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ORCIDAiping Lu
Ai-ping Lu – Ai-Ping Lu
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- affiliation: Hong Kong Baptist University, School of Chinese Medicine, Hong Kong
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2020 – today
- 2024
[j40]Jiacai Yi
, Ziyi Yang, Wen-Tao Zhao, Zhi-Jiang Yang, Xiao-Chen Zhang, Chengkun Wu, Ai-Ping Lu, Dong-Sheng Cao:
ChemMORT: an automatic ADMET optimization platform using deep learning and multi-objective particle swarm optimization. Briefings Bioinform. 25(2) (2024)- 2023
- [j39]Lei Wang, Shao-Hua Shi, Hui Li, Xiangxiang Zeng, Su-You Liu, Zhao-Qian Liu, Yafeng Deng, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Reducing false positive rate of docking-based virtual screening by active learning. Briefings Bioinform. 24(1) (2023) - [j38]Su-Qing Yang, Liu-Xia Zhang, You-Jin Ge, Jin-Wei Zhang, Jian-Xin Hu, Cheng-Ying Shen, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
In-silico target prediction by ensemble chemogenomic model based on multi-scale information of chemical structures and protein sequences. J. Cheminformatics 15(1): 48 (2023) - [j37]Teng-Zhi Long, Shao-Hua Shi, Shao Liu, Ai-Ping Lu, Zhao-Qian Liu, Min Li, Tingjun Hou, Dong-Sheng Cao:
Structural Analysis and Prediction of Hematotoxicity Using Deep Learning Approaches. J. Chem. Inf. Model. 63(1): 111-125 (2023) - [j36]Yanqing Duan, Li Fu, Xiao-Chen Zhang, Teng-Zhi Long, Yuan-Hang He, Zhao-Qian Liu, Ai-Ping Lu, Yafeng Deng, Chang-Yu Hsieh, Tingjun Hou, Dong-Sheng Cao:
Improved GNNs for Log D7.4 Prediction by Transferring Knowledge from Low-Fidelity Data. J. Chem. Inf. Model. 63(8): 2345-2359 (2023) - 2022
- [j35]Ning-Ning Wang, Xiang-Gui Wang, Guo-Li Xiong, Ziyi Yang, Ai-Ping Lu, Xiang Chen, Shao Liu, Tingjun Hou, Dong-Sheng Cao:
Machine learning to predict metabolic drug interactions related to cytochrome P450 isozymes. J. Cheminformatics 14(1): 23 (2022) - [j34]Liu-Xia Zhang, Jie Dong, Hui Wei, Shao-Hua Shi, Ai-Ping Lu, Gui-Ming Deng, Dong-Sheng Cao:
TCMSID: a simplified integrated database for drug discovery from traditional chinese medicine. J. Cheminformatics 14(1): 89 (2022) - [j33]Guo-Li Xiong, Zhi-Jiang Yang, Jiacai Yi, Ningning Wang, Lei Wang, Huimin Zhu, Chengkun Wu, Ai-Ping Lu, Xiang Chen, Shao Liu, Tingjun Hou, Dongsheng Cao:
DDInter: an online drug-drug interaction database towards improving clinical decision-making and patient safety. Nucleic Acids Res. 50(D1): 1200-1207 (2022) - 2021
- [j32]Jie Dong, Min-Feng Zhu, Yong-Huan Yun, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
BioMedR: an R/CRAN package for integrated data analysis pipeline in biomedical study. Briefings Bioinform. 22(1): 474-484 (2021) - [j31]Guo-Li Xiong, Wenling Ye, Chao Shen, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Improving structure-based virtual screening performance via learning from scoring function components. Briefings Bioinform. 22(3) (2021) - [j30]Ziyi Yang, Zhi-Jiang Yang, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Scopy: an integrated negative design python library for desirable HTS/VS database design. Briefings Bioinform. 22(3) (2021) - [j29]Ziyi Yang, Jie Dong, Zhi-Jiang Yang, Mingzhu Yin, Hong-Li Jiang, Ai-Ping Lu, Xiang Chen, Tingjun Hou, Dong-Sheng Cao:
ChemFLuo: a web-server for structure analysis and identification of fluorescent compounds. Briefings Bioinform. 22(4) (2021) - [j28]Li Fu, Ziyi Yang, Zhi-Jiang Yang, Mingzhu Yin, Ai-Ping Lu, Xiang Chen, Shao Liu, Tingjun Hou, Dong-Sheng Cao:
QSAR-assisted-MMPA to expand chemical transformation space for lead optimization. Briefings Bioinform. 22(5) (2021) - [j27]Ziyi Yang, Zhi-Jiang Yang, Yue Zhao, Mingzhu Yin, Ai-Ping Lu, Xiang Chen, Shao Liu, Tingjun Hou, Dong-Sheng Cao:
PySmash: Python package and individual executable program for representative substructure generation and application. Briefings Bioinform. 22(5) (2021) - [j26]Chengkun Wu, Xiao-Chen Zhang, Zhi-Jiang Yang, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Learning to SMILES: BAN-based strategies to improve latent representation learning from molecules. Briefings Bioinform. 22(6) (2021) - [j25]Yue Zhao, Xiang-Gui Wang, Zhong-Ye Ma, Guo-Li Xiong, Zhi-Jiang Yang, Yan Cheng, Ai-Ping Lu, Zhi-Jun Huang, Dong-Sheng Cao:
Systematic comparison of ligand-based and structure-based virtual screening methods on poly (ADP-ribose) polymerase-1 inhibitors. Briefings Bioinform. 22(6) (2021) - [j24]Ziyi Yang, Li Fu, Ai-Ping Lu, Shao Liu, Tingjun Hou, Dong-Sheng Cao:
Semi-automated workflow for molecular pair analysis and QSAR-assisted transformation space expansion. J. Cheminformatics 13(1): 86 (2021) - [j23]Guo-Li Xiong, Zhenxing Wu, Jiacai Yi, Li Fu, Zhi-Jiang Yang, Chang-Yu Hsieh, Mingzhu Yin, Xiangxiang Zeng, Chengkun Wu, Aiping Lu, Xiang Chen, Tingjun Hou, Dong-Sheng Cao:
ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties. Nucleic Acids Res. 49(Webserver-Issue): 5-14 (2021) - 2020
- [j22]Li Fu, Lu Liu, Zhi-Jiang Yang, Pan Li, Jun-Jie Ding, Yong-Huan Yun, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Systematic Modeling of log D7.4 Based on Ensemble Machine Learning, Group Contribution, and Matched Molecular Pair Analysis. J. Chem. Inf. Model. 60(1): 63-76 (2020) - [j21]Ziyi Yang, Jie Dong, Zhi-Jiang Yang, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Structural Analysis and Identification of False Positive Hits in Luciferase-Based Assays. J. Chem. Inf. Model. 60(4): 2031-2043 (2020) - [j20]Wenling Ye, Chao Shen, Guo-Li Xiong, Jun-Jie Ding, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Improving Docking-Based Virtual Screening Ability by Integrating Multiple Energy Auxiliary Terms from Molecular Docking Scoring. J. Chem. Inf. Model. 60(9): 4216-4230 (2020) - [j19]Panchi Li, Tong Shi, Aiping Lu, Bing Wang:
Quantum implementation of classical Marr-Hildreth edge detection. Quantum Inf. Process. 19(2): 64 (2020)
2010 – 2019
- 2019
- [j18]Wei Zhou, Xiaojuan He, Ziyi Chen, Danping Fan, Yonghua Wang, Hui Feng, Ge Zhang, Aiping Lu, Lianbo Xiao:
LncRNA HOTAIR-mediated Wnt/β-catenin network modeling to predict and validate therapeutic targets for cartilage damage. BMC Bioinform. 20(1): 412:1-412:13 (2019) - [j17]Ziyi Yang, Zhi-Jiang Yang, Jie Dong, Liang-Liang Wang, Liu-Xia Zhang, Jun-Jie Ding, Xiao-Qin Ding, Ai-Ping Lu, Tingjun Hou, Dong-Sheng Cao:
Structural Analysis and Identification of Colloidal Aggregators in Drug Discovery. J. Chem. Inf. Model. 59(9): 3714-3726 (2019) - [j16]Panchi Li, Tong Shi, Aiping Lu, Bing Wang:
Quantum circuit design for several morphological image processing methods. Quantum Inf. Process. 18(12): 364 (2019) - 2018
- [j15]Jie Dong, Zhi-Jiang Yao, Lin Zhang, Feijun Luo, Qinlu Lin, Ai-Ping Lu, Alex F. Chen, Dong-Sheng Cao:
PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions. J. Cheminformatics 10(1): 16:1-16:11 (2018) - [j14]Jie Dong, Ning-Ning Wang, Zhi-Jiang Yao, Lin Zhang, Yan Cheng, Defang Ouyang, Ai-Ping Lu, Dong-Sheng Cao:
ADMETlab: a platform for systematic ADMET evaluation based on a comprehensively collected ADMET database. J. Cheminformatics 10(1): 29:1-29:11 (2018) - [j13]Ning-Ning Wang, Jie Dong, Lin Zhang, Defang Ouyang, Yan Cheng, Alex F. Chen, Ai-Ping Lu, Dong-Sheng Cao:
HAMdb: a database of human autophagy modulators with specific pathway and disease information. J. Cheminformatics 10(1): 34:1-34:8 (2018) - 2017
- [j12]Tao Huang, Hong Mi, Cheng-Yuan Lin, Ling Zhao, Linda L. D. Zhong, Fengbin Liu, Ge Zhang, Ai-ping Lu, Zhaoxiang Bian, Shuhai Lin, Man Zhang, Yanhong Li, Dongdong Hu, Chung-Wah Cheng:
MOST: most-similar ligand based approach to target prediction. BMC Bioinform. 18(1): 165:1-165:11 (2017) - [j11]Jie Dong, Zhi-Jiang Yao, Min-Feng Zhu, Ning-Ning Wang, Ben Lu, Alex F. Chen, Ai-Ping Lu, Hongyu Miao, Wen-Bin Zeng, Dong-Sheng Cao:
ChemSAR: an online pipelining platform for molecular SAR modeling. J. Cheminformatics 9(1): 27:1-27:13 (2017) - 2016
- [j10]Zhi-Jiang Yao, Jie Dong, Yu-Jing Che, Min-Feng Zhu, Ming Wen, Ning-Ning Wang, Shan Wang, Ai-Ping Lu, Dong-Sheng Cao:
TargetNet: a web service for predicting potential drug-target interaction profiling via multi-target SAR models. J. Comput. Aided Mol. Des. 30(5): 413-424 (2016) - [j9]Jie Dong, Zhi-Jiang Yao, Ming Wen, Min-Feng Zhu, Ning-Ning Wang, Hongyu Miao, Ai-Ping Lu, Wen-Bin Zeng, Dong-Sheng Cao:
BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions. J. Cheminformatics 8(1): 34:1-34:13 (2016) - [j8]Ning-Ning Wang, Jie Dong, Yin-Hua Deng, Min-Feng Zhu, Ming Wen, Zhiqiang Yao, Ai-Ping Lu, Jian-Bing Wang, Dong-Sheng Cao:
ADME Properties Evaluation in Drug Discovery: Prediction of Caco-2 Cell Permeability Using a Combination of NSGA-II and Boosting. J. Chem. Inf. Model. 56(4): 763-773 (2016) - 2015
- [j7]Peng Li, Chao Huang, Yingxue Fu, Jinan Wang, Ziyin Wu, Jinlong Ru, Chunli Zheng, Zihu Guo, Xuetong Chen, Wei Zhou, Wenjuan Zhang, Yan Li, Jianxin Chen, Aiping Lu, Yonghua Wang:
Large-scale exploration and analysis of drug combinations. Bioinform. 31(12): 2007-2016 (2015) - [j6]Jie Dong, Dong-Sheng Cao, Hongyu Miao, Shao Liu, Bai-Chuan Deng, Yong-Huan Yun, Ning-Ning Wang, Ai-Ping Lu, Wen-Bin Zeng, Alex F. Chen:
ChemDes: an integrated web-based platform for molecular descriptor and fingerprint computation. J. Cheminformatics 7: 60:1-60:10 (2015) - 2014
- [j5]Chao Huang, Chunli Zheng, Yan Li, Yonghua Wang, Aiping Lu, Ling Yang:
Systems pharmacology in drug discovery and therapeutic insight for herbal medicines. Briefings Bioinform. 15(5): 710-733 (2014) - [j4]Peng Li, Yingxue Fu, Jinlong Ru, Chao Huang, Jiangfeng Du, Chunli Zheng, Xuetong Chen, Pidong Li, Aiping Lu, Ling Yang, Yonghua Wang:
Insights from systems pharmacology into cardiovascular drug discovery and therapy. BMC Syst. Biol. 8: 141 (2014) - [j3]Guang Zheng, Kai Cui, Junping Zhan, Zekun Ning, Miao Jiang, Cheng Lu, Aiping Lu:
Bisimulation-based Consistency Checking on Syndrome Feng-Shi-Re-Bi in Rheumatoid Arthritis. J. Softw. 9(3): 536-540 (2014) - [c29]Yanqin Bian, Hongmei Zhou, Jinrui Guo, Yahong Wang, Guang Zheng, Hongtao Guo, Yong Tan, Xiaoxia Ren, Rongfen Dong, Jinrong Zhang, Zhaoli Cui, Aiping Lu, Miao Jiang, Yaoxian Wang:
Study of acupuncture therapy on hypertension based on text ming. BIBM 2014: 1-4 - [c28]Yanqin Bian, Kai Cui, Lingru Wang, Guang Zheng, Hongtao Guo, Jing Yang, Miao Jiang, Aiping Lu:
Application of acupuncture on coronary heart disease treatment: A text mining study. BIBM 2014: 6-10 - [c27]Hao Gu, Jian Li, Qi Zhang, Qiang Li, Miao Jiang, Ai-ping Lu, Chengke Cai, Yun Wang:
Based on bioinformatics approach to explore the novel targets and activity of multiple ingredients in Shuang-Huang-Lian (Using bioinformatics approach to explore the machanisms of a modern formula). BIBM 2014: 33-34 - [c26]Dan He, Meiling Yao, Miao Jiang, Chi Zhang, Aiping Lu:
The detection of Chinese herbal rules for Gastro-esophageal reflux disease by data mining. BIBM 2014: 35-36 - [c25]Guang Zheng, Huanhuan Shi, Xiaolie Yi, Lingru Wang, Mengmeng Song, Xiaojuan He, Aiping Lu:
Exploring the potential therapeutic mechanism of Da-Fang-Feng-Tang for rheumatoid arthritis. BIBM 2014: 40-45 - [c24]Dongmei Jia, Guang Zheng, Jing Yang, Hongtao Guo, Zekun Ning, Mengmeng Song, Xiaojuan He, Cheng Lu, Yong Tan, Ning Zhao, Jingan Bai, Shanshan Shen, Yaoxian Wang, Aiping Lu, Miao Jiang:
Rules of acupoint selection in acupoint application therapy on coronary heart disease: A text mining study. BIBM 2014: 41-44 - [c23]Shanshan Shen, Yaoxian Wang, Guang Zheng, Dongmei Jia, Aiping Lu, Miao Jiang:
Exploring rules of traditional Chinese medicine external therapy and food therapy in treatment of mammary gland hyperplasia with text mining. BIBM 2014: 158-159 - [c22]Shanshan Shen, Yaoxian Wang, Guang Zheng, Xiaojuan He, Yong Tan, Ke Zhou, Dongmei Jia, Aiping Lu, Miao Jiang:
Applying bioinformatic technique to discovery molecular mechansim of Banxia and Tianma combination treating tinnitus. BIBM 2014: 160-161 - [c21]Guang Zheng, Rong Li, Huanhuan Shi, Qi Xiao, Wenpeng Xu, Ying Wang, Cheng Lu, Aiping Lu:
Exploring the potential therapeutic mechanism of Xiao-Yao-San for major depression. BIBM 2014: 229-234 - [c20]Guang Zheng, Ting Hao, Rong Li, Lingru Wang, Kai Cui, Cheng Lu, Aiping Lu:
Fang-Feng-Tang's potential therapeutic agents for rheumatoid arthritis. BIBM 2014: 235-238 - [c19]Guang Zheng, Tong Wei, Changsheng Ma, Jianjun Liu, Jinyu Liu, Cheng Lu, Aiping Lu:
Exploring potential therapeutic agents of Duhuo-Jisheng-Tang for rheumatoid arthritis. BIBM 2014: 476-479 - [c18]Honghao Wei, Yang Yang, Huan Chen, Bin Xu, Jian Li, Miao Jiang, Aiping Lu:
Predicting Health Care Risk with Big Data Drawn from Clinical Physiological Parameters. SMP 2014: 88-98 - 2013
- [c17]Yong Tan, Cheng Lu, Miao Jiang, Li Li, Xiaojuan He, Xuejie Han, Aiping Lu, Jian Li:
Understanding synergetic activities of Fuzi-Dahuang herb pairs based on network pharmacology. BIBM 2013: 16-21 - [c16]Hongmei Zhou, Jinrui Guo, Xiaoxia Ren, Rongfen Dong, Jinrong Zhang, Zhaoli Cui, Na Ge, Yong Tan, Aiping Lu, Miao Jiang, Yahong Wang, Yaoxian Wang, Guang Zheng, Hongtao Guo:
Rules of traditional physical therapies in treating hypertension through text mining. BIBM 2013: 48-51 - [c15]Minghai Zhang, Dongmei Jia, Xiaoxia Ren, Guang Zheng, Hongtao Guo, Jing Yang, Xiaojuan He, Aiping Lu, Miao Jiang, Yaoxian Wang:
A text-mining analysis on the application of traditional Chinese medicine external therapy and food therapy in hypertension treatment. BIBM 2013: 77-78 - [c14]Guang Zheng, Mengmeng Song, Biao He, Xiaoqing Li, Jia Luo, Aiping Lu:
Exploring the molecular mechanism of Juan-Bi-Tang for Feng-Han-Shi-Bi syndrome in rheumatoid arthritis. BIBM 2013: 77-79 - [c13]Chunyan Jiang, Jian Li, Yong Tan, Cheng Lu, Feng Cai, Junping Zhan, Xiaojuan He, Miao Jiang, Aiping Lu:
Using bioinformatic technique to discovery Huangqin and Lianqiao combination as a potential new drus for treatment acne. BIBM 2013: 83-89 - [c12]Dan Luo, Cheng Xiao, Guang Zheng, Shuyu Sun, Minzhi Wang, Xiaojuan He, Aiping Lu:
Searching association rules of traditional Chinese medicine on Ligusticum wallichii by text mining. BIBM 2013: 162-167 - [c11]Hui-qin Zhang, Jian Li, Guang Zheng, Miao Jiang, Li Li, Yong Tan, Ai-ping Lu:
Using text mining to understand traditional Chinese medicine pathogenesis of nonalcoholic fatty liver disease. BIBM 2013: 311-314 - [c10]Hongmei Zhou, Jing Yang, Jinrui Guo, Yahong Wang, Guang Zheng, Hongtao Guo, Yong Tan, Xiaoxia Ren, Rongfen Dong, Jinrong Zhang, Zhaoli Cui, Aiping Lu, Miao Jiang, Yaoxian Wang:
Rule-based text mining of traditional Chinese medicine patterns with Chinese herbal medicines and formulae on hypertension. BIBM 2013: 332-335 - [c9]Junping Zhan, Guang Zheng, Mengmeng Song, Tong Wei, Miao Jiang, Cheng Lu, Aiping Lu:
Exploring Li-Fa-Fang-Yao rules of major depressive disorder in traditional Chinese medicine through text mining. BIBM 2013: 460-464 - [c8]Guang Zheng, Zekun Ning, Junping Zhan, Kai Cui, Miao Jiang, Cheng Lu, Aiping Lu:
Bisimulation-based consistency checking on Feng-Han-Shi-Bi syndrome for rheumatoid arthritis. FSKD 2013: 713-717 - 2012
- [c7]Junping Zhan, Guang Zheng, Miao Jiang, Cheng Lu, Hongtao Guo, Aiping Lu:
Rule-Based Text Mining of Chinese Herbal Medicines with Patterns in Traditional Chinese Medicine for Chronic Obstructive Pulmonary Disease. WISM 2012: 510-520 - 2011
- [j2]Guang Zheng, Miao Jiang, Xiaojuan He, Jing Zhao, Hongtao Guo, Gao Chen, Qinglin Zha, Aiping Lu:
Discrete derivative: a data slicing algorithm for exploration of sharing biological networks between rheumatoid arthritis and coronary heart disease. BioData Min. 4: 18 (2011) - [j1]Guang Zheng, Jinzhao Wu, Aiping Lu:
Stochastic Process Algebra with Value-Passing and Weak Time Restrictions. J. Softw. 6(5): 769-782 (2011) - [c6]Guang Zheng, Miao Jiang, Cheng Lu, Hongtao Guo, Junping Zhan, Aiping Lu:
Exploring the biological basis of deficiency pattern in rheumatoid arthritis through text mining. BIBM Workshops 2011: 811-816 - [c5]Zhongxian Li, Guang Zheng, Hongtao Guo, Jinsheng Yang, Aiping Lu:
Applying discrete derivative algorithm in two dimensions in mining acupuncture and moxibustion rules on Bell's palsy. FSKD 2011: 1570-1574 - 2010
- [c4]Guang Zheng, Xiaojuan He, Miao Jiang, Aiping Lu:
Goal based bisimulation for testing therapies in traditional Chinese medicine. BIBM Workshops 2010: 603-608 - [c3]Xiaorong Ding, Aiping Lu, Qinglin Zha:
Getting started in text mining to find the biological network shared with rheumatoid arthritis, coronary heart disease and diabetes mellitus. BIBM Workshops 2010: 609-612 - [c2]Aiping Lu, Jianping Li, Lin Yang:
A New Method of Data Preprocessing for Network Security Situational Awareness. DBTA 2010: 1-4
2000 – 2009
- 2009
- [c1]Qinglin Zha, Yiting He, Xiaorong Ding, Miao Jiang, Xuewen Liu, Cheng Lu, Ian Tsang, Aiping Lu:
The Predictive Role of Symptoms/signs on ACR20 Responses in Rheumatoid Arthritis Analyzed with Data Mining Approaches. BMEI 2009: 1-8
Coauthor Index
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