Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita
, Tetsuro Toyoda:
OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Res. 37(Web-Server-Issue): 57-62 (2009) - [j3]Yuko Yoshida, Yuko Makita
, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda:
PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Res. 37(Web-Server-Issue): 147-152 (2009) - 2008
- [j2]Norio Kobayashi, Tetsuro Toyoda:
Statistical search on the Semantic Web. Bioinform. 24(7): 1002-1010 (2008) - [c3]Norio Kobayashi, Yuko Makita, Eli Kaminuma, Shuji Kawaguchi, Yuko Yoshida, Yoshiki Mochizuki, Akihiro Matsushima, Manabu Ishii, Ryo Umetsu, Satomi Asano, Naohiko Heida, Tetsuya Sakurai, Takashi Kuromori, Kazuo Shinozaki, Tetsuro Toyoda:
A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web. SWAT4LS 2008 - [c2]Norio Kobayashi, Tetsuro Toyoda:
Penta and Hexa Statements are Suitable for Representing Omics Knowledge on the Semantic Web. SWAT4LS 2008 - 2007
- [j1]Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Norio Kobayashi, Yoshiyuki Sakaki:
OmicBrowse: a browser of multidimensional omics annotations. Bioinform. 23(4): 524-526 (2007) - 2001
- [c1]Norio Kobayashi, Mircea Marin, Tetsuo Ida:
Collaborative Constraint Functional Logic Programming in an Open Environment. APLAS 2001: 49-59
Coauthor Index
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