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Journal Articles
- 2023
[j3]Robert J. Millikin, Kalpana Raja, John W. Steill, Cannon Lock, Xuancheng Tu, Ian Ross, Lam C. Tsoi, Finn Kuusisto, Zijian Ni, Miron Livny, Brian Bockelman, James A. Thomson, Ron M. Stewart:
Serial KinderMiner (SKiM) discovers and annotates biomedical knowledge using co-occurrence and transformer models. BMC Bioinform. 24(1): 412 (2023)- 2021
- [j2]Jared Brown
, Chris Barry, Matthew T. Schmitz, Cara Argus, Jennifer M. Bolin, Michael P. Schwartz, Amy Van Aartsen, John W. Steill, Scott Swanson, Ron M. Stewart, James A. Thomson, Christina Kendziorski:
Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells. PLoS Comput. Biol. 17(3) (2021) - 2019
- [j1]Chris Barry, Matthew T. Schmitz, Cara Argus, Jennifer M. Bolin, Mitchell D. Probasco, Ning Leng, Bret Duffin, John W. Steill, Scott Swanson, Brian E. McIntosh, Ron M. Stewart, Christina Kendziorski, James A. Thomson, Rhonda Bacher:
Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. PLoS Comput. Biol. 15(12) (2019)
Conference and Workshop Papers
- 2017
- [c1]Finn Kuusisto, John W. Steill, Zhaobin Kuang, James A. Thomson, David Page, Ron M. Stewart:
A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications. CRI 2017
Parts in Books or Collections
- 2020
- [p1]Kalpana Raja, Jeyakumar Natarajan, Finn Kuusisto, John W. Steill, Ian Ross, James A. Thomson, Ron M. Stewart:
Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. Protein-Protein Interaction Networks 2020: 13-34
Informal and Other Publications
- 2020
- [i2]Finn Kuusisto, Daniel Ng, John W. Steill, Ian Ross, Miron Livny, James A. Thomson, David Page, Ron M. Stewart:
KinderMiner Web: a simple web tool for ranking pairwise associations in biomedical applications. F1000Research 9: 832 (2020) - 2019
- [i1]Finn Kuusisto, John W. Steill, Zhaobin Kuang, James A. Thomson, David Page, Ron M. Stewart:
A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications. CoRR abs/1906.05255 (2019)
Coauthor Index
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