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Niema Moshiri
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2020 – today
- 2024
- [j9]Daniel Ji, Robert Aboukhalil, Niema Moshiri
:
ViralWasm: a client-side user-friendly web application suite for viral genomics. Bioinform. 40(1) (2024) - [c8]Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing:
SpecHD: Hyperdimensional Computing Framework for FPGA-Based Mass Spectrometry Clustering. DATE 2024: 1-6 - 2023
- [j8]Niema Moshiri
:
ViralConsensus: a fast and memory-efficient tool for calling viral consensus genome sequences directly from read alignment data. Bioinform. 39(5) (2023) - [j7]Weihong Xu
, Saransh Gupta, Niema Moshiri
, Tajana Simunic Rosing:
RAPIDx: High-Performance ReRAM Processing In-Memory Accelerator for Sequence Alignment. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 42(10): 3275-3288 (2023) - [c7]Tianqi Zhang, Antonio González, Niema Moshiri
, Rob Knight, Tajana Rosing:
GenoMiX: Accelerated Simultaneous Analysis of Human Genomics, Microbiome Metagenomics, and Viral Sequences. BioCAS 2023: 1-5 - [i5]Derek Jones, Jonathan E. Allen, Xiaohua Zhang, Behnam Khaleghi, Jaeyoung Kang, Weihong Xu, Niema Moshiri, Tajana Simunic Rosing:
HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations. CoRR abs/2303.15604 (2023) - [i4]Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing:
SpecHD: Hyperdimensional Computing Framework for FPGA-based Mass Spectrometry Clustering. CoRR abs/2311.12874 (2023) - 2022
- [c6]Behnam Khaleghi, Tianqi Zhang, Niya Shao, Ameen Akel, Ken Curewitz, Justin Eno, Sean Eilert, Niema Moshiri
, Tajana Rosing:
FAST: FPGA-based Acceleration of Genomic Sequence Trimming. BioCAS 2022: 510-514 - [c5]Behnam Khaleghi, Tianqi Zhang, Cameron Martino, George Armstrong, Ameen Akel, Ken Curewitz, Justin Eno, Sean Eilert, Rob Knight, Niema Moshiri
, Tajana Rosing:
SALIENT: Ultra-Fast FPGA-based Short Read Alignment. FPT 2022: 1-10 - [i3]Weihong Xu, Saransh Gupta, Niema Moshiri, Tajana Rosing:
RAPIDx: High-performance ReRAM Processing in-Memory Accelerator for Sequence Alignment. CoRR abs/2211.05733 (2022) - 2021
- [j6]Niema Moshiri
:
ViralMSA: massively scalable reference-guided multiple sequence alignment of viral genomes. Bioinform. 37(5): 714-716 (2021) - [j5]Kimberly Almaraz, Tyler Jang, McKenna Lewis, Titan Ngo, Miranda Song, Niema Moshiri
:
SEPIA: simulation-based evaluation of prioritization algorithms. BMC Medical Informatics Decis. Mak. 21(1): 177 (2021) - [j4]Elizabeth Leininger
, Kelly Shaw, Niema Moshiri
, Kelly Neiles
, Getiria Onsongo
, Anna M. Ritz
:
Ten simple rules for attending your first conference. PLoS Comput. Biol. 17(7) (2021) - [c4]Minxuan Zhou, Lingxi Wu, Muzhou Li, Niema Moshiri
, Kevin Skadron
, Tajana Rosing:
Ultra Efficient Acceleration for De Novo Genome Assembly via Near-Memory Computing. PACT 2021: 199-212 - [c3]McKenna Lewis, Niema Moshiri, Kit Curtius:
MethylDrift: A Software Package for Calculating Age-related Epigenetic Drift in Human Tissues Using DNA Methylation Data. AMIA 2021 - [c2]Sahand Salamat, Jaeyoung Kang
, Yeseong Kim, Mohsen Imani, Niema Moshiri
, Tajana Rosing:
FPGA Acceleration of Protein Back-Translation and Alignment. DATE 2021: 822-827 - [i2]Elizabeth Leininger
, Kelly Shaw, Niema Moshiri, Kelly Neiles, Getiria Onsongo, Anna M. Ritz:
Ten Simple Rules for Attending Your First Conference. CoRR abs/2101.11706 (2021) - 2020
- [j3]Niema Moshiri
:
TreeSwift: A massively scalable Python tree package. SoftwareX 11: 100436 (2020) - [c1]Yeseong Kim, Mohsen Imani, Niema Moshiri
, Tajana Rosing:
GenieHD: Efficient DNA Pattern Matching Accelerator Using Hyperdimensional Computing. DATE 2020: 115-120
2010 – 2019
- 2019
- [b1]Niema Moshiri:
Mathematical Modeling of Viral Evolution and Epidemiology. University of California, San Diego, USA, 2019 - [j2]Niema Moshiri
, Manon Ragonnet-Cronin
, Joel O. Wertheim, Siavash Mirarab
:
FAVITES: simultaneous simulation of transmission networks, phylogenetic trees and sequences. Bioinform. 35(11): 1852-1861 (2019) - [j1]Adam Rule
, Amanda Birmingham
, Cristal Zuñiga
, Ilkay Altintas
, Shih-Cheng Huang
, Rob Knight
, Niema Moshiri
, Mai H. Nguyen, Sara Brin Rosenthal
, Fernando Pérez
, Peter W. Rose
:
Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. PLoS Comput. Biol. 15(7) (2019) - 2018
- [i1]Adam Rule, Amanda Birmingham, Cristal Zuñiga, Ilkay Altintas, Shih-Cheng Huang, Rob Knight, Niema Moshiri, Mai H. Nguyen, Sara Brin Rosenthal, Fernando Pérez, Peter W. Rose:
Ten Simple Rules for Reproducible Research in Jupyter Notebooks. CoRR abs/1810.08055 (2018)
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last updated on 2024-08-05 20:16 CEST by the dblp team
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