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ORCIDSophia I. Thomopoulos
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2020 – today
- 2024
[c28]Yixue Feng, Bramsh Qamar Chandio, Julio E. Villalon-Reina, Sebastian M. Benavidez, Tamoghna Chattopadhyay, Sasha Chehrzadeh, Emily Laltoo, Sophia I. Thomopoulos, Himanshu Joshi, Ganesan Venkatasubramanian, John P. John, Neda Jahanshad, Paul M. Thompson:
Deep Normative Tractometry for Identifying Joint White Matter Macro- and Micro-structural Abnormalities in Alzheimer's Disease. EMBC 2024: 1-7- [c27]Bramsh Qamar Chandio, Julio E. Villalon-Reina, Talia M. Nir, Sophia I. Thomopoulos, Yixue Feng, Sebastian M. Benavidez, Neda Jahanshad, Jaroslaw Harezlak, Eleftherios Garyfallidis, Paul M. Thompson:
Bundle Analytics based Data Harmonization for Multi-Site Diffusion MRI Tractometry. EMBC 2024: 1-7 - [c26]Tamoghna Chattopadhyay, Neha Ann Joshy, Saket Ozarkar, Ketaki Buwa, Yixue Feng, Emily Laltoo, Sophia I. Thomopoulos, Julio Villalon, Himanshu Joshi, Ganesan Venkatasubramanian, John P. John, Paul M. Thompson:
Brain Age Analysis and Dementia Classification using Convolutional Neural Networks trained on Diffusion MRI: Tests in Indian and North American Cohorts. EMBC 2024: 1-7 - [c25]Nikhil J. Dhinagar, Sophia I. Thomopoulos, Emily Laltoo, Paul M. Thompson:
Counterfactual MRI Generation with Denoising Diffusion Models for Interpretable Alzheimer's Disease Effect Detection. EMBC 2024: 1-6 - [c24]Shruti Prashant Gadewar, Alyssa H. Zhu, Iyad Ba Gari, Sunanda Somu, Sophia I. Thomopoulos, Paul M. Thompson, Talia M. Nir, Neda Jahanshad:
Synthesizing Study-Specific Controls Using Generative Models on Open Access Datasets for Harmonized Multi-Study Analyses. ISBI 2024: 1-5 - [c23]Tamoghna Chattopadhyay, Neha Ann Joshy, Chirag Jagad, Emma J. Gleave, Sophia I. Thomopoulos, Yixue Feng, Julio E. Villalon-Reina, Emily Laltoo, Himanshu Joshi, Ganesan Venkatasubramanian, John P. John, Greg Ver Steeg, José Luis Ambite, Paul M. Thompson:
Comparison of Explainable AI Models for MRI-Based Alzheimer's Disease Classification. SIPAIM 2024: 1-4 - 2023
- [j4]Xi Zhu
, Yoojean Kim, Orren Ravid, Xiaofu He, Benjamin Suarez-Jimenez, Sigal Zilcha-Mano, Amit Lazarov, Seonjoo Lee, Chadi G. Abdallah, Michael Angstadt, Christopher L. Averill, C. Lexi Baird, Lee Baugh, Jennifer Urbano Blackford, Jessica Bomyea, Steven E. Bruce, Richard A. Bryant, Zhihong Cao, Kyle Choi, Josh M. Cisler, Andrew S. Cotton, Judith K. Daniels, Nicholas D. Davenport, Richard J. Davidson, Michael D. De Bellis, Emily L. Dennis, Maria Densmore, Terri A. deRoon-Cassini, Seth G. Disner, Wissam El-Hage, Amit Etkin, Negar Fani, Kelene A. Fercho, Jacklynn M. Fitzgerald, Gina L. Forster, Jessie L. Frijling, Elbert Geuze, Atilla Gonenc, Evan M. Gordon, Staci Gruber, Daniel W. Grupe, Jeffrey P. Guenette, Courtney C. Haswell, Ryan J. Herringa, Julia Herzog, David Bernd Hofmann, Bobak Hosseini, Anna R. Hudson, Ashley A. Huggins, Jonathan C. Ipser, Neda Jahanshad, Meilin Jia-Richards, Tanja Jovanovic, Milissa L. Kaufman, Mitzy Kennis, Anthony King, Philipp Kinzel, Saskia B. J. Koch, Inga Koerte, Sheri-Michelle Koopowitz, Mayuresh S. Korgaonkar, John H. Krystal, Ruth A. Lanius, Christine L. Larson, Lauren A. M. Lebois, Gen Li, Israel Liberzon, Guang Ming Lu, Yifeng Luo, Vincent A. Magnotta, Antje Manthey, Adi Maron-Katz, Geoffery May, Katie A. McLaughlin, Sven C. Mueller, Laura Nawijn, Steven M. Nelson, Richard W. J. Neufeld, Jack B. Nitschke, Erin O'Leary, Bunmi O. Olatunji, Miranda Olff, Matthew Peverill, K. Luan Phan, Rongfeng Qi, Yann Quidé, Ivan Rektor, Kerry J. Ressler, Pavel Riha, Marisa Ross, Isabelle M. Rosso, Lauren E. Salminen, Kelly A. Sambrook, Christian Schmahl, Martha Elizabeth Shenton, Margaret A. Sheridan, Chiahao Shih, Maurizio Sicorello, Anika Sierk, Alan N. Simmons, Raluca M. Simons, Jeffrey S. Simons, Scott R. Sponheim, Murray B. Stein, Dan J. Stein, Jennifer S. Stevens, Thomas Straube, Delin Sun, Jean Théberge, Paul M. Thompson, Sophia I. Thomopoulos, Nic J. A. van der Wee, Steven J. A. van der Werff, Theo G. M. van Erp, Sanne J. H. van Rooij, Mirjam van Zuiden, Tim Varkevisser, Dick J. Veltman, Robert R. J. M. Vermeiren, Henrik Walter, Li Wang, Xin Wang, Carissa N. Weis, Sherry Winternitz, Hong Xie, Ye Zhu, Melanie Wall, Yuval Neria, Rajendra A. Morey:
Neuroimaging-based classification of PTSD using data-driven computational approaches: A multisite big data study from the ENIGMA-PGC PTSD consortium. NeuroImage 283: 120412 (2023) - [c22]Ryan J. Cali, Ravi R. Bhatt, Sophia I. Thomopoulos, Shruti Gadewar, Iyad Ba Gari, Tamoghna Chattopadhyay, Neda Jahanshad, Paul M. Thompson:
The Influence of Brain MRI Defacing Algorithms on Brain-Age Predictions via 3D Convolutional Neural Networks. EMBC 2023: 1-6 - [c21]Nikhil J. Dhinagar, Sophia I. Thomopoulos, Emily Laltoo, Paul M. Thompson:
Efficiently Training Vision Transformers on Structural MRI Scans for Alzheimer's Disease Detection. EMBC 2023: 1-6 - [c20]Yixue Feng, Bramsh Qamar Chandio, Sophia I. Thomopoulos, Tamoghna Chattopadhyay, Paul M. Thompson:
Variational Autoencoders for Generating Synthetic Tractography-Based Bundle Templates in a Low-Data Setting. EMBC 2023: 1-6 - [c19]Shruti Prashant Gadewar, Elnaz Nourollahimoghadam, Ravi R. Bhatt, Abhinaav Ramesh, Shayan Javid, Iyad Ba Gari, Alyssa H. Zhu, Sophia I. Thomopoulos, Paul M. Thompson, Neda Jahanshad:
A Comprehensive Corpus Callosum Segmentation Tool for Detecting Callosal Abnormalities and Genetic Associations from Multi Contrast MRIs. EMBC 2023: 1-4 - [c18]Nikita Goel, Sophia I. Thomopoulos, Tamoghna Chattopadhyay, Paul M. Thompson:
Predictive Modeling Of Alzheimer's Disease Prognosis Using Anatomical & Diffusion MRI. EMBC 2023: 1-5 - [c17]Yixue Feng, Bramsh Qamar Chandio, Julio E. Villalon-Reina, Sophia I. Thomopoulos, Himanshu Joshi, Gauthami Nair, Anand A. Joshi, Ganesan Venkatasubramanian, John P. John, Paul M. Thompson:
BundleCleaner: Unsupervised Denoising and Subsampling of Diffusion MRI-Derived Tractography Data. CDMRI@MICCAI 2023: 152-164 - [c16]Shruti Prashant Gadewar, Alyssa H. Zhu, Sunanda Somu, Abhinaav Ramesh, Iyad Ba Gari, Sophia I. Thomopoulos, Paul M. Thompson, Talia M. Nir, Neda Jahanshad:
Normative Aging for an Individual's Full Brain MRI Using Style GANs to Detect Localized Neurodegeneration. MLMI@MICCAI (2) 2023: 387-395 - [c15]Iyad Ba Gari, Abhinaav Ramesh, Shayan Javid, Shruti Prashant Gadewar, Elnaz Nourollahimoghadam, Sophia I. Thomopoulos, Paul M. Thompson, Talia M. Nir, Neda Jahanshad:
Medial Tractography Analysis (MeTA) for White Matter Population Analyses Across Datasets. NER 2023: 1-5 - [c14]Tamoghna Chattopadhyay, Dheeraj Komandur, Jayati Naik, Ketaki Buwa, Saket Ozarkar, Sophia I. Thomopoulos, Paul M. Thompson:
Can Structural MRIs be used to Detect Amyloid Positivity using Deep Learning? SIPAIM 2023: 1-4 - [c13]Iyad Ba Gari, Shayan Javid, Alyssa H. Zhu, Shruti Prashant Gadewar, Siddharth Narula, Abhinaav Ramesh, Sophia I. Thomopoulos, Lachlan T. Strike, Greig I. de Zubicaray, Katie L. McMahon, Margaret J. Wright, Paul M. Thompson, Talia M. Nir, Neda Jahanshad:
Along-Tract Parameterization of White Matter Microstructure using Medial Tractography Analysis (MeTA). SIPAIM 2023: 1-5 - [c12]Nikita Goel, Sophia I. Thomopoulos, Paul M. Thompson:
Predicting Decline in Clinical Assessments of Alzheimer's Disease With Machine Learning and 3D Brain MRI. SIPAIM 2023: 1-4 - [c11]Dheeraj Komandur, Umang Gupta, Tamoghna Chattopadhyay, Nikhil J. Dhinagar, Sophia I. Thomopoulos, Jiu-Chiuan Chen, Dan Beavers, Greg Ver Steeg, Paul M. Thompson:
Unsupervised harmonization of brain MRI using 3D CycleGANs and its effect on brain age prediction. SIPAIM 2023: 1-5 - [c10]Julio E. Villalon-Reina, Alyssa H. Zhu, Talia M. Nir, Sophia I. Thomopoulos, Emily Laltoo, Leila Kushan, Carrie E. Bearden, Neda Jahanshad, Paul M. Thompson:
Large-scale Normative Modeling of Brain Microstructure. SIPAIM 2023: 1-5 - [i3]Nikhil J. Dhinagar, Sophia I. Thomopoulos, Emily Laltoo, Paul M. Thompson:
Efficiently Training Vision Transformers on Structural MRI Scans for Alzheimer's Disease Detection. CoRR abs/2303.08216 (2023) - [i2]Nikhil J. Dhinagar, Amit Singh, Saket Ozarkar, Ketaki Buwa, Sophia I. Thomopoulos, Conor Owens-Walton, Emily Laltoo, Yao-Liang Chen, Philip A. Cook, Corey McMillan, Chih-Chien Tsai, Jiun-Jie Wang, Yih-Ru Wu, Paul M. Thompson:
Video and Synthetic MRI Pre-training of 3D Vision Architectures for Neuroimage Analysis. CoRR abs/2309.04651 (2023) - [i1]Vladimir Belov, Tracy Erwin-Grabner, Ling-Li Zeng, Christopher R. K. Ching, André Aleman, Alyssa R. Amod, Zeynep Basgoze, Francesco Benedetti, Bianca Besteher, Katharina Brosch, Robin Bülow, Romain Colle, Colm G. Connolly, Emmanuelle Corruble, Baptiste Couvy-Duchesne, Kathryn Cullen, Udo Dannlowski, Christopher G. Davey, Annemiek Dols, Jan Ernsting, Jennifer W. Evans, Lukas Fisch, Paola Fuentes-Claramonte, Ali Saffet Gonul, Ian H. Gotlib, Hans Jörgen Grabe, Nynke A. Groenewold, Dominik Grotegerd, Tim Hahn, J. Paul Hamilton, Laura K. M. Han, Ben J. Harrison, Tiffany C. Ho, Neda Jahanshad, Alec J. Jamieson, Andriana Karuk, Tilo Kircher, Bonnie Klimes-Dougan, Sheri-Michelle Koopowitz, Thomas M. Lancaster, Ramona Leenings, Meng Li, David E. J. Linden, Frank P. MacMaster, David M. A. Mehler, Susanne Meinert, Elisa Melloni, Bryon A. Mueller, Benson Mwangi, Igor Nenadic, Amar Ojha, Yasumasa Okamoto, Mardien L. Oudega, Brenda W. J. H. Penninx, Sara Poletti, Edith Pomarol-Clotet, Maria J. Portella, Elena Pozzi, Joaquim Radua, Elena Rodríguez-Cano, Matthew D. Sacchet, Raymond Salvador, Anouk Schrantee, Kang Sim, Jair C. Soares, Aleix Solanes, Dan J. Stein, Frederike Stein, Aleks Stolicyn, Sophia I. Thomopoulos, Yara J. Toenders, Aslihan Uyar-Demir, Eduard Vieta, Yolanda Vives-Gilabert, Henry Völzke, Martin Walter, Heather C. Whalley, Sarah Whittle, Nils R. Winter, Katharina Wittfeld, Margaret J. Wright, Mon-Ju Wu, Tony T. Yang, Carlos Zarate, Dick J. Veltman, Lianne Schmaal, Paul M. Thompson, Roberto Goya-Maldonado:
DenseNet and Support Vector Machine classifications of major depressive disorder using vertex-wise cortical features. CoRR abs/2311.11046 (2023) - 2022
- [j3]Delin Sun, Gopalkumar Rakesh, Courtney C. Haswell, Mark W. Logue, C. Lexi Baird, Erin O'Leary, Andrew S. Cotton, Hong Xie, Marijo B. Tamburrino, Tian Chen, Emily L. Dennis, Neda Jahanshad, Lauren E. Salminen, Sophia I. Thomopoulos, Faisal Rashid, Christopher R. K. Ching, Saskia B. J. Koch, Jessie L. Frijling, Laura Nawijn, Mirjam van Zuiden, Xi Zhu, Benjamin Suarez-Jimenez, Anika Sierk, Henrik Walter, Antje Manthey, Jennifer S. Stevens, Negar Fani, Sanne J. H. van Rooij, Murray B. Stein, Jessica Bomyea, Inga Koerte, Kyle Choi, Steven J. A. van der Werff, Robert R. J. M. Vermeiren, Julia Herzog, Lauren A. M. Lebois, Justin T. Baker, Elizabeth A. Olson, Thomas Straube, Mayuresh S. Korgaonkar, Elpiniki Andrew, Ye Zhu, Gen Li, Jonathan Ipser, Anna R. Hudson, Matthew Peverill, Kelly A. Sambrook, Evan Gordon, Lee Baugh, Gina L. Forster, Raluca M. Simons, Jeffrey S. Simons, Vincent Magnotta, Adi Maron-Katz, Stefan du Plessis, Seth G. Disner, Nicholas D. Davenport, Daniel W. Grupe, Jack B. Nitschke, Terri A. deRoon-Cassini, Jacklynn M. Fitzgerald, John H. Krystal, Ifat Levy, Miranda Olff, Dick J. Veltman, Li Wang, Yuval Neria, Michael D. De Bellis, Tanja Jovanovic, Judith K. Daniels, Martha Shenton, Nic J. A. van der Wee, Christian Schmahl, Milissa L. Kaufman, Isabelle M. Rosso, Scott R. Sponheim, David Bernd Hofmann, Richard A. Bryant, Kelene A. Fercho, Dan J. Stein, Sven C. Mueller, Bobak Hosseini, K. Luan Phan, Katie A. McLaughlin, Richard J. Davidson, Christine L. Larson, Geoffrey May, Steven M. Nelson, Chadi G. Abdallah, Hassaan Gomaa, Amit Etkin, Zelekha A. Seedat, Ilan Harpaz-Rotem, Israel Liberzon, Theo G. M. van Erp, Yann Quidé, Xin Wang, Paul M. Thompson, Rajendra A. Morey:
A comparison of methods to harmonize cortical thickness measurements across scanners and sites. NeuroImage 261: 119509 (2022) - [j2]Jessica A. Turner, Vince D. Calhoun, Paul M. Thompson, Neda Jahanshad, Christopher R. K. Ching, Sophia I. Thomopoulos, Eric Verner, Gregory P. Strauss, Anthony O. Ahmed, Matthew D. Turner, Sunitha Basodi, Judith M. Ford, Daniel H. Mathalon, Adrian Preda, Aysenil Belger, Bryon A. Mueller, Kelvin O. Lim, Theo G. M. van Erp:
ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability. Neuroinformatics 20(1): 261-275 (2022) - [c9]Bramsh Qamar Chandio, Tamoghna Chattopadhyay, Conor Owens-Walton, Julio E. Villalon-Reina, Leila Nabulsi, Sophia I. Thomopoulos, Eleftherios Garyfallidis, Paul M. Thompson:
FiberNeat: Unsupervised White Matter Tract Filtering. EMBC 2022: 5055-5061 - 2021
- [c8]Eleonora Ficiarà, Valentino Crespi, Shruti Prashant Gadewar, Sophia I. Thomopoulos, Joshua Boyd, Paul M. Thompson, Neda Jahanshad, Fabrizio Pizzagalli:
Predicting Progression from Mild Cognitive Impairment to Alzheimer's Disease using MRI-based Cortical Features and a Two-State Markov Model. ISBI 2021: 1145-1149 - [c7]Shruti Gadewar, Alyssa H. Zhu, Sophia I. Thomopoulos, Zhuocheng Li, Iyad Ba Gari, Piyush Maiti, Paul M. Thompson, Neda Jahanshad:
Region Specific Automatic Quality Assurance For MRI-Derived Cortical Segmentations. ISBI 2021: 1288-1291 - [c6]Mengting Liu, Piyush Maiti, Sophia I. Thomopoulos, Alyssa H. Zhu, Yaqiong Chai, Hosung Kim, Neda Jahanshad:
Style Transfer Using Generative Adversarial Networks for Multi-site MRI Harmonization. MICCAI (3) 2021: 313-322 - 2020
- [c5]Ling-Li Zeng, Christopher R. K. Ching, Zvart Abaryan, Sophia I. Thomopoulos, Kai Gao, Alyssa H. Zhu, Anjanibhargavi Ragothaman, Faisal Rashid, Marc Harrison, Lauren E. Salminen, Brandalyn C. Riedel, Neda Jahanshad, Dewen Hu, Paul M. Thompson:
A Deep Transfer Learning Framework for 3D Brain Imaging Based on Optimal Mass Transport. MLCN/RNO-AI@MICCAI 2020: 169-176
2010 – 2019
- 2019
- [j1]Artemis Zavaliangos-Petropulu, Talia M. Nir, Sophia I. Thomopoulos, Robert I. Reid, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack Jr., Michael W. Weiner, Neda Jahanshad, Paul M. Thompson:
Diffusion MRI Indices and Their Relation to Cognitive Impairment in Brain Aging: The Updated Multi-protocol Approach in ADNI3. Frontiers Neuroinformatics 13: 2 (2019) - [c4]Talia M. Nir, Sophia I. Thomopoulos, Julio E. Villalon-Reina, Artemis Zavaliangos-Petropulu, Emily L. Dennis, Robert I. Reid, Matt A. Bernstein, Bret J. Borowski, Clifford R. Jack, Michael W. Weiner, Neda Jahanshad, Paul M. Thompson:
Multi-Shell Diffusion MRI Measures of Brain Aging: A Preliminary Comparison From ADNI3. ISBI 2019: 173-177 - [c3]Qifan Yang, Sophia I. Thomopoulos, Linda Ding, Wesley Surento, Paul M. Thompson, Neda Jahanshad:
Support Vector Based Autoregressive Mixed Models of Longitudinal Brain Changes and Corresponding Genetics in Alzheimer's Disease. PRIME@MICCAI 2019: 160-167 - 2018
- [c2]Vikash Gupta, Sophia I. Thomopoulos, Conor K. Corbin, Faisal Rashid, Paul M. Thompson:
FIBERNET 2.0: An automatic neural network based tool for clustering white matter fibers in the brain. ISBI 2018: 708-711 - 2017
- [c1]Vikash Gupta, Sophia I. Thomopoulos, Faisal Rashid, Paul M. Thompson:
FiberNET: An Ensemble Deep Learning Framework for Clustering White Matter Fibers. MICCAI (1) 2017: 548-555
Coauthor Index
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