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ORCIDYu-Dong Cai 0001
Person information
- affiliation: Shanghai University, School of Life Sciences, China
Other persons with the same name
- Yudong Cai 0002 — Zilliz, Shanghai, China
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Journal Articles
- 2024
[j35]Jingxin Ren, Xianchao Zhou, Ke Huang, Lei Chen, Wei Guo, Kaiyan Feng, Tao Huang
, Yu-Dong Cai:
Identification of key genes associated with persistent immune changes and secondary immune activation responses induced by influenza vaccination after COVID-19 recovery by machine learning methods. Comput. Biol. Medicine 169: 107883 (2024)- [j34]Lin Li, Feiming Huang, Yu-Hang Zhang, Yu-Dong Cai:
Identifying allergic-rhinitis-associated genes with random-walk-based method in PPI network. Comput. Biol. Medicine 175: 108495 (2024) - [j33]Jingxin Ren, Qian Gao, Xianchao Zhou, Lei Chen, Wei Guo, Kaiyan Feng, Tao Huang, Yu-Dong Cai:
Identification of key gene expression associated with quality of life after recovery from COVID-19. Medical Biol. Eng. Comput. 62(4): 1031-1048 (2024) - 2022
- [j32]Xiaoyong Pan, Lei Chen, Min Liu, Zhibin Niu, Tao Huang, Yu-Dong Cai:
Identifying Protein Subcellular Locations With Embeddings-Based node2loc. IEEE ACM Trans. Comput. Biol. Bioinform. 19(2): 666-675 (2022) - 2020
- [j31]Yu-Hang Zhang, Tao Zeng, Xiaoyong Pan, Wei Guo, Zijun Gan, Yunhua Zhang, Tao Huang, Yu-Dong Cai:
Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study. IEEE Access 8: 489-501 (2020) - [j30]Wei Guo, Tao Zeng, Tao Huang, Yu-Dong Cai:
Disease Cluster Detection and Functional Characterization. IEEE Access 8: 141958-141966 (2020) - 2019
- [j29]Lei Chen, Xiaoyong Pan, Tao Zeng, Yu-Hang Zhang, Tao Huang, Yu-Dong Cai:
Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells. IEEE Access 7: 128570-128578 (2019) - 2017
- [j28]Lei Chen, Shaopeng Wang, Yu-Hang Zhang, Jiarui Li, Zhi-Hao Xing, Jialiang Yang, Tao Huang, Yu-Dong Cai:
Identify Key Sequence Features to Improve CRISPR sgRNA Efficacy. IEEE Access 5: 26582-26590 (2017) - [j27]Lei Chen, Yu-Hang Zhang, Guohui Lu, Tao Huang, Yu-Dong Cai:
Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways. Artif. Intell. Medicine 76: 27-36 (2017) - [j26]Chenglin Liu, Yu-Hang Zhang, Tao Huang, Yudong Cai:
Identification of transcription factors that may reprogram lung adenocarcinoma. Artif. Intell. Medicine 83: 52-57 (2017) - 2016
- [j25]You Zhou, Tao Huang, Guohua Huang, Ning Zhang, Xiangyin Kong, Yu-Dong Cai:
Prediction of protein N-formylation and comparison with N-acetylation based on a feature selection method. Neurocomputing 217: 53-62 (2016) - 2015
- [j24]Fei Yuan, You Zhou, Meng Wang, Jing Yang, Kai Wu, Changhong Lu, Xiangyin Kong, Yu-Dong Cai:
Identifying New Candidate Genes and Chemicals Related to Prostate Cancer Using a Hybrid Network and Shortest Path Approach. Comput. Math. Methods Medicine 2015: 462363:1-462363:12 (2015) - [j23]Baoman Wang, Fei Yuan, Xiangyin Kong, Lan-Dian Hu, Yu-Dong Cai:
Identifying Novel Candidate Genes Related to Apoptosis from a Protein-Protein Interaction Network. Comput. Math. Methods Medicine 2015: 715639:1-715639:11 (2015) - 2014
- [j22]Yudong Cai, Tao Huang, Lei Chen, Shan Gao, Ning Zhang:
Novel Computational Methods and Tools in Biomedicine and Biopharmacy. Comput. Math. Methods Medicine 2014: 127515:1-127515:2 (2014) - 2011
- [j21]Tao Huang, Lei Chen, Xiao-Jun Liu, Yu-Dong Cai:
Predicting triplet of transcription factor - mediating enzyme - target gene by functional profiles. Neurocomputing 74(17): 3677-3681 (2011) - 2010
- [j20]Lei Chen, Kai-Yan Feng, Yu-Dong Cai, Kuo-Chen Chou, Hai-Peng Li:
Predicting the network of substrate-enzyme-product triads by combining compound similarity and functional domain composition. BMC Bioinform. 11: 293 (2010) - [j19]Lei Chen, Ziliang Qian, Kaiyan Feng, Yudong Cai:
Prediction of interactiveness between small molecules and enzymes by combining gene ontology and compound similarity. J. Comput. Chem. 31(8): 1766-1776 (2010) - 2009
- [j18]Bing Niu, Lin Lu, Liang Liu, Tian Hong Gu, Kai-Yan Feng, Wen-Cong Lu, Yu-Dong Cai:
HIV-1 protease cleavage site prediction based on amino acid property. J. Comput. Chem. 30(1): 33-39 (2009) - [j17]Lei Chen, Lin Lu, Kairui Feng, Wenjin Li, Jie Song, Lulu Zheng, Youlang Yuan, Zhenbing Zeng, Kai-Yan Feng, Wen-Cong Lu, Yudong Cai:
Multiple classifier integration for the prediction of protein structural classes. J. Comput. Chem. 30(14): 2248-2254 (2009) - 2007
- [j16]Ziliang Qian, Lingyi Lu, Xiao-Jun Liu, Yu-Dong Cai, Yixue Li:
An approach to predict transcription factor DNA binding site specificity based upon gene and transcription factor functional categorization. Bioinform. 23(18): 2449-2454 (2007) - [j15]Lingyi Lu, Ziliang Qian, Yu-Dong Cai, Yixue Li:
ECS: An automatic enzyme classifier based on functional domain composition. Comput. Biol. Chem. 31(3): 226-232 (2007) - 2006
- [j14]Peilin Jia, Tieliu Shi, Yudong Cai, Yixue Li:
Demonstration of two novel methods for predicting functional siRNA efficiency. BMC Bioinform. 7: 271 (2006) - [j13]Sujun Li, Boshu Liu, Rong Zeng, Yudong Cai, Yixue Li:
Predicting O-glycosylation sites in mammalian proteins by using SVMs. Comput. Biol. Chem. 30(3): 203-208 (2006) - [j12]Guoqing Zhang, Zhi-Wei Cao, Qing-ming Luo, Yu-Dong Cai, Yixue Li:
Operon prediction based on SVM. Comput. Biol. Chem. 30(3): 233-240 (2006) - 2005
- [j11]Kuo-Chen Chou, Yu-Dong Cai:
Predicting protein localization in budding Yeast. Bioinform. 21(7): 944-950 (2005) - [j10]Kuo-Chen Chou, Yu-Dong Cai:
Prediction of Membrane Protein Types by Incorporating Amphipathic Effects. J. Chem. Inf. Model. 45(2): 407-413 (2005) - 2004
- [j9]Yu-Dong Cai, Kuo-Chen Chou:
Predicting subcellular localization of proteins in a hybridization space. Bioinform. 20(7): 1151-1156 (2004) - [j8]Yu-Dong Cai, Andrew J. Doig:
Prediction of Saccharomyces cerevisiae protein functional class from functional domain composition. Bioinform. 20(8): 1292-1300 (2004) - 2003
- [j7]Yu-Dong Cai, Xiao-Jun Liu, Kuo-Chen Chou:
Prediction of protein secondary structure content by artificial neural network. J. Comput. Chem. 24(6): 727-731 (2003) - 2002
- [j6]Yu-Dong Cai, Xiao-Jun Liu, Kuo-Chen Chou:
Artificial Neural Network Model for Predicting Protein Subcellular Location. Comput. Chem. 26(2): 179-182 (2002) - [j5]Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou:
Prediction of Protein Structural Classes by Support Vector Machines. Comput. Chem. 26(3): 293-296 (2002) - [j4]Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou:
Artificial Neural Network Method for Predicting Protein Secondary Structure Content. Comput. Chem. 26(4): 347-350 (2002) - [j3]Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Kuo-Chen Chou:
Support vector machines for predicting HIV protease cleavage sites in protein. J. Comput. Chem. 23(2): 267-274 (2002) - 2001
- [j2]Yu-Dong Cai, Xiao-Jun Liu, Xue-biao Xu, Guo-Ping Zhou:
Support Vector Machines for predicting protein structural class. BMC Bioinform. 2: 3 (2001) - 1995
- [j1]Yudong Cai, Changqing Chen:
Artificial neural network method for discriminating coding regions of eukaryotic genes. Comput. Appl. Biosci. 11(5): 497-501 (1995)
Conference and Workshop Papers
- 2009
- [c2]Yudong Cai, ZhiSong He, Kaiyan Feng:
A committee of NNA classifiers for the prediction of the binding between miRNAs and the target genes using a novel coding method. SMC 2009: 4287-4292 - 2008
- [c1]Yu-Dong Cai, Guo-Ping Zhou:
Predicting Protein-Protein Interactions with Pseudo Amino Acid Composition. BMEI (1) 2008: 158-163
Coauthor Index
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