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ORCIDRong Chen 0006
Person information
- affiliation: Stanford University School of Medicine, Stanford, USA
- affiliation: Lucile Packard Children's Hospital, Palo Alto, USA
Other persons with the same name
- Rong Chen — disambiguation page
- Rong Chen 0001
![[0000-0002-6115-8130]](https://dblp.dagstuhl.de/img/orcid-mark.12x12.png "0000-0002-6115-8130")
— Shanghai Jiao Tong University, Institute of Parallel and Distributed Systems, China (and 1 more) - Rong Chen 0002 — Fuzhou University, Center for Discrete Mathematics, China (and 1 more)
- Rong Chen 0003 — Dalian Maritime University, Department of Information Science and Technology, China
- Rong Chen 0004 — Southwest Jiaotong University, MOE Key Laboratory of High-Speed Railway Engineering, Chengdu, China
- Rong Chen 0005 — University of Maryland School of Medicine, Department of Diagnostic Radiology and Nuclear Medicine, Baltimore, MD, USA (and 1 more)
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2020 – today
- 2021
[c12]Meng Ma, Kyeryoung Lee, Yun Mai, Chris Gilman, Zongzhi Liu, Mingwei Zhang, Minghao Li, Arielle Redfern, Tommy Mullaney, Tony Prentice, Paul McDonagh, Qi Pan, William Oh, Rong Chen, Eric E. Schadt, Xiaoyan Wang:
The Real-World Trend Analysis of Cancer Drugs Empowered by Natural Language Processing. AMIA 2021- [c11]Minghao Li, Kyeryoung Lee, Zongzhi Liu, Meng Ma, Qi Pan, Rong Chen, Eric E. Schadt, Xiaoyan Wang:
Applying Bayesian hyperparameter optimization towards accurate and efficient topic modeling in clinical notes. ICHI 2021: 493-494 - 2020
- [c10]Mingwei Zhang, Zongzhi Liu, Meng Ma, Kyeryoung Lee, Yun Mai, Scott Jones, Chris Gilman, Ying Ru, Matthew Deitz, Yunrou Gong, Xiang Zhou, Krish Ghosh, Rong Chen, Eric E. Schadt, Xiaoyan Wang:
DxTree: a visual analytics tool for hierarchical representation of disease cohort counts for clinical trials. AMIA 2020
2010 – 2019
- 2018
- [j13]Khader Shameer, Benjamin S. Glicksberg, Rachel Hodos, Kipp W. Johnson, Marcus A. Badgeley, Ben Readhead, Max S. Tomlinson, Timothy O'Connor, Riccardo Miotto, Brian A. Kidd, Rong Chen, Avi Ma'ayan, Joel T. Dudley:
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. Briefings Bioinform. 19(4): 656-678 (2018) - [c9]Milo R. Smith, Benjamin S. Glicksberg, Li Li, Rong Chen, Hirofumi Morishita, Joel T. Dudley:
Loss-of-function of neuroplasticity-related genes confers risk for human neurodevelopmental disorders. PSB 2018: 68-79 - [c8]Benjamin S. Glicksberg, Riccardo Miotto, Kipp W. Johnson, Khader Shameer, Li Li, Rong Chen, Joel T. Dudley:
Automated disease cohort selection using word embeddings from Electronic Health Records. PSB 2018: 145-156 - 2017
- [c7]Meng Ma, Changchang Wang, Benjamin S. Glicksberg, Eric E. Schadt, Shuyu Dan Li, Rong Chen:
Identify Cancer Driver Genes Through Shared Mendelian Disease Pathogenic Variants and Cancer Somatic Mutations. PSB 2017: 473-484 - 2016
- [j12]Wei-Yi Cheng, Jörg Hakenberg, Shuyu Dan Li, Rong Chen:
DIVAS: a centralized genetic variant repository representing 150 000 individuals from multiple disease cohorts. Bioinform. 32(1): 151-153 (2016) - [j11]Benjamin S. Glicksberg, Li Li, Marcus A. Badgeley, Khader Shameer, Roman Kosoy, Noam D. Beckmann, Nam Pho, Jörg Hakenberg, Meng Ma, Kristin L. Ayers, Gabriel E. Hoffman, Shuyu Dan Li, Eric E. Schadt, Chirag J. Patel, Rong Chen, Joel T. Dudley:
Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinform. 32(12): 101-110 (2016) - [j10]Jörg Hakenberg, Wei-Yi Cheng, Philippe Thomas, Ying-Chih Wang, Andrew V. Uzilov, Rong Chen:
Integrating 400 million variants from 80, 000 human samples with extensive annotations: towards a knowledge base to analyze disease cohorts. BMC Bioinform. 17: 24 (2016) - 2015
- [c6]Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen:
An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships. Pacific Symposium on Biocomputing 2015: 407-418 - 2013
- [c5]Li Li, David Ruau, Rong Chen, Susan C. Weber, Atul J. Butte:
Systematic Identification of Risk Factors for Alzheimer's Disease Through Shared Genetic Architecture and Electronic Medical Records. Pacific Symposium on Biocomputing 2013: 224-235 - 2012
- [j9]Chirag J. Patel, Rong Chen, Atul J. Butte:
Data-driven integration of epidemiological and toxicological data to select candidate interacting genes and environmental factors in association with disease. Bioinform. 28(12): 121-126 (2012) - [j8]Alexander A. Morgan, Rong Chen, Atul J. Butte:
Clinical utility of sequence-based genotype compared with that derivable from genotyping arrays. J. Am. Medical Informatics Assoc. 19(e1) (2012) - [j7]David Ruau, Joel Dudley, Rong Chen, Nicholas G. Phillips, Gary E. Swan, Laura Lazzeroni, J. David Clark, Atul J. Butte, Martin S. Angst:
Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases. PLoS Comput. Biol. 8(6) (2012) - 2011
- [j6]Jesse M. Engreitz, Rong Chen, Alexander A. Morgan, Joel Dudley, Rohan Mallelwar, Atul J. Butte:
ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression. Bioinform. 27(23): 3317-3318 (2011) - [c4]Rong Chen, Atul J. Butte:
The Reference Human Genome Demonstrates High Risk of Type 1 Diabetes and Other Disorders. Pacific Symposium on Biocomputing 2011: 231-242 - [c3]Joel Dudley, Rong Chen, Atul J. Butte:
Matching Cancer Genomes to Established Cell Lines for Personalized Oncology. Pacific Symposium on Biocomputing 2011: 243-252 - 2010
- [j5]Jesse M. Engreitz, Alexander A. Morgan, Joel Dudley, Rong Chen, Rahul Thathoo, Russ B. Altman, Atul J. Butte:
Content-based microarray search using differential expression profiles. BMC Bioinform. 11: 603 (2010) - [j4]Silpa Suthram, Joel Dudley, Annie P. Chiang, Rong Chen, Trevor Hastie, Atul J. Butte:
Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets. PLoS Comput. Biol. 6(2) (2010) - [j3]Rong Chen, Tara K. Sigdel, Li Li, Neeraja Kambham, Joel Dudley, Szu-chuan Hsieh, R. Bryan Klassen, Amery Chen, Tuyen Caohuu, Alexander A. Morgan, Hannah A. Valantine, Kiran K. Khush, Minnie M. Sarwal, Atul J. Butte:
Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross-Organ Transplant Rejection and Other Conditions. PLoS Comput. Biol. 6(9) (2010)
2000 – 2009
- 2009
- [j2]Nigam H. Shah, Clément Jonquet, Annie P. Chiang, Atul J. Butte, Rong Chen, Mark A. Musen:
Ontology-driven indexing of public datasets for translational bioinformatics. BMC Bioinform. 10(S-2) (2009) - 2008
- [j1]Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte:
GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed. BMC Bioinform. 9 (2008) - 2007
- [c2]Yi-An Lin, Annie P. Chiang, Ray Lin, Peggy Yao, Rong Chen, Atul J. Butte:
Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository. AMIA 2007 - 2006
- [c1]Atul J. Butte, Rong Chen:
Finding Disease-Related Genomic Experiments Within an International Repository: First Steps in Translational Bioinformatics. AMIA 2006
Coauthor Index
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