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Simone Spolaor
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2020 – today
- 2023
- [j14]Daniele M. Papetti, Simone Spolaor, Iman Nazari, Andrea Tirelli, Tommaso Leonardi, Chiara Caprioli, Daniela Besozzi, Thalia Vlachou, Pier Giuseppe Pelicci, Paolo Cazzaniga, Marco S. Nobile:
Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning. Frontiers Bioinform. 3 (2023) - [j13]Davide Chicco
, Simone Spolaor
, Marco S. Nobile
:
Ten quick tips for fuzzy logic modeling of biomedical systems. PLoS Comput. Biol. 19(12) (2023) - 2022
- [j12]Simone G. Riva
, Paolo Cazzaniga
, Marco S. Nobile
, Simone Spolaor
, Leonardo Rundo
, Daniela Besozzi
, Andrea Tangherloni
:
SMGen: A Generator of Synthetic Models of Biochemical Reaction Networks. Symmetry 14(1): 119 (2022) - [c18]Caro Fuchs, Simone Spolaor
, Uzay Kaymak
, Marco S. Nobile:
The Impact of Variable Selection and Transformation on the Interpretability and Accuracy of Fuzzy Models. CIBCB 2022: 1-8 - [c17]Daniele M. Papetti
, Vasco Coelho
, Daniel A. Ashlock, Paolo Cazzaniga, Simone Spolaor
, Daniela Besozzi, Marco S. Nobile:
Local Bubble Dilation Functions: Hypersphere-bounded Landscape Deformations Simplify Global Optimization. CIBCB 2022: 1-8 - 2021
- [j11]Andrea Tangherloni
, Marco S. Nobile
, Paolo Cazzaniga, Giulia Capitoli, Simone Spolaor
, Leonardo Rundo
, Giancarlo Mauri
, Daniela Besozzi:
FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks. PLoS Comput. Biol. 17(9) (2021) - [c16]Andrea Tangherloni
, Simone G. Riva, Simone Spolaor
, Daniela Besozzi, Marco S. Nobile, Paolo Cazzaniga:
The Impact of Representation on the Optimization of Marker Panels for Single-cell RNA Data. CEC 2021: 1423-1430 - [c15]Simone Spolaor
, Daniele M. Papetti
, Paolo Cazzaniga, Daniela Besozzi, Marco S. Nobile:
A comparison of multi-objective optimization algorithms to identify drug target combinations. CIBCB 2021: 1-8 - 2020
- [b1]Simone Spolaor:
Fuzzy logic for the modeling and simulation of complex systems. University of Milan, Italy, 2020 - [j10]Marco S. Nobile
, Giuseppina Votta, Roberta Palorini, Simone Spolaor
, Humberto De Vitto, Paolo Cazzaniga, Francesca Ricciardiello, Giancarlo Mauri
, Lilia Alberghina, Ferdinando Chiaradonna
, Daniela Besozzi
:
Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells. Bioinform. 36(7): 2181-2188 (2020) - [j9]Luca Manzoni
, Daniele M. Papetti
, Paolo Cazzaniga
, Simone Spolaor
, Giancarlo Mauri
, Daniela Besozzi
, Marco S. Nobile
:
Surfing on Fitness Landscapes: A Boost on Optimization by Fourier Surrogate Modeling. Entropy 22(3): 285 (2020) - [j8]Daniela Besozzi, Luca Manzoni
, Marco S. Nobile, Simone Spolaor
, Mauro Castelli
, Leonardo Vanneschi
, Paolo Cazzaniga, Stefano Ruberto
, Leonardo Rundo
, Andrea Tangherloni
:
Computational Intelligence for Life Sciences. Fundam. Informaticae 171(1-4): 57-80 (2020) - [j7]Simone Spolaor
, Caro Fuchs, Paolo Cazzaniga, Uzay Kaymak
, Daniela Besozzi, Marco S. Nobile:
Simpful: A User-Friendly Python Library for Fuzzy Logic. Int. J. Comput. Intell. Syst. 13(1): 1687-1698 (2020) - [j6]Simone Spolaor
, Marco S. Nobile
, Giancarlo Mauri
, Paolo Cazzaniga
, Daniela Besozzi
:
Coupling Mechanistic Approaches and Fuzzy Logic to Model and Simulate Complex Systems. IEEE Trans. Fuzzy Syst. 28(8): 1748-1759 (2020) - [j5]Marco S. Nobile
, Eric Nisoli, Thalia Vlachou, Simone Spolaor
, Paolo Cazzaniga
, Giancarlo Mauri
, Pier Giuseppe Pelicci
, Daniela Besozzi
:
cuProCell: GPU-Accelerated Analysis of Cell Proliferation With Flow Cytometry Data. IEEE J. Biomed. Health Informatics 24(11): 3173-3181 (2020) - [c14]Marco S. Nobile, Simone Spolaor
, Paolo Cazzaniga, Daniele M. Papetti
, Daniela Besozzi, Daniel A. Ashlock, Luca Manzoni:
Which random is the best random? A study on sampling methods in Fourier surrogate modeling. CEC 2020: 1-8 - [c13]Marco S. Nobile, Paolo Cazzaniga, Simone Spolaor
, Daniela Besozzi, Luca Manzoni:
Fourier Surrogate Models of Dilated Fitness Landscapes in Systems Biology : or how we learned to torture optimization problems until they confess. CIBCB 2020: 1-8 - [c12]Caro Fuchs, Simone Spolaor
, Marco S. Nobile, Uzay Kaymak
:
pyFUME: a Python Package for Fuzzy Model Estimation. FUZZ-IEEE 2020: 1-8 - [c11]Daniele M. Papetti
, Simone Spolaor
, Daniela Besozzi, Paolo Cazzaniga, Marco Antoniotti, Marco S. Nobile:
On the automatic calibration of fully analogical spiking neuromorphic chips. IJCNN 2020: 1-8 - [c10]Caro Fuchs
, Simone Spolaor
, Marco S. Nobile
, Uzay Kaymak
:
A Graph Theory Approach to Fuzzy Rule Base Simplification. IPMU (1) 2020: 387-401
2010 – 2019
- 2019
- [j4]Andrea Tangherloni
, Simone Spolaor
, Paolo Cazzaniga
, Daniela Besozzi, Leonardo Rundo
, Giancarlo Mauri
, Marco S. Nobile
:
Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design. Appl. Soft Comput. 81 (2019) - [j3]Marco S. Nobile, Thalia Vlachou, Simone Spolaor
, Daniela Bossi, Paolo Cazzaniga, Luisa Lanfrancone
, Giancarlo Mauri
, Pier Giuseppe Pelicci
, Daniela Besozzi:
Modeling cell proliferation in human acute myeloid leukemia xenografts. Bioinform. 35(18): 3378-3386 (2019) - [j2]Andrea Tangherloni
, Simone Spolaor
, Leonardo Rundo
, Marco S. Nobile, Paolo Cazzaniga, Giancarlo Mauri
, Pietro Liò
, Ivan Merelli, Daniela Besozzi:
GenHap: a novel computational method based on genetic algorithms for haplotype assembly. BMC Bioinform. 20-S(4): 172:1-172:14 (2019) - [c9]Marco S. Nobile, Thalia Vlachou, Simone Spolaor
, Paolo Cazzaniga, Giancarlo Mauri
, Pier Giuseppe Pelicci
, Daniela Besozzi:
ProCell: Investigating cell proliferation with Swarm Intelligence. CIBCB 2019: 1-8 - [c8]Caro Fuchs, Simone Spolaor
, Marco S. Nobile, Uzay Kaymak
:
A Swarm Intelligence Approach to Avoid Local Optima in Fuzzy C-Means Clustering. FUZZ-IEEE 2019: 1-6 - [c7]Simone Spolaor:
Bridging Qualitative and Quantitative Modeling with FuzzX. ICTCS 2019: 14-19 - [c6]Simone Spolaor
, Caro Fuchs, Uzay Kaymak
, Marco S. Nobile:
A Novel Multi-objective Approach to Fuzzy Clustering. SSCI 2019: 850-857 - [p1]Simone Spolaor
, Marco Gribaudo
, Mauro Iacono
, Tomas Kadavy
, Zuzana Komínková Oplatková
, Giancarlo Mauri
, Sabri Pllana
, Roman Senkerik
, Natalija Stojanovic
, Esko Turunen
, Adam Viktorin
, Salvatore Vitabile
, Ales Zamuda
, Marco S. Nobile
:
Towards Human Cell Simulation. High-Performance Modelling and Simulation for Big Data Applications 2019: 221-249 - 2018
- [c5]Marco S. Nobile, Andrea Tangherloni
, Leonardo Rundo
, Simone Spolaor
, Daniela Besozzi, Giancarlo Mauri
, Paolo Cazzaniga:
Computational Intelligence for Parameter Estimation of Biochemical Systems. CEC 2018: 1-8 - [c4]Andrea Tangherloni
, Leonardo Rundo
, Simone Spolaor
, Marco S. Nobile, Ivan Merelli, Daniela Besozzi, Giancarlo Mauri
, Paolo Cazzaniga, Pietro Liò
:
High Performance Computing for Haplotyping: Models and Platforms. Euro-Par Workshops 2018: 650-661 - [c3]Andrea Tangherloni
, Leonardo Rundo
, Simone Spolaor
, Paolo Cazzaniga, Marco S. Nobile:
GPU-Powered Multi-Swarm Parameter Estimation of Biological Systems: A Master-Slave Approach. PDP 2018: 698-705 - 2017
- [j1]Marco S. Nobile, Antonio E. Porreca
, Simone Spolaor
, Luca Manzoni
, Paolo Cazzaniga, Giancarlo Mauri
, Daniela Besozzi:
Efficient Simulation of Reaction Systems on Graphics Processing Units. Fundam. Informaticae 154(1-4): 307-321 (2017) - [c2]Simone Spolaor
, Andrea Tangherloni
, Leonardo Rundo
, Paolo Cazzaniga
, Marco S. Nobile
:
Estimation of Kinetic Reaction Constants: Exploiting Reboot Strategies to Improve PSO's Performance. CIBB 2017: 92-102 - [c1]Simone Spolaor
, Andrea Tangherloni
, Leonardo Rundo
, Marco S. Nobile, Paolo Cazzaniga:
Reboot strategies in particle swarm optimization and their impact on parameter estimation of biochemical systems. CIBCB 2017: 1-8 - [i1]Andrea Tangherloni, Simone Spolaor, Leonardo Rundo, Marco S. Nobile, Ivan Merelli, Paolo Cazzaniga, Daniela Besozzi, Giancarlo Mauri, Pietro Liò:
GenHap: A novel computational method based on genetic algorithms for haplotype assembly. PeerJ Prepr. 5: e3246 (2017)
Coauthor Index
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